Wall clock time and date at job start Wed Apr 1 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.51788 * 2 1 4 4 C 1.52786 * 109.56679 * 240.07721 * 2 1 3 5 5 N 1.47072 * 108.76885 * 186.37204 * 4 2 1 6 6 C 1.34771 * 120.88375 * 231.12380 * 5 4 2 7 7 O 1.21353 * 119.99852 * 7.76951 * 6 5 4 8 8 C 1.49450 * 120.00192 * 187.77176 * 6 5 4 9 9 O 1.21354 * 120.00036 * 6.71237 * 8 6 5 10 10 N 1.34777 * 120.00250 * 186.71613 * 8 6 5 11 11 C 1.46503 * 120.00282 * 179.97438 * 10 8 6 12 12 H 1.08993 * 109.47105 * 325.00221 * 11 10 8 13 13 C 1.53000 * 109.46882 * 205.00220 * 11 10 8 14 14 C 1.50698 * 109.47479 * 65.00278 * 13 11 10 15 15 H 1.08004 * 119.99414 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00260 * 179.97438 * 14 13 11 17 17 N 1.31521 * 120.00026 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00205 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47000 * 59.99885 * 18 16 14 20 20 H 1.48503 * 109.47228 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47142 * 300.00285 * 18 16 14 22 22 C 1.50700 * 109.46752 * 85.00481 * 11 10 8 23 23 C 1.38224 * 120.00360 * 39.72380 * 22 11 10 24 24 C 1.38237 * 120.00170 * 179.74382 * 23 22 11 25 25 C 1.38234 * 119.99606 * 0.53083 * 24 23 22 26 26 C 1.38235 * 120.00259 * 359.74729 * 25 24 23 27 27 C 1.38235 * 119.99434 * 220.00296 * 22 11 10 28 28 C 1.47083 * 118.23829 * 50.85249 * 5 4 2 29 29 C 1.53248 * 108.51927 * 309.09059 * 28 5 4 30 30 N 1.46898 * 109.33956 * 53.82733 * 29 28 5 31 31 H 1.09000 * 109.46921 * 299.94007 * 1 2 3 32 32 H 1.09008 * 109.46640 * 59.93024 * 1 2 3 33 33 H 1.08992 * 109.47167 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.55599 * 66.55404 * 4 2 1 35 35 H 1.08998 * 109.45831 * 306.12985 * 4 2 1 36 36 H 0.97002 * 119.99657 * 359.72556 * 10 8 6 37 37 H 1.09006 * 109.46396 * 185.00147 * 13 11 10 38 38 H 1.08996 * 109.47430 * 304.99722 * 13 11 10 39 39 H 0.96997 * 119.99830 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.00409 * 0.02562 * 23 22 11 41 41 H 1.07997 * 120.00477 * 180.29842 * 24 23 22 42 42 H 1.08001 * 119.99886 * 179.76234 * 25 24 23 43 43 H 1.07995 * 120.00068 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00159 * 359.97438 * 27 22 11 45 45 H 1.08998 * 109.62782 * 68.79641 * 28 5 4 46 46 H 1.08995 * 109.63012 * 189.37970 * 28 5 4 47 47 H 1.08998 * 109.49277 * 173.78765 * 29 28 5 48 48 H 1.09001 * 109.48898 * 293.87046 * 29 28 5 49 49 H 1.00904 * 111.00049 * 61.04244 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7181 -1.2477 5 7 3.5042 -0.8433 -1.1554 6 6 4.2977 -0.4493 -2.1709 7 8 3.8227 0.1436 -3.1172 8 6 5.7626 -0.7426 -2.1318 9 8 6.2186 -1.4392 -1.2489 10 7 6.5774 -0.2333 -3.0769 11 6 8.0135 -0.5203 -3.0382 12 1 8.3452 -0.5753 -2.0015 13 6 8.7757 0.5933 -3.7592 14 6 8.6074 1.8871 -3.0050 15 1 8.0161 1.9124 -2.1015 16 6 9.2088 3.0382 -3.4677 17 7 9.9292 3.0072 -4.5677 18 14 8.9995 4.6420 -2.5332 19 1 9.5343 4.4862 -1.1567 20 1 9.7394 5.7229 -3.2329 21 1 7.5579 4.9921 -2.4674 22 6 8.2813 -1.8363 -3.7219 23 6 7.5955 -2.1682 -4.8752 24 6 7.8450 -3.3731 -5.5053 25 6 8.7723 -4.2509 -4.9758 26 6 9.4540 -3.9215 -3.8192 27 6 9.2086 -2.7141 -3.1923 28 6 4.0782 -1.4043 0.0772 29 6 3.4866 -0.6537 1.2751 30 7 2.0202 -0.6938 1.1985 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5150 -0.8895 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7788 -0.1412 -2.1344 35 1 1.5924 -1.7095 -1.3061 36 1 6.2124 0.3204 -3.7848 37 1 9.8339 0.3364 -3.8082 38 1 8.3825 0.7078 -4.7693 39 1 10.3520 3.8171 -4.8934 40 1 6.8680 -1.4842 -5.2868 41 1 7.3127 -3.6303 -6.4091 42 1 8.9645 -5.1939 -5.4659 43 1 10.1782 -4.6075 -3.4053 44 1 9.7414 -2.4566 -2.2889 45 1 3.8283 -2.4628 0.1487 46 1 5.1611 -1.2807 0.0661 47 1 3.8156 -1.1277 2.1999 48 1 3.8235 0.3828 1.2573 49 1 1.6823 -1.6441 1.2297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419481675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:59 Heat of formation + Delta-G solvation = -31.266117 kcal Electronic energy + Delta-G solvation = -30858.231287 eV Core-core repulsion = 26785.340185 eV Total energy + Delta-G solvation = -4072.891102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.87347 -39.43028 -38.48299 -37.75409 -35.59563 -34.00584 -32.77056 -32.50828 -31.21996 -30.52299 -28.91972 -27.69376 -27.05986 -25.19515 -23.40459 -22.85587 -22.36078 -22.00040 -21.15840 -19.96671 -19.79206 -17.63586 -16.96618 -16.74773 -16.20913 -16.02194 -15.53675 -15.48483 -15.26457 -15.08086 -14.86521 -14.56814 -14.46637 -14.09532 -13.78023 -13.48068 -13.29161 -13.07003 -12.96611 -12.70286 -12.59116 -12.39320 -12.15786 -12.07961 -11.76456 -11.56504 -11.36045 -11.27740 -11.18121 -11.02674 -10.96376 -10.76037 -10.67788 -10.50210 -9.85808 -9.54658 -9.40412 -9.07313 -8.67509 -8.57223 -8.48478 -8.31059 -8.24595 -6.12038 -4.16369 1.62495 1.69854 1.73961 2.44408 3.28226 3.33007 3.35752 3.42313 3.65325 3.92954 4.14921 4.37665 4.51983 4.66039 4.79404 4.91416 4.94445 5.02546 5.19718 5.21225 5.24969 5.25987 5.30017 5.34420 5.46162 5.47833 5.52175 5.74950 5.81130 5.83215 5.84555 5.85993 5.91043 6.03018 6.21322 6.26275 6.34646 6.46169 6.65200 6.74960 6.77857 6.79367 6.97116 7.01975 7.11292 7.33087 7.41701 7.46049 7.64963 7.82963 7.97167 8.19254 8.35136 8.88220 9.49213 10.98376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.004005 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.436205 B = 6989.560727 C = 9597.181660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.087 0.913 4 C 0.075 3.925 5 N -0.589 5.589 6 C 0.511 3.489 7 O -0.519 6.519 8 C 0.506 3.494 9 O -0.525 6.525 10 N -0.661 5.661 11 C 0.182 3.818 12 H 0.093 0.907 13 C 0.024 3.976 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.076 4.076 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.106 4.106 28 C 0.036 3.964 29 C 0.042 3.958 30 N -0.682 5.682 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.414 0.586 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.147 0.853 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -12.190 6.305 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 H 0.105 0.895 4 C -0.049 4.049 5 N -0.324 5.324 6 C 0.294 3.706 7 O -0.394 6.394 8 C 0.286 3.714 9 O -0.405 6.405 10 N -0.310 5.310 11 C 0.079 3.921 12 H 0.111 0.889 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.087 4.087 29 C -0.088 4.088 30 N -0.311 5.311 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.084 0.916 46 H 0.164 0.836 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.667 -11.661 6.683 18.469 hybrid contribution -0.015 0.481 -0.645 0.805 sum -12.682 -11.180 6.038 17.952 Atomic orbital electron populations 1.21739 0.93293 1.02233 1.02671 1.21857 0.95837 0.98952 0.87448 0.89517 1.22400 0.79653 1.01500 1.01375 1.47905 1.06263 1.61708 1.16517 1.20388 0.88096 0.79312 0.82817 1.90744 1.75913 1.38874 1.33899 1.19911 0.86867 0.81387 0.83202 1.90460 1.76361 1.38752 1.34905 1.45907 1.08327 1.48812 1.27952 1.20458 0.78567 0.92034 1.01066 0.88917 1.19414 0.95615 0.90622 0.95693 1.21058 1.32085 0.93059 1.10135 0.92499 1.24965 0.94924 0.99078 0.94951 1.69942 1.32612 1.28766 1.21548 0.86650 0.78353 0.82997 0.80020 1.20152 1.21207 1.20180 1.20456 0.95870 0.96055 0.95284 1.20961 0.99756 0.96631 0.95278 1.21057 0.98699 0.94633 0.99794 1.21023 0.97720 0.99470 0.96853 1.21048 0.99971 0.96923 0.96141 1.21002 0.97988 0.93555 0.99894 1.23517 1.05014 0.97103 0.83075 1.22477 0.87043 1.01782 0.97509 1.60677 1.09747 1.21524 1.39175 0.91326 0.91729 0.92543 0.88343 0.91311 0.74919 0.94310 0.95480 0.92710 0.86450 0.86617 0.86740 0.86485 0.86020 0.91599 0.83622 0.89144 0.90356 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.48 37.16 0.35 -0.67 16 2 C 0.07 0.67 3.15 -67.82 -0.21 0.45 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.07 0.82 5.85 -3.84 -0.02 0.79 16 5 N -0.59 -7.93 3.02 -173.25 -0.52 -8.45 16 6 C 0.51 8.47 7.75 -11.59 -0.09 8.38 16 7 O -0.52 -9.55 15.96 5.49 0.09 -9.47 16 8 C 0.51 8.98 7.70 -11.58 -0.09 8.89 16 9 O -0.53 -9.57 12.87 5.49 0.07 -9.50 16 10 N -0.66 -12.31 4.01 -55.36 -0.22 -12.53 16 11 C 0.18 3.60 2.12 -69.08 -0.15 3.45 16 12 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 13 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 14 C -0.53 -13.80 8.84 -34.44 -0.30 -14.11 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.08 -1.36 4.91 -104.63 -0.51 -1.87 16 23 C -0.11 -1.82 9.32 -39.59 -0.37 -2.19 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 27 C -0.11 -1.74 9.67 -39.58 -0.38 -2.13 16 28 C 0.04 0.43 6.08 -3.60 -0.02 0.40 16 29 C 0.04 0.42 6.70 -3.70 -0.02 0.40 16 30 N -0.68 -6.25 6.48 -106.70 -0.69 -6.95 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 1.19 7.05 -51.93 -0.37 0.82 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.41 7.78 8.09 -40.82 -0.33 7.45 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 1.93 7.71 -52.49 -0.40 1.53 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.12 1.88 8.04 -52.49 -0.42 1.46 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.15 2.06 4.45 -54.16 -0.24 1.82 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.34 2.64 8.79 -39.29 -0.35 2.30 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -30.11 401.36 -10.29 -40.40 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.53 Total: 11.84 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.24 Total: -2.75 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.70 Total: -52.65 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.16 Total: -18.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.11 -10.29 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419481675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.133 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds