Wall clock time and date at job start Wed Apr 1 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.88209 * 2 1 4 4 C 1.54908 * 111.00801 * 236.11392 * 2 1 3 5 5 N 1.47419 * 104.83542 * 204.87804 * 4 2 1 6 6 C 1.34777 * 125.65030 * 204.16802 * 5 4 2 7 7 O 1.21345 * 119.99605 * 359.97438 * 6 5 4 8 8 C 1.49450 * 120.00085 * 179.97438 * 6 5 4 9 9 O 1.21350 * 119.99838 * 359.97438 * 8 6 5 10 10 N 1.34775 * 119.99975 * 179.97438 * 8 6 5 11 11 C 1.46504 * 119.99895 * 175.02286 * 10 8 6 12 12 H 1.09004 * 109.46594 * 38.69198 * 11 10 8 13 13 C 1.52995 * 109.47329 * 278.69402 * 11 10 8 14 14 C 1.50702 * 109.47220 * 174.20489 * 13 11 10 15 15 H 1.08000 * 119.99466 * 354.92026 * 14 13 11 16 16 C 1.37873 * 119.99989 * 174.91498 * 14 13 11 17 17 N 1.31516 * 120.00131 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46954 * 89.99890 * 18 16 14 20 20 H 1.48493 * 109.46916 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.46635 * 329.99933 * 18 16 14 22 22 C 1.50697 * 109.46843 * 158.69092 * 11 10 8 23 23 C 1.38237 * 120.00328 * 39.72707 * 22 11 10 24 24 C 1.38231 * 120.00235 * 179.81031 * 23 22 11 25 25 C 1.38241 * 119.99833 * 0.42093 * 24 23 22 26 26 C 1.38234 * 119.99708 * 359.80990 * 25 24 23 27 27 C 1.38229 * 120.00520 * 0.02562 * 26 25 24 28 28 C 1.47024 * 108.69915 * 24.12760 * 5 4 2 29 29 C 1.54320 * 107.40587 * 358.86474 * 28 5 4 30 30 H 1.09001 * 110.71894 * 219.52104 * 29 28 5 31 31 N 1.46899 * 110.71885 * 96.24719 * 29 28 5 32 32 H 1.09003 * 109.46945 * 182.43045 * 1 2 3 33 33 H 1.09000 * 109.47239 * 302.43238 * 1 2 3 34 34 H 1.09004 * 109.46986 * 62.43201 * 1 2 3 35 35 H 1.09000 * 110.36506 * 86.03643 * 4 2 1 36 36 H 1.09005 * 110.36155 * 323.71974 * 4 2 1 37 37 H 0.96998 * 119.99571 * 355.03153 * 10 8 6 38 38 H 1.09001 * 109.46731 * 294.20140 * 13 11 10 39 39 H 1.08995 * 109.47423 * 54.20085 * 13 11 10 40 40 H 0.96994 * 120.00624 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99672 * 359.97438 * 23 22 11 42 42 H 1.07996 * 119.99921 * 180.21432 * 24 23 22 43 43 H 1.07992 * 119.99733 * 179.79416 * 25 24 23 44 44 H 1.08008 * 119.99414 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00199 * 179.97438 * 27 26 25 46 46 H 1.09006 * 109.88309 * 118.36209 * 28 5 4 47 47 H 1.09008 * 109.88234 * 239.36618 * 28 5 4 48 48 H 1.00891 * 111.00227 * 61.45636 * 31 29 28 49 49 H 1.00905 * 110.99815 * 185.41219 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4484 -1.5586 -1.5950 7 8 4.3012 -1.4963 -2.7979 8 6 5.7616 -1.9863 -1.0239 9 8 5.9088 -2.0481 0.1790 10 7 6.7823 -2.3033 -1.8450 11 6 8.1004 -2.6168 -1.2876 12 1 7.9793 -3.1961 -0.3722 13 6 8.8439 -1.3170 -0.9740 14 6 10.1382 -1.6356 -0.2710 15 1 10.3660 -2.6546 0.0051 16 6 11.0315 -0.6264 0.0196 17 7 12.1608 -0.9043 0.6336 18 14 10.6371 1.1362 -0.4575 19 1 9.9088 1.7987 0.6542 20 1 11.8993 1.8697 -0.7290 21 1 9.7895 1.1409 -1.6769 22 6 8.8912 -3.4189 -2.2888 23 6 8.8258 -3.1039 -3.6332 24 6 9.5542 -3.8371 -4.5512 25 6 10.3414 -4.8909 -4.1256 26 6 10.4030 -5.2088 -2.7818 27 6 9.6773 -4.4735 -1.8635 28 6 3.4683 -1.2731 0.6953 29 6 2.0886 -0.8062 1.2054 30 1 2.1975 -0.1678 2.0822 31 7 1.2275 -1.9584 1.5032 32 1 -0.3633 -1.0268 0.0436 33 1 -0.3634 0.5511 0.8674 34 1 -0.3633 0.4756 -0.9110 35 1 2.1554 -0.1715 -2.0838 36 1 1.4522 -1.6703 -1.4024 37 1 6.6441 -2.3238 -2.8048 38 1 9.0557 -0.7865 -1.9024 39 1 8.2256 -0.6909 -0.3308 40 1 12.7891 -0.1943 0.8384 41 1 8.2076 -2.2833 -3.9661 42 1 9.5058 -3.5889 -5.6011 43 1 10.9079 -5.4658 -4.8431 44 1 11.0177 -6.0324 -2.4494 45 1 9.7252 -4.7222 -0.8136 46 1 3.6666 -2.2883 1.0393 47 1 4.2451 -0.6003 1.0590 48 1 1.6295 -2.5322 2.2292 49 1 0.2966 -1.6592 1.7525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419479307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:47 Heat of formation + Delta-G solvation = -34.677892 kcal Electronic energy + Delta-G solvation = -30534.408967 eV Core-core repulsion = 26461.369919 eV Total energy + Delta-G solvation = -4073.039048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74437 -39.46522 -38.56823 -37.75728 -35.43394 -33.94744 -32.77883 -32.06261 -31.21144 -30.42276 -29.13239 -28.31809 -27.33197 -25.52687 -23.76601 -22.42709 -22.06387 -21.84672 -20.07940 -19.87245 -19.57122 -18.04544 -17.05080 -16.74576 -16.64346 -16.22593 -16.03534 -15.52762 -15.27993 -14.78995 -14.53711 -14.23401 -14.09919 -13.96502 -13.81151 -13.42928 -13.28507 -12.97351 -12.93728 -12.83404 -12.76058 -12.61749 -12.36853 -12.27244 -11.70862 -11.57223 -11.41399 -11.37721 -11.27069 -10.91737 -10.86406 -10.66769 -10.56682 -10.17637 -9.82223 -9.41166 -9.20167 -9.02930 -8.86175 -8.69997 -8.55427 -8.43980 -8.14847 -6.05028 -4.02829 1.64621 1.79373 1.87143 2.44586 3.30662 3.37601 3.41092 3.43813 3.63810 4.04849 4.14427 4.26286 4.33157 4.44597 4.58611 4.67930 5.04212 5.11942 5.15786 5.18905 5.28678 5.31194 5.31872 5.39041 5.40924 5.52501 5.58215 5.64139 5.68785 5.79783 5.90083 5.94848 5.97343 6.07198 6.10103 6.27455 6.45473 6.47792 6.56561 6.77228 6.85336 6.92509 7.00933 7.05229 7.11661 7.20643 7.24822 7.45009 7.52485 7.72990 7.90407 8.29421 8.48445 8.97685 9.56580 11.07866 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003208 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.733176 B = 8725.523550 C =10221.790513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.118 3.882 5 N -0.588 5.588 6 C 0.522 3.478 7 O -0.527 6.527 8 C 0.506 3.494 9 O -0.512 6.512 10 N -0.693 5.693 11 C 0.191 3.809 12 H 0.096 0.904 13 C -0.015 4.015 14 C -0.511 4.511 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.873 3.127 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.055 4.055 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.088 4.088 28 C 0.116 3.884 29 C 0.075 3.925 30 H 0.060 0.940 31 N -0.840 5.840 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.405 0.595 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.263 0.737 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.346 0.654 49 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -2.437 -2.930 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.305 3.695 7 O -0.403 6.403 8 C 0.286 3.714 9 O -0.388 6.388 10 N -0.346 5.346 11 C 0.089 3.911 12 H 0.114 0.886 13 C -0.053 4.053 14 C -0.549 4.549 15 H 0.096 0.904 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.701 3.299 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.056 4.056 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.106 4.106 28 C -0.008 4.008 29 C -0.037 4.037 30 H 0.078 0.922 31 N -0.373 5.373 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.241 0.759 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.159 0.841 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.200 -2.591 -3.438 20.653 hybrid contribution 0.005 1.550 0.362 1.592 sum -20.194 -1.041 -3.077 20.454 Atomic orbital electron populations 1.21664 0.93477 1.02951 1.01980 1.22475 0.96686 0.98718 0.94161 0.89466 1.22312 0.82209 0.98614 0.97249 1.48098 1.11580 1.64825 1.07690 1.20088 0.84660 0.78669 0.86061 1.90732 1.82889 1.52616 1.14109 1.19805 0.84828 0.79660 0.87137 1.90758 1.82767 1.51203 1.14045 1.46146 1.10202 1.67456 1.10767 1.20200 0.78383 0.98078 0.94472 0.88591 1.19954 0.96352 0.91794 0.97213 1.20893 1.00296 0.96517 1.37219 0.90383 1.24901 0.94792 0.98628 0.94573 1.69887 1.09413 1.32949 1.41581 0.86884 0.77842 0.85620 0.79593 1.20298 1.21323 1.19103 1.19743 0.97593 0.94748 0.93491 1.20854 1.00459 0.99677 0.92923 1.20966 0.97706 0.96292 0.99020 1.21014 0.99807 0.98169 0.95845 1.21057 0.99347 1.00021 0.93262 1.20967 0.95762 0.94188 0.99718 1.22229 0.95980 1.03511 0.79037 1.22490 0.92622 0.91665 0.96951 0.92196 1.58723 1.05923 1.21432 1.51196 0.90927 0.92457 0.92170 0.90451 0.90348 0.75879 0.95880 0.96044 0.92722 0.86687 0.86607 0.86741 0.86400 0.85787 0.89785 0.89767 0.84052 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.53 37.16 0.32 -0.50 16 2 C -0.10 -0.80 3.55 -88.34 -0.31 -1.11 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.12 1.26 6.36 -2.53 -0.02 1.24 16 5 N -0.59 -7.89 3.33 -171.03 -0.57 -8.46 16 6 C 0.52 8.50 7.91 -11.59 -0.09 8.41 16 7 O -0.53 -9.29 16.74 5.50 0.09 -9.20 16 8 C 0.51 9.06 7.72 -11.59 -0.09 8.97 16 9 O -0.51 -10.02 13.82 5.50 0.08 -9.94 16 10 N -0.69 -12.31 5.04 -55.36 -0.28 -12.59 16 11 C 0.19 3.85 2.19 -69.08 -0.15 3.69 16 12 H 0.10 2.04 7.49 -51.93 -0.39 1.65 16 13 C -0.01 -0.36 3.77 -27.88 -0.11 -0.46 16 14 C -0.51 -14.19 9.08 -34.44 -0.31 -14.50 16 15 H 0.08 2.28 7.04 -52.49 -0.37 1.91 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 18 Si 0.87 22.01 27.57 -169.99 -4.69 17.32 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.52 6.40 56.52 0.36 -6.15 16 22 C -0.06 -1.04 4.50 -104.62 -0.47 -1.51 16 23 C -0.12 -2.04 9.02 -39.58 -0.36 -2.40 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.12 -1.90 10.05 -39.59 -0.40 -2.29 16 27 C -0.09 -1.60 8.83 -39.58 -0.35 -1.95 16 28 C 0.12 1.36 5.22 -3.07 -0.02 1.35 16 29 C 0.07 0.61 3.93 -65.75 -0.26 0.35 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 N -0.84 -5.78 8.62 -3.00 -0.03 -5.80 16 32 H 0.07 0.42 6.71 -51.93 -0.35 0.08 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.40 6.53 6.35 -40.82 -0.26 6.27 16 38 H 0.02 0.56 6.84 -51.93 -0.36 0.20 16 39 H 0.02 0.54 7.76 -51.93 -0.40 0.13 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 1.78 6.95 -52.49 -0.36 1.42 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 45 H 0.12 2.24 7.84 -52.49 -0.41 1.83 16 46 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 47 H 0.08 1.10 7.57 -51.92 -0.39 0.70 16 48 H 0.35 2.16 9.04 -39.30 -0.36 1.80 16 49 H 0.34 1.72 7.35 -39.29 -0.29 1.43 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -33.33 395.55 -9.46 -42.79 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.30 Total: 9.91 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.51 Total: -3.28 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.10 Total: -53.55 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.69 Total: 17.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.33 -9.46 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419479307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.114 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds