Wall clock time and date at job start Wed Apr 1 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.51788 * 2 1 4 4 C 1.52786 * 109.56679 * 240.07721 * 2 1 3 5 5 N 1.47072 * 108.76885 * 186.37204 * 4 2 1 6 6 C 1.34771 * 120.88375 * 231.12380 * 5 4 2 7 7 O 1.21353 * 119.99852 * 7.76951 * 6 5 4 8 8 C 1.49450 * 120.00192 * 187.77176 * 6 5 4 9 9 O 1.21354 * 120.00036 * 6.71237 * 8 6 5 10 10 N 1.34777 * 120.00250 * 186.71613 * 8 6 5 11 11 C 1.46503 * 120.00282 * 179.97438 * 10 8 6 12 12 H 1.08993 * 109.47105 * 325.00221 * 11 10 8 13 13 C 1.53000 * 109.46882 * 205.00220 * 11 10 8 14 14 C 1.50698 * 109.47479 * 65.00278 * 13 11 10 15 15 H 1.08004 * 119.99414 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00260 * 179.97438 * 14 13 11 17 17 N 1.31521 * 120.00026 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00205 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47000 * 59.99885 * 18 16 14 20 20 H 1.48503 * 109.47228 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47142 * 300.00285 * 18 16 14 22 22 C 1.50700 * 109.46752 * 85.00481 * 11 10 8 23 23 C 1.38224 * 120.00360 * 39.72380 * 22 11 10 24 24 C 1.38237 * 120.00170 * 179.74382 * 23 22 11 25 25 C 1.38234 * 119.99606 * 0.53083 * 24 23 22 26 26 C 1.38235 * 120.00259 * 359.74729 * 25 24 23 27 27 C 1.38235 * 119.99434 * 220.00296 * 22 11 10 28 28 C 1.47083 * 118.23829 * 50.85249 * 5 4 2 29 29 C 1.53248 * 108.51927 * 309.09059 * 28 5 4 30 30 N 1.46898 * 109.33956 * 53.82733 * 29 28 5 31 31 H 1.09000 * 109.46921 * 299.94007 * 1 2 3 32 32 H 1.09008 * 109.46640 * 59.93024 * 1 2 3 33 33 H 1.08992 * 109.47167 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.55599 * 66.55404 * 4 2 1 35 35 H 1.08998 * 109.45831 * 306.12985 * 4 2 1 36 36 H 0.97002 * 119.99657 * 359.72556 * 10 8 6 37 37 H 1.09006 * 109.46396 * 185.00147 * 13 11 10 38 38 H 1.08996 * 109.47430 * 304.99722 * 13 11 10 39 39 H 0.96997 * 119.99830 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.00409 * 0.02562 * 23 22 11 41 41 H 1.07997 * 120.00477 * 180.29842 * 24 23 22 42 42 H 1.08001 * 119.99886 * 179.76234 * 25 24 23 43 43 H 1.07995 * 120.00068 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00159 * 359.97438 * 27 22 11 45 45 H 1.08998 * 109.62782 * 68.79641 * 28 5 4 46 46 H 1.08995 * 109.63012 * 189.37970 * 28 5 4 47 47 H 1.08998 * 109.49277 * 173.78765 * 29 28 5 48 48 H 1.09001 * 109.48898 * 293.87046 * 29 28 5 49 49 H 1.00904 * 111.00049 * 61.04244 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7181 -1.2477 5 7 3.5042 -0.8433 -1.1554 6 6 4.2977 -0.4493 -2.1709 7 8 3.8227 0.1436 -3.1172 8 6 5.7626 -0.7426 -2.1318 9 8 6.2186 -1.4392 -1.2489 10 7 6.5774 -0.2333 -3.0769 11 6 8.0135 -0.5203 -3.0382 12 1 8.3452 -0.5753 -2.0015 13 6 8.7757 0.5933 -3.7592 14 6 8.6074 1.8871 -3.0050 15 1 8.0161 1.9124 -2.1015 16 6 9.2088 3.0382 -3.4677 17 7 9.9292 3.0072 -4.5677 18 14 8.9995 4.6420 -2.5332 19 1 9.5343 4.4862 -1.1567 20 1 9.7394 5.7229 -3.2329 21 1 7.5579 4.9921 -2.4674 22 6 8.2813 -1.8363 -3.7219 23 6 7.5955 -2.1682 -4.8752 24 6 7.8450 -3.3731 -5.5053 25 6 8.7723 -4.2509 -4.9758 26 6 9.4540 -3.9215 -3.8192 27 6 9.2086 -2.7141 -3.1923 28 6 4.0782 -1.4043 0.0772 29 6 3.4866 -0.6537 1.2751 30 7 2.0202 -0.6938 1.1985 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5150 -0.8895 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7788 -0.1412 -2.1344 35 1 1.5924 -1.7095 -1.3061 36 1 6.2124 0.3204 -3.7848 37 1 9.8339 0.3364 -3.8082 38 1 8.3825 0.7078 -4.7693 39 1 10.3520 3.8171 -4.8934 40 1 6.8680 -1.4842 -5.2868 41 1 7.3127 -3.6303 -6.4091 42 1 8.9645 -5.1939 -5.4659 43 1 10.1782 -4.6075 -3.4053 44 1 9.7414 -2.4566 -2.2889 45 1 3.8283 -2.4628 0.1487 46 1 5.1611 -1.2807 0.0661 47 1 3.8156 -1.1277 2.1999 48 1 3.8235 0.3828 1.2573 49 1 1.6823 -1.6441 1.2297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419481675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:58 Heat of formation + Delta-G solvation = -50.833667 kcal Electronic energy + Delta-G solvation = -30859.079800 eV Core-core repulsion = 26785.340185 eV Total energy + Delta-G solvation = -4073.739615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.14973 -40.67654 -39.64354 -38.99428 -37.08332 -35.17902 -34.65358 -33.35070 -32.64413 -31.72586 -30.61187 -28.49037 -28.22773 -26.84114 -24.71240 -23.88910 -23.73797 -23.32786 -22.09669 -21.37443 -21.07342 -18.97468 -18.54611 -18.23369 -17.65575 -17.32991 -16.83175 -16.63051 -16.28472 -16.27026 -16.10938 -16.00537 -15.60296 -15.24500 -15.05347 -14.67248 -14.53044 -14.41203 -14.22152 -14.11129 -13.81229 -13.69987 -13.47394 -13.13766 -12.97328 -12.87716 -12.66587 -12.62069 -12.46815 -12.33819 -12.19945 -12.08533 -11.98451 -11.89585 -11.65168 -11.40616 -10.71025 -10.59286 -10.39820 -10.07709 -9.78582 -9.57464 -9.19571 -8.23277 -6.33754 0.26404 0.45919 0.53141 1.21666 1.38204 1.39163 1.47032 2.05055 2.37103 2.38648 2.92570 3.10661 3.16229 3.28602 3.70846 3.90634 3.95427 3.98963 4.02680 4.08630 4.17915 4.18170 4.29903 4.35611 4.49999 4.52869 4.58606 4.63805 4.70243 4.73840 4.79526 4.89207 4.99768 5.06610 5.08361 5.10635 5.17162 5.23584 5.33009 5.37609 5.51570 5.58414 5.62018 5.73617 5.74927 5.85935 5.90527 6.10918 6.15956 6.22450 6.42558 6.61548 6.78123 6.89982 7.35267 8.87309 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.004005 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.436205 B = 6989.560727 C = 9597.181660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.075 3.925 3 H 0.065 0.935 4 C 0.073 3.927 5 N -0.581 5.581 6 C 0.508 3.492 7 O -0.546 6.546 8 C 0.505 3.495 9 O -0.531 6.531 10 N -0.665 5.665 11 C 0.199 3.801 12 H 0.078 0.922 13 C 0.037 3.963 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.273 1.273 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.124 4.124 28 C 0.036 3.964 29 C 0.050 3.950 30 N -0.677 5.677 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.411 0.589 37 H 0.014 0.986 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.113 0.887 48 H 0.060 0.940 49 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 -14.098 7.369 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 H 0.083 0.917 4 C -0.050 4.050 5 N -0.314 5.314 6 C 0.290 3.710 7 O -0.424 6.424 8 C 0.286 3.714 9 O -0.411 6.411 10 N -0.314 5.314 11 C 0.095 3.905 12 H 0.096 0.904 13 C -0.001 4.001 14 C -0.572 4.572 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.086 4.086 29 C -0.080 4.080 30 N -0.307 5.307 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.247 0.753 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.160 0.840 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.141 0.859 45 H 0.103 0.897 46 H 0.141 0.859 47 H 0.131 0.869 48 H 0.079 0.921 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.097 -13.600 7.797 21.082 hybrid contribution 0.406 0.968 -0.946 1.413 sum -13.691 -12.631 6.852 19.847 Atomic orbital electron populations 1.21692 0.91116 1.03395 1.02995 1.21816 0.97407 0.97604 0.86769 0.91655 1.22647 0.77810 1.02867 1.01718 1.48065 1.07296 1.60071 1.15966 1.20146 0.87577 0.79786 0.83466 1.90728 1.76028 1.40489 1.35107 1.20181 0.87562 0.81054 0.82618 1.90473 1.76873 1.38865 1.34875 1.45839 1.07989 1.49300 1.28315 1.19987 0.78811 0.91998 0.99701 0.90393 1.19147 0.94621 0.91412 0.94876 1.21370 1.31522 0.94262 1.10040 0.92773 1.25754 0.94707 1.02387 0.95768 1.70055 1.33680 1.29640 1.23015 0.85675 0.78349 0.79124 0.78976 1.19379 1.20668 1.19825 1.20337 0.97736 0.95668 0.96394 1.21049 1.00081 0.97877 0.95431 1.21404 0.98903 0.93689 1.00404 1.21487 0.96207 1.00416 0.96233 1.21429 1.00126 0.96230 0.96052 1.21192 0.97977 0.94592 1.00509 1.23551 1.03742 0.98375 0.82975 1.22416 0.87556 1.00631 0.97437 1.60665 1.08943 1.22444 1.38685 0.91124 0.91322 0.90937 0.89587 0.88916 0.75310 0.96772 0.97433 0.92642 0.87197 0.84021 0.83012 0.83356 0.85944 0.89739 0.85926 0.86921 0.92137 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.48 71.98 0.68 -0.94 16 2 C 0.08 1.31 3.15 44.85 0.14 1.45 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.07 1.49 5.85 86.20 0.50 2.00 16 5 N -0.58 -15.37 3.02 -820.40 -2.47 -17.84 16 6 C 0.51 17.23 7.75 87.27 0.68 17.90 16 7 O -0.55 -20.74 15.96 -3.26 -0.05 -20.79 16 8 C 0.50 18.60 7.70 87.27 0.67 19.27 16 9 O -0.53 -19.88 12.87 -3.26 -0.04 -19.93 16 10 N -0.67 -26.22 4.01 -447.43 -1.79 -28.02 16 11 C 0.20 8.32 2.12 44.24 0.09 8.41 16 12 H 0.08 3.43 7.44 -2.39 -0.02 3.41 16 13 C 0.04 1.85 4.50 29.85 0.13 1.98 16 14 C -0.53 -29.18 8.84 25.60 0.23 -28.96 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 16 C 0.01 0.72 5.46 84.65 0.46 1.18 16 17 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 18 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.10 -3.73 4.91 -19.87 -0.10 -3.83 16 23 C -0.13 -4.32 9.32 22.27 0.21 -4.12 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 25 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 26 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 27 C -0.12 -4.11 9.67 22.27 0.22 -3.90 16 28 C 0.04 0.82 6.08 86.35 0.53 1.35 16 29 C 0.05 0.92 6.70 86.39 0.58 1.50 16 30 N -0.68 -10.86 6.48 -491.50 -3.19 -14.05 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 2.04 7.05 -2.39 -0.02 2.02 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 16.54 8.09 -92.71 -0.75 15.79 16 37 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.11 3.81 7.71 -2.91 -0.02 3.79 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.12 3.88 8.04 -2.91 -0.02 3.86 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.12 3.47 4.45 -37.61 -0.17 3.31 16 47 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.35 4.32 8.79 -89.69 -0.79 3.53 16 Total: -1.00 -67.16 401.36 -0.27 -67.42 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.72 Total: 37.17 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.69 Total: 4.16 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -7.17 Total: -114.07 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.09 Total: -40.72 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.16 -0.27 -67.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419481675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.591 kcal (2) G-P(sol) polarization free energy of solvation -67.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds