Wall clock time and date at job start Wed Apr 1 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.88843 * 2 1 4 4 C 1.54903 * 111.00450 * 236.11206 * 2 1 3 5 5 N 1.47425 * 104.83554 * 204.87986 * 4 2 1 6 6 C 1.34768 * 125.65164 * 204.09681 * 5 4 2 7 7 O 1.21352 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.49451 * 120.00497 * 179.97438 * 6 5 4 9 9 O 1.21354 * 119.99545 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00634 * 179.97438 * 8 6 5 11 11 C 1.46493 * 120.00022 * 179.97438 * 10 8 6 12 12 H 1.08994 * 109.47460 * 35.00372 * 11 10 8 13 13 C 1.53006 * 109.46969 * 155.00473 * 11 10 8 14 14 C 1.50700 * 109.46719 * 294.99717 * 13 11 10 15 15 H 1.07997 * 120.00349 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99911 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99866 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47323 * 120.00073 * 18 16 14 21 21 H 1.48500 * 109.47023 * 240.00031 * 18 16 14 22 22 C 1.50700 * 109.47439 * 274.99982 * 11 10 8 23 23 C 1.38235 * 120.00255 * 139.99887 * 22 11 10 24 24 C 1.38234 * 120.00220 * 179.97438 * 23 22 11 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38238 * 119.99742 * 359.52139 * 25 24 23 27 27 C 1.38234 * 120.00095 * 0.43554 * 26 25 24 28 28 C 1.47024 * 108.70032 * 24.35486 * 5 4 2 29 29 C 1.54338 * 107.26597 * 358.58972 * 28 5 4 30 30 H 1.09003 * 111.00035 * 219.59809 * 29 28 5 31 31 N 1.46897 * 110.51718 * 96.45016 * 29 28 5 32 32 H 1.08996 * 109.47436 * 182.43500 * 1 2 3 33 33 H 1.09010 * 109.47063 * 302.43303 * 1 2 3 34 34 H 1.08997 * 109.47420 * 62.42955 * 1 2 3 35 35 H 1.08999 * 110.36622 * 86.04263 * 4 2 1 36 36 H 1.08998 * 110.36792 * 323.71999 * 4 2 1 37 37 H 0.96998 * 119.99482 * 0.02562 * 10 8 6 38 38 H 1.08995 * 109.47252 * 54.99817 * 13 11 10 39 39 H 1.08998 * 109.47009 * 174.99875 * 13 11 10 40 40 H 0.97000 * 120.00056 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99770 * 0.02562 * 23 22 11 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.08003 * 120.00354 * 180.21032 * 26 25 24 45 45 H 1.08001 * 120.00324 * 179.78922 * 27 26 25 46 46 H 1.08999 * 109.87989 * 118.12938 * 28 5 4 47 47 H 1.08994 * 109.88515 * 239.29858 * 28 5 4 48 48 H 1.00903 * 110.99764 * 66.50178 * 31 29 28 49 49 H 1.00900 * 111.00139 * 190.45458 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7740 6 6 4.4479 -1.5600 -1.5950 7 8 4.3003 -1.4991 -2.7979 8 6 5.7611 -1.9876 -1.0240 9 8 5.9088 -2.0481 0.1790 10 7 6.7814 -2.3061 -1.8450 11 6 8.0688 -2.7247 -1.2852 12 1 7.8995 -3.2990 -0.3744 13 6 8.8105 -3.5918 -2.3045 14 6 8.0413 -4.8675 -2.5328 15 1 7.1159 -5.0421 -2.0041 16 6 8.5185 -5.8113 -3.4174 17 7 9.6451 -5.5985 -4.0616 18 14 7.5647 -7.3923 -3.7009 19 1 6.3401 -7.3890 -2.8610 20 1 7.1833 -7.4903 -5.1327 21 1 8.4129 -8.5546 -3.3339 22 6 8.8970 -1.5071 -0.9646 23 6 9.6518 -1.4698 0.1929 24 6 10.4119 -0.3531 0.4867 25 6 10.4125 0.7286 -0.3740 26 6 9.6608 0.6896 -1.5335 27 6 8.9014 -0.4273 -1.8277 28 6 3.4666 -1.2784 0.6953 29 6 2.0869 -0.8077 1.2021 30 1 2.1900 -0.1704 2.0804 31 7 1.2259 -1.9608 1.4971 32 1 -0.3634 -1.0267 0.0437 33 1 -0.3634 0.5512 0.8674 34 1 -0.3634 0.4756 -0.9109 35 1 2.1554 -0.1716 -2.0838 36 1 1.4522 -1.6703 -1.4024 37 1 6.6634 -2.2574 -2.8065 38 1 8.9015 -3.0491 -3.2454 39 1 9.8040 -3.8296 -1.9247 40 1 9.9810 -6.2626 -4.6837 41 1 9.6484 -2.3133 0.8672 42 1 11.0019 -0.3242 1.3908 43 1 11.0029 1.6027 -0.1424 44 1 9.6638 1.5334 -2.2077 45 1 8.3114 -0.4564 -2.7319 46 1 3.6615 -2.2954 1.0358 47 1 4.2430 -0.6072 1.0622 48 1 1.5844 -2.4891 2.2784 49 1 0.2748 -1.6685 1.6642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419479306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:42 Heat of formation + Delta-G solvation = -62.466349 kcal Electronic energy + Delta-G solvation = -30676.615203 eV Core-core repulsion = 26602.371158 eV Total energy + Delta-G solvation = -4074.244046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.94831 -40.66093 -39.66617 -38.95307 -36.99107 -35.02435 -34.62553 -32.68506 -32.61113 -31.71568 -30.60134 -29.19016 -28.20933 -26.93569 -25.12050 -23.85558 -23.48611 -23.10630 -21.38698 -20.94823 -20.78587 -19.00737 -18.60303 -18.09239 -17.73352 -17.43334 -17.00202 -16.84003 -16.52320 -16.44919 -16.08186 -15.71608 -15.18960 -15.05801 -14.78631 -14.54750 -14.36643 -14.25988 -14.21222 -14.02675 -13.72366 -13.57487 -13.50716 -13.47674 -13.07936 -12.96686 -12.77159 -12.65219 -12.47545 -12.18957 -12.09715 -11.96291 -11.90208 -11.66026 -11.61368 -11.36917 -10.70746 -10.56843 -10.21717 -9.86178 -9.77609 -9.59604 -9.55807 -8.23560 -6.33635 0.33868 0.47200 0.54086 1.26965 1.36080 1.37998 1.49801 2.12846 2.37504 2.47757 2.93983 3.10278 3.27278 3.44902 3.48088 3.67151 3.92122 3.93764 4.00030 4.19191 4.30059 4.30937 4.36494 4.50280 4.53118 4.56794 4.59484 4.71270 4.72971 4.74516 4.75851 4.87856 5.03026 5.04972 5.08925 5.13188 5.18566 5.19394 5.37584 5.46981 5.50779 5.59363 5.62721 5.73885 5.78231 6.02478 6.11962 6.16993 6.24470 6.27463 6.61767 6.65403 6.78378 6.95637 7.35234 8.87393 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.003777 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.853547 B = 7412.091891 C = 9902.588662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.097 0.903 4 C 0.109 3.891 5 N -0.582 5.582 6 C 0.517 3.483 7 O -0.550 6.550 8 C 0.505 3.495 9 O -0.539 6.539 10 N -0.668 5.668 11 C 0.200 3.800 12 H 0.073 0.927 13 C 0.037 3.963 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.126 4.126 28 C 0.114 3.886 29 C 0.087 3.913 30 H 0.083 0.917 31 N -0.850 5.850 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.009 0.991 39 H 0.014 0.986 40 H 0.265 0.735 41 H 0.120 0.880 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.350 0.650 49 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 16.002 12.819 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.315 5.315 6 C 0.300 3.700 7 O -0.428 6.428 8 C 0.285 3.715 9 O -0.417 6.417 10 N -0.318 5.318 11 C 0.096 3.904 12 H 0.092 0.908 13 C 0.000 4.000 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.201 1.201 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.009 4.009 29 C -0.025 4.025 30 H 0.101 0.899 31 N -0.385 5.385 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.027 0.973 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.128 0.872 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.164 0.836 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.528 15.631 12.140 23.973 hybrid contribution -0.162 -0.979 -0.197 1.011 sum -13.690 14.652 11.943 23.340 Atomic orbital electron populations 1.21666 0.91493 1.03233 1.03269 1.22453 0.98103 0.98367 0.92047 0.88505 1.22567 0.80854 0.98929 0.98818 1.48242 1.11760 1.63113 1.08415 1.19857 0.85013 0.79107 0.86040 1.90734 1.83332 1.53744 1.15005 1.20114 0.85342 0.79119 0.86896 1.90666 1.83267 1.53224 1.14525 1.45771 1.11220 1.64001 1.10824 1.19955 0.80874 0.91913 0.97704 0.90846 1.19152 0.94821 0.93210 0.92864 1.21422 1.07849 1.03308 1.24488 0.93047 1.25761 0.95837 1.01635 0.95471 1.70065 1.21538 1.36531 1.28196 0.85546 0.78766 0.79618 0.78023 1.19594 1.20335 1.20068 1.20337 0.98423 0.95585 0.95733 1.21181 0.97515 0.99416 0.96274 1.21419 0.98751 0.92951 1.00666 1.21487 0.99316 0.99329 0.94155 1.21407 0.96765 0.97905 0.98205 1.21052 1.00193 0.94104 0.99044 1.22327 0.98327 1.02339 0.77885 1.22364 0.90668 0.91881 0.97629 0.89926 1.58660 1.06552 1.24213 1.49104 0.91184 0.90365 0.91640 0.90848 0.90768 0.75346 0.97315 0.96747 0.92622 0.86154 0.83356 0.82918 0.83910 0.87175 0.91625 0.90730 0.83562 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.51 71.98 0.61 -0.64 16 2 C -0.09 -1.26 3.56 -9.40 -0.03 -1.30 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.11 2.44 6.35 86.85 0.55 2.99 16 5 N -0.58 -16.80 3.33 -813.37 -2.70 -19.51 16 6 C 0.52 18.91 7.91 87.27 0.69 19.60 16 7 O -0.55 -22.39 16.73 -3.25 -0.05 -22.45 16 8 C 0.50 19.94 7.81 87.27 0.68 20.62 16 9 O -0.54 -21.82 13.79 -3.26 -0.04 -21.86 16 10 N -0.67 -27.76 4.02 -447.44 -1.80 -29.56 16 11 C 0.20 8.71 2.12 44.25 0.09 8.80 16 12 H 0.07 3.40 7.44 -2.39 -0.02 3.39 16 13 C 0.04 1.91 4.49 29.85 0.13 2.04 16 14 C -0.53 -30.02 8.84 25.60 0.23 -29.79 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.68 5.46 84.66 0.46 1.14 16 17 N -0.92 -55.18 13.29 21.45 0.28 -54.90 16 18 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 23 C -0.13 -4.28 9.67 22.27 0.22 -4.06 16 24 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 26 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 27 C -0.13 -4.40 9.32 22.27 0.21 -4.19 16 28 C 0.11 2.74 5.23 86.73 0.45 3.19 16 29 C 0.09 1.28 3.94 46.11 0.18 1.46 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 N -0.85 -11.13 8.76 -163.74 -1.43 -12.57 16 32 H 0.07 0.69 6.58 -2.39 -0.02 0.67 16 33 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 36 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 37 H 0.41 17.32 8.07 -92.71 -0.75 16.57 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.12 3.97 8.04 -2.91 -0.02 3.95 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 45 H 0.11 3.90 7.72 -2.91 -0.02 3.88 16 46 H 0.07 1.83 7.61 -2.39 -0.02 1.81 16 47 H 0.07 1.88 7.56 -2.39 -0.02 1.86 16 48 H 0.35 4.14 9.08 -89.69 -0.81 3.32 16 49 H 0.36 3.02 7.01 -89.69 -0.63 2.40 16 Total: -1.00 -71.72 403.29 0.12 -71.60 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -1.20 Total: 35.36 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.05 Total: 6.70 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -5.65 Total: -116.53 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.10 Total: -44.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.72 0.12 -71.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419479306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.133 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds