Wall clock time and date at job start Wed Apr 1 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.88209 * 2 1 4 4 C 1.54908 * 111.00801 * 236.11392 * 2 1 3 5 5 N 1.47419 * 104.83542 * 204.87804 * 4 2 1 6 6 C 1.34777 * 125.65030 * 204.16802 * 5 4 2 7 7 O 1.21345 * 119.99605 * 359.97438 * 6 5 4 8 8 C 1.49450 * 120.00085 * 179.97438 * 6 5 4 9 9 O 1.21350 * 119.99838 * 359.97438 * 8 6 5 10 10 N 1.34775 * 119.99975 * 179.97438 * 8 6 5 11 11 C 1.46504 * 119.99895 * 175.02286 * 10 8 6 12 12 H 1.09004 * 109.46594 * 38.69198 * 11 10 8 13 13 C 1.52995 * 109.47329 * 278.69402 * 11 10 8 14 14 C 1.50702 * 109.47220 * 174.20489 * 13 11 10 15 15 H 1.08000 * 119.99466 * 354.92026 * 14 13 11 16 16 C 1.37873 * 119.99989 * 174.91498 * 14 13 11 17 17 N 1.31516 * 120.00131 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46954 * 89.99890 * 18 16 14 20 20 H 1.48493 * 109.46916 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.46635 * 329.99933 * 18 16 14 22 22 C 1.50697 * 109.46843 * 158.69092 * 11 10 8 23 23 C 1.38237 * 120.00328 * 39.72707 * 22 11 10 24 24 C 1.38231 * 120.00235 * 179.81031 * 23 22 11 25 25 C 1.38241 * 119.99833 * 0.42093 * 24 23 22 26 26 C 1.38234 * 119.99708 * 359.80990 * 25 24 23 27 27 C 1.38229 * 120.00520 * 0.02562 * 26 25 24 28 28 C 1.47024 * 108.69915 * 24.12760 * 5 4 2 29 29 C 1.54320 * 107.40587 * 358.86474 * 28 5 4 30 30 H 1.09001 * 110.71894 * 219.52104 * 29 28 5 31 31 N 1.46899 * 110.71885 * 96.24719 * 29 28 5 32 32 H 1.09003 * 109.46945 * 182.43045 * 1 2 3 33 33 H 1.09000 * 109.47239 * 302.43238 * 1 2 3 34 34 H 1.09004 * 109.46986 * 62.43201 * 1 2 3 35 35 H 1.09000 * 110.36506 * 86.03643 * 4 2 1 36 36 H 1.09005 * 110.36155 * 323.71974 * 4 2 1 37 37 H 0.96998 * 119.99571 * 355.03153 * 10 8 6 38 38 H 1.09001 * 109.46731 * 294.20140 * 13 11 10 39 39 H 1.08995 * 109.47423 * 54.20085 * 13 11 10 40 40 H 0.96994 * 120.00624 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99672 * 359.97438 * 23 22 11 42 42 H 1.07996 * 119.99921 * 180.21432 * 24 23 22 43 43 H 1.07992 * 119.99733 * 179.79416 * 25 24 23 44 44 H 1.08008 * 119.99414 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00199 * 179.97438 * 27 26 25 46 46 H 1.09006 * 109.88309 * 118.36209 * 28 5 4 47 47 H 1.09008 * 109.88234 * 239.36618 * 28 5 4 48 48 H 1.00891 * 111.00227 * 61.45636 * 31 29 28 49 49 H 1.00905 * 110.99815 * 185.41219 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4484 -1.5586 -1.5950 7 8 4.3012 -1.4963 -2.7979 8 6 5.7616 -1.9863 -1.0239 9 8 5.9088 -2.0481 0.1790 10 7 6.7823 -2.3033 -1.8450 11 6 8.1004 -2.6168 -1.2876 12 1 7.9793 -3.1961 -0.3722 13 6 8.8439 -1.3170 -0.9740 14 6 10.1382 -1.6356 -0.2710 15 1 10.3660 -2.6546 0.0051 16 6 11.0315 -0.6264 0.0196 17 7 12.1608 -0.9043 0.6336 18 14 10.6371 1.1362 -0.4575 19 1 9.9088 1.7987 0.6542 20 1 11.8993 1.8697 -0.7290 21 1 9.7895 1.1409 -1.6769 22 6 8.8912 -3.4189 -2.2888 23 6 8.8258 -3.1039 -3.6332 24 6 9.5542 -3.8371 -4.5512 25 6 10.3414 -4.8909 -4.1256 26 6 10.4030 -5.2088 -2.7818 27 6 9.6773 -4.4735 -1.8635 28 6 3.4683 -1.2731 0.6953 29 6 2.0886 -0.8062 1.2054 30 1 2.1975 -0.1678 2.0822 31 7 1.2275 -1.9584 1.5032 32 1 -0.3633 -1.0268 0.0436 33 1 -0.3634 0.5511 0.8674 34 1 -0.3633 0.4756 -0.9110 35 1 2.1554 -0.1715 -2.0838 36 1 1.4522 -1.6703 -1.4024 37 1 6.6441 -2.3238 -2.8048 38 1 9.0557 -0.7865 -1.9024 39 1 8.2256 -0.6909 -0.3308 40 1 12.7891 -0.1943 0.8384 41 1 8.2076 -2.2833 -3.9661 42 1 9.5058 -3.5889 -5.6011 43 1 10.9079 -5.4658 -4.8431 44 1 11.0177 -6.0324 -2.4494 45 1 9.7252 -4.7222 -0.8136 46 1 3.6666 -2.2883 1.0393 47 1 4.2451 -0.6003 1.0590 48 1 1.6295 -2.5322 2.2292 49 1 0.2966 -1.6592 1.7525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419479307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:46 Heat of formation + Delta-G solvation = -58.354569 kcal Electronic energy + Delta-G solvation = -30535.435664 eV Core-core repulsion = 26461.369919 eV Total energy + Delta-G solvation = -4074.065745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01614 -40.70896 -39.75160 -39.00050 -36.94856 -35.05308 -34.68065 -32.81584 -32.71741 -31.70369 -30.85250 -29.20319 -28.30601 -27.02620 -24.98346 -23.76117 -23.59680 -23.05537 -21.28793 -21.03104 -20.81017 -19.28258 -18.95360 -18.05993 -17.70843 -17.45450 -16.88908 -16.77979 -16.55119 -16.31210 -16.08095 -15.65705 -15.42050 -15.20779 -14.80267 -14.70069 -14.58032 -14.38783 -14.24919 -14.17587 -13.95169 -13.58286 -13.52238 -13.26503 -13.13555 -13.05200 -12.77799 -12.67824 -12.46451 -12.11052 -11.98817 -11.93663 -11.91989 -11.65489 -11.62238 -11.44760 -10.78838 -10.69919 -10.31502 -9.89193 -9.73724 -9.61184 -9.52895 -8.29064 -6.30977 0.27442 0.48459 0.57999 1.20185 1.30056 1.31051 1.41371 2.05710 2.32381 2.39560 2.95388 3.06103 3.19367 3.43007 3.43779 3.66096 3.73122 3.93584 3.99332 4.20334 4.28825 4.31542 4.39085 4.48760 4.53013 4.56362 4.57462 4.68436 4.71473 4.73445 4.77188 4.88183 4.90106 5.02231 5.05701 5.09991 5.16103 5.20146 5.24379 5.28456 5.48141 5.57199 5.60239 5.66603 5.78733 5.95485 6.14376 6.19698 6.22725 6.26466 6.58568 6.61864 6.72986 6.89027 7.31294 8.86800 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003208 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.733176 B = 8725.523550 C =10221.790513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.582 5.582 6 C 0.521 3.479 7 O -0.544 6.544 8 C 0.502 3.498 9 O -0.534 6.534 10 N -0.686 5.686 11 C 0.205 3.795 12 H 0.074 0.926 13 C -0.006 4.006 14 C -0.510 4.510 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.943 5.943 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.253 1.253 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.115 4.115 28 C 0.110 3.890 29 C 0.086 3.914 30 H 0.077 0.923 31 N -0.844 5.844 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.414 0.586 38 H 0.025 0.975 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.350 0.650 49 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.553 -1.622 -4.681 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.109 0.891 4 C -0.009 4.009 5 N -0.314 5.314 6 C 0.304 3.696 7 O -0.423 6.423 8 C 0.282 3.718 9 O -0.411 6.411 10 N -0.339 5.339 11 C 0.102 3.898 12 H 0.092 0.908 13 C -0.044 4.044 14 C -0.548 4.548 15 H 0.068 0.932 16 C -0.181 4.181 17 N -0.584 5.584 18 Si 0.757 3.243 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.177 1.177 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.133 4.133 28 C -0.013 4.013 29 C -0.026 4.026 30 H 0.095 0.905 31 N -0.379 5.379 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.253 0.747 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.126 0.874 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.164 0.836 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.187 -1.777 -5.185 22.854 hybrid contribution 0.601 1.170 0.940 1.617 sum -21.586 -0.607 -4.245 22.008 Atomic orbital electron populations 1.21637 0.91340 1.03374 1.03061 1.22497 0.98250 0.98213 0.92245 0.89076 1.22573 0.80614 0.99121 0.98570 1.48249 1.11881 1.63001 1.08289 1.19686 0.84556 0.79332 0.86056 1.90715 1.83095 1.53967 1.14520 1.20260 0.85601 0.79000 0.86894 1.90744 1.83344 1.52011 1.15037 1.45988 1.09361 1.67307 1.11257 1.19721 0.79358 0.96066 0.94700 0.90833 1.19785 0.94752 0.93588 0.96275 1.21123 1.01685 0.95331 1.36709 0.93212 1.25723 0.94670 1.02976 0.94769 1.70017 1.10657 1.34384 1.43317 0.85926 0.78067 0.80485 0.79820 1.19798 1.20524 1.17710 1.19693 0.98605 0.95537 0.94183 1.21079 1.01105 1.00434 0.92286 1.21404 0.96388 0.95502 1.00399 1.21474 0.99113 0.97889 0.95770 1.21369 0.98939 1.00199 0.93762 1.21045 0.97210 0.95380 0.99688 1.22334 0.98229 1.02571 0.78139 1.22381 0.90574 0.92150 0.97535 0.90517 1.58660 1.06513 1.21010 1.51706 0.90870 0.90784 0.91663 0.90681 0.90017 0.74750 0.95709 0.97362 0.92545 0.85546 0.83150 0.83090 0.84301 0.87450 0.91079 0.91297 0.83616 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.53 71.98 0.61 -0.54 16 2 C -0.09 -1.26 3.55 -9.32 -0.03 -1.29 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.11 2.24 6.36 86.86 0.55 2.79 16 5 N -0.58 -15.50 3.33 -813.37 -2.71 -18.21 16 6 C 0.52 17.11 7.91 87.27 0.69 17.80 16 7 O -0.54 -19.09 16.74 -3.23 -0.05 -19.15 16 8 C 0.50 18.51 7.72 87.27 0.67 19.18 16 9 O -0.53 -21.86 13.82 -3.25 -0.04 -21.91 16 10 N -0.69 -24.98 5.04 -447.43 -2.25 -27.23 16 11 C 0.21 8.61 2.19 44.24 0.10 8.70 16 12 H 0.07 3.37 7.49 -2.39 -0.02 3.35 16 13 C -0.01 -0.28 3.77 29.85 0.11 -0.17 16 14 C -0.51 -29.40 9.08 25.60 0.23 -29.17 16 15 H 0.05 3.08 7.04 -2.91 -0.02 3.06 16 16 C 0.02 0.95 5.47 84.65 0.46 1.41 16 17 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 18 Si 0.93 45.63 27.57 68.60 1.89 47.52 16 19 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.25 -11.74 6.40 99.48 0.64 -11.11 16 22 C -0.08 -3.06 4.50 -19.86 -0.09 -3.15 16 23 C -0.13 -4.29 9.02 22.27 0.20 -4.09 16 24 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 25 C -0.12 -3.35 10.05 22.27 0.22 -3.12 16 26 C -0.12 -3.89 10.05 22.27 0.22 -3.67 16 27 C -0.11 -4.34 8.83 22.27 0.20 -4.14 16 28 C 0.11 2.60 5.22 86.73 0.45 3.05 16 29 C 0.09 1.26 3.93 46.19 0.18 1.44 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 N -0.84 -10.01 8.62 -163.41 -1.41 -11.42 16 32 H 0.07 0.64 6.71 -2.39 -0.02 0.62 16 33 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 36 H 0.08 1.61 8.04 -2.38 -0.02 1.59 16 37 H 0.41 13.42 6.35 -92.71 -0.59 12.83 16 38 H 0.02 1.20 6.84 -2.39 -0.02 1.19 16 39 H 0.01 0.42 7.76 -2.39 -0.02 0.40 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.13 3.75 6.95 -2.91 -0.02 3.73 16 42 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 45 H 0.11 4.26 7.84 -2.91 -0.02 4.23 16 46 H 0.07 1.86 7.58 -2.38 -0.02 1.85 16 47 H 0.07 1.84 7.57 -2.38 -0.02 1.82 16 48 H 0.35 3.87 9.04 -89.70 -0.81 3.06 16 49 H 0.36 2.63 7.35 -89.69 -0.66 1.97 16 Total: -1.00 -74.24 395.55 -0.39 -74.63 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -1.13 Total: 32.64 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.02 Total: 2.00 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.07 Total: -115.73 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.10 Total: -41.06 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.89 Total: 47.52 kcal Total: -74.24 -0.39 -74.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419479307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.274 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds