Wall clock time and date at job start Wed Apr 1 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47331 * 2 1 4 4 N 1.46497 * 109.47117 * 239.99713 * 2 1 3 5 5 C 1.34777 * 120.00307 * 85.00136 * 4 2 1 6 6 O 1.21286 * 119.99487 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00244 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46853 * 40.00507 * 7 5 4 9 9 N 1.46906 * 109.46642 * 159.99809 * 7 5 4 10 10 C 1.52997 * 109.47546 * 280.00019 * 7 5 4 11 11 C 1.52994 * 109.47554 * 175.00029 * 10 7 5 12 12 C 1.50695 * 109.47537 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00312 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99482 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00257 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47146 * 59.99549 * 16 14 12 18 18 H 1.48492 * 109.47267 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47049 * 300.00194 * 16 14 12 20 20 C 1.50700 * 109.47087 * 119.99814 * 2 1 3 21 21 C 1.38311 * 119.92539 * 79.99667 * 20 2 1 22 22 C 1.38111 * 120.09048 * 180.02562 * 21 20 2 23 23 C 1.38866 * 119.89106 * 0.02562 * 22 21 20 24 24 C 1.38711 * 119.77026 * 0.22024 * 23 22 21 25 25 C 1.37863 * 119.95885 * 260.47142 * 20 2 1 26 26 C 1.50652 * 119.81478 * 180.20995 * 24 23 22 27 27 C 1.52907 * 109.52376 * 325.84004 * 26 24 23 28 28 C 1.50494 * 109.90505 * 48.57533 * 27 26 24 29 29 O 1.21289 * 119.61968 * 144.80974 * 28 27 26 30 30 N 1.34568 * 120.76822 * 324.79172 * 28 27 26 31 31 H 1.08995 * 109.46813 * 59.99851 * 1 2 3 32 32 H 1.08995 * 109.47221 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46920 * 300.00408 * 1 2 3 34 34 H 0.97001 * 120.00213 * 265.00466 * 4 2 1 35 35 H 1.00896 * 111.00699 * 296.04836 * 9 7 5 36 36 H 1.00901 * 110.99670 * 60.00428 * 9 7 5 37 37 H 1.09003 * 109.47197 * 295.00306 * 10 7 5 38 38 H 1.09000 * 109.46618 * 54.99807 * 10 7 5 39 39 H 1.09003 * 109.47095 * 300.00340 * 11 10 7 40 40 H 1.09003 * 109.46724 * 59.99832 * 11 10 7 41 41 H 0.97005 * 120.00062 * 180.02562 * 15 14 12 42 42 H 1.07997 * 119.95306 * 0.02883 * 21 20 2 43 43 H 1.08000 * 120.05064 * 180.02562 * 22 21 20 44 44 H 1.08001 * 119.88626 * 359.54177 * 25 20 2 45 45 H 1.08997 * 109.46659 * 205.82420 * 26 24 23 46 46 H 1.09001 * 109.45392 * 85.84762 * 26 24 23 47 47 H 1.08998 * 109.40348 * 288.44437 * 27 26 24 48 48 H 1.09004 * 109.40524 * 168.70820 * 27 26 24 49 49 H 0.97001 * 119.77281 * 180.79645 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6499 -0.7287 -3.5874 8 1 2.2156 -1.7274 -3.6333 9 7 2.2612 0.0298 -4.7839 10 6 4.1747 -0.8380 -3.5258 11 6 4.6750 -1.6668 -4.7105 12 6 6.1768 -1.7750 -4.6496 13 1 6.7202 -1.2997 -3.8464 14 6 6.8572 -2.4799 -5.6198 15 7 6.1955 -3.0582 -6.5981 16 14 8.7189 -2.6133 -5.5446 17 1 9.1170 -3.2740 -4.2755 18 1 9.2043 -3.4179 -6.6944 19 1 9.3154 -1.2546 -5.6035 20 6 2.0323 -0.7104 1.2305 21 6 2.0660 -2.0927 1.2638 22 6 2.5252 -2.7472 2.3899 23 6 2.9529 -2.0152 3.4897 24 6 2.9121 -0.6292 3.4527 25 6 2.4482 0.0182 2.3245 26 6 3.3802 0.1661 4.6435 27 6 3.0420 -0.5907 5.9283 28 6 3.4864 -2.0238 5.8110 29 8 3.9106 -2.6019 6.7892 30 7 3.4182 -2.6714 4.6333 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2489 -1.6318 -1.1526 35 1 1.2575 0.0610 -4.8821 36 1 2.6518 0.9599 -4.7650 37 1 4.6126 0.1593 -3.5695 38 1 4.4669 -1.3226 -2.5942 39 1 4.2371 -2.6641 -4.6669 40 1 4.3827 -1.1822 -5.6421 41 1 6.6741 -3.5544 -7.2805 42 1 1.7328 -2.6609 0.4080 43 1 2.5516 -3.8266 2.4150 44 1 2.4201 1.0974 2.2946 45 1 2.8823 1.1356 4.6513 46 1 4.4586 0.3122 4.5812 47 1 1.9654 -0.5581 6.0951 48 1 3.5518 -0.1215 6.7699 49 1 3.6976 -3.5986 4.5766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424091299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:37 Heat of formation + Delta-G solvation = -70.998907 kcal Electronic energy + Delta-G solvation = -29502.017556 eV Core-core repulsion = 25427.403511 eV Total energy + Delta-G solvation = -4074.614045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45345 -40.12123 -39.12088 -36.77656 -35.22891 -34.58023 -34.40968 -32.81095 -31.41609 -30.45465 -30.08906 -28.87739 -26.44654 -25.15329 -24.49632 -23.49543 -23.14524 -21.60596 -20.63748 -19.85725 -19.23062 -18.38961 -17.62991 -17.27595 -16.48678 -16.38119 -16.17518 -15.56010 -15.40791 -14.98922 -14.83823 -14.62320 -14.43354 -14.24294 -14.13548 -13.95279 -13.82794 -13.46607 -13.42042 -12.96274 -12.86376 -12.46945 -12.32142 -12.14544 -12.02840 -11.99204 -11.56193 -11.36425 -11.20930 -10.96057 -10.88663 -10.68390 -10.58732 -10.46714 -10.14770 -9.80942 -9.38852 -9.26610 -9.15824 -9.01734 -8.44027 -8.32444 -8.20172 -5.94834 -3.97012 0.71052 0.90289 2.08814 2.59224 2.74341 3.14456 3.35185 3.38214 3.39909 3.42392 3.87042 4.15867 4.17441 4.34836 4.47434 4.49100 4.64241 4.76217 4.85260 4.87866 4.93306 5.03549 5.13231 5.15063 5.22216 5.30496 5.40649 5.41747 5.45082 5.51010 5.55072 5.64824 5.74507 5.81399 5.83197 5.95967 6.12717 6.22643 6.40101 6.41342 6.47665 6.64000 6.73561 7.07298 7.34977 7.53396 7.56220 7.74551 7.78287 7.94890 8.11949 8.28113 8.47344 9.10812 9.66144 11.16007 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009737 B = 0.002450 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.848293 B =11424.178380 C =13546.711981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.183 3.817 3 H 0.094 0.906 4 N -0.726 5.726 5 C 0.486 3.514 6 O -0.553 6.553 7 C 0.078 3.922 8 H 0.097 0.903 9 N -0.807 5.807 10 C -0.095 4.095 11 C 0.032 3.968 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.143 4.143 23 C 0.157 3.843 24 C -0.120 4.120 25 C -0.071 4.071 26 C -0.078 4.078 27 C -0.138 4.138 28 C 0.521 3.479 29 O -0.530 6.530 30 N -0.663 5.663 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.334 0.666 36 H 0.348 0.652 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.451 4.433 22.458 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 H 0.112 0.888 4 N -0.379 5.379 5 C 0.272 3.728 6 O -0.430 6.430 7 C -0.037 4.037 8 H 0.115 0.885 9 N -0.335 5.335 10 C -0.133 4.133 11 C -0.005 4.005 12 C -0.561 4.561 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.107 4.107 21 C -0.100 4.100 22 C -0.163 4.163 23 C 0.061 3.939 24 C -0.123 4.123 25 C -0.090 4.090 26 C -0.115 4.115 27 C -0.178 4.178 28 C 0.310 3.690 29 O -0.406 6.406 30 N -0.307 5.307 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.032 4.486 22.455 26.347 hybrid contribution 0.787 -0.465 0.634 1.113 sum -12.245 4.021 23.089 26.442 Atomic orbital electron populations 1.22155 0.94317 1.02385 1.02601 1.19711 0.94011 0.96815 0.81678 0.88764 1.46346 1.67850 1.14315 1.09422 1.22769 0.76052 0.88020 0.85984 1.90642 1.50737 1.16285 1.85377 1.21842 0.99891 0.97441 0.84576 0.88486 1.58992 1.15278 1.22297 1.36889 1.21654 0.88306 1.01608 1.01771 1.19006 0.94747 0.94086 0.92687 1.21239 0.92536 1.32614 1.09761 0.93067 1.24985 0.98064 0.95742 0.95493 1.69961 1.35393 1.34597 1.13233 0.86719 0.86153 0.78071 0.77385 1.20381 1.21330 1.20308 1.19803 1.01360 0.93855 0.95730 1.20782 0.97973 0.93695 0.97504 1.20766 1.02493 1.00022 0.93040 1.17586 0.97703 0.91310 0.87311 1.19409 1.04234 0.91471 0.97163 1.20574 0.96913 1.00029 0.91451 1.20438 1.02518 0.98568 0.89968 1.21698 1.04406 0.91282 1.00385 1.20796 0.76792 0.89617 0.81809 1.90792 1.44703 1.68935 1.36148 1.43629 1.63436 1.15993 1.07645 0.91687 0.92263 0.91640 0.76294 0.85473 0.83808 0.92853 0.92857 0.96922 0.94670 0.93038 0.85238 0.85050 0.85047 0.88854 0.89695 0.87796 0.87241 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.46 37.16 0.35 -0.99 16 2 C 0.18 1.78 2.77 -69.08 -0.19 1.59 16 3 H 0.09 1.06 7.43 -51.93 -0.39 0.68 16 4 N -0.73 -8.15 5.03 -54.94 -0.28 -8.42 16 5 C 0.49 7.06 7.03 -10.99 -0.08 6.99 16 6 O -0.55 -9.45 15.91 5.55 0.09 -9.36 16 7 C 0.08 1.25 3.15 -68.87 -0.22 1.03 16 8 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 9 N -0.81 -13.08 8.44 -5.66 -0.05 -13.13 16 10 C -0.10 -1.86 4.78 -26.74 -0.13 -1.99 16 11 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.11 -0.89 4.95 -104.73 -0.52 -1.41 16 21 C -0.08 -0.62 9.05 -39.60 -0.36 -0.98 16 22 C -0.14 -1.05 9.92 -39.40 -0.39 -1.44 16 23 C 0.16 1.23 6.50 -83.81 -0.55 0.69 16 24 C -0.12 -0.89 5.65 -104.52 -0.59 -1.48 16 25 C -0.07 -0.54 9.29 -39.77 -0.37 -0.91 16 26 C -0.08 -0.42 6.00 -27.95 -0.17 -0.59 16 27 C -0.14 -0.80 6.08 -28.03 -0.17 -0.97 16 28 C 0.52 4.72 7.72 -11.18 -0.09 4.64 16 29 O -0.53 -6.77 17.91 5.55 0.10 -6.67 16 30 N -0.66 -5.20 5.36 -10.04 -0.05 -5.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.40 3.88 6.86 -40.82 -0.28 3.60 16 35 H 0.33 4.65 9.06 -39.29 -0.36 4.29 16 36 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 0.84 6.91 -52.49 -0.36 0.47 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.80 8.03 -52.49 -0.42 0.38 16 45 H 0.09 0.33 8.06 -51.93 -0.42 -0.09 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.41 2.77 8.83 -40.82 -0.36 2.41 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -35.01 405.62 -9.88 -44.90 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.52 Total: 9.74 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -4.00 Total: -8.55 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.36 Total: -52.77 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.19 Total: -16.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.01 -9.88 -44.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.101 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds