Wall clock time and date at job start Wed Apr 1 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47331 * 2 1 4 4 N 1.46497 * 109.47117 * 239.99713 * 2 1 3 5 5 C 1.34777 * 120.00307 * 85.00136 * 4 2 1 6 6 O 1.21286 * 119.99487 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00244 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46853 * 40.00507 * 7 5 4 9 9 N 1.46906 * 109.46642 * 159.99809 * 7 5 4 10 10 C 1.52997 * 109.47546 * 280.00019 * 7 5 4 11 11 C 1.52994 * 109.47554 * 175.00029 * 10 7 5 12 12 C 1.50695 * 109.47537 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00312 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99482 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00257 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47146 * 59.99549 * 16 14 12 18 18 H 1.48492 * 109.47267 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47049 * 300.00194 * 16 14 12 20 20 C 1.50700 * 109.47087 * 119.99814 * 2 1 3 21 21 C 1.38311 * 119.92539 * 79.99667 * 20 2 1 22 22 C 1.38111 * 120.09048 * 180.02562 * 21 20 2 23 23 C 1.38866 * 119.89106 * 0.02562 * 22 21 20 24 24 C 1.38711 * 119.77026 * 0.22024 * 23 22 21 25 25 C 1.37863 * 119.95885 * 260.47142 * 20 2 1 26 26 C 1.50652 * 119.81478 * 180.20995 * 24 23 22 27 27 C 1.52907 * 109.52376 * 325.84004 * 26 24 23 28 28 C 1.50494 * 109.90505 * 48.57533 * 27 26 24 29 29 O 1.21289 * 119.61968 * 144.80974 * 28 27 26 30 30 N 1.34568 * 120.76822 * 324.79172 * 28 27 26 31 31 H 1.08995 * 109.46813 * 59.99851 * 1 2 3 32 32 H 1.08995 * 109.47221 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46920 * 300.00408 * 1 2 3 34 34 H 0.97001 * 120.00213 * 265.00466 * 4 2 1 35 35 H 1.00896 * 111.00699 * 296.04836 * 9 7 5 36 36 H 1.00901 * 110.99670 * 60.00428 * 9 7 5 37 37 H 1.09003 * 109.47197 * 295.00306 * 10 7 5 38 38 H 1.09000 * 109.46618 * 54.99807 * 10 7 5 39 39 H 1.09003 * 109.47095 * 300.00340 * 11 10 7 40 40 H 1.09003 * 109.46724 * 59.99832 * 11 10 7 41 41 H 0.97005 * 120.00062 * 180.02562 * 15 14 12 42 42 H 1.07997 * 119.95306 * 0.02883 * 21 20 2 43 43 H 1.08000 * 120.05064 * 180.02562 * 22 21 20 44 44 H 1.08001 * 119.88626 * 359.54177 * 25 20 2 45 45 H 1.08997 * 109.46659 * 205.82420 * 26 24 23 46 46 H 1.09001 * 109.45392 * 85.84762 * 26 24 23 47 47 H 1.08998 * 109.40348 * 288.44437 * 27 26 24 48 48 H 1.09004 * 109.40524 * 168.70820 * 27 26 24 49 49 H 0.97001 * 119.77281 * 180.79645 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6499 -0.7287 -3.5874 8 1 2.2156 -1.7274 -3.6333 9 7 2.2612 0.0298 -4.7839 10 6 4.1747 -0.8380 -3.5258 11 6 4.6750 -1.6668 -4.7105 12 6 6.1768 -1.7750 -4.6496 13 1 6.7202 -1.2997 -3.8464 14 6 6.8572 -2.4799 -5.6198 15 7 6.1955 -3.0582 -6.5981 16 14 8.7189 -2.6133 -5.5446 17 1 9.1170 -3.2740 -4.2755 18 1 9.2043 -3.4179 -6.6944 19 1 9.3154 -1.2546 -5.6035 20 6 2.0323 -0.7104 1.2305 21 6 2.0660 -2.0927 1.2638 22 6 2.5252 -2.7472 2.3899 23 6 2.9529 -2.0152 3.4897 24 6 2.9121 -0.6292 3.4527 25 6 2.4482 0.0182 2.3245 26 6 3.3802 0.1661 4.6435 27 6 3.0420 -0.5907 5.9283 28 6 3.4864 -2.0238 5.8110 29 8 3.9106 -2.6019 6.7892 30 7 3.4182 -2.6714 4.6333 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2489 -1.6318 -1.1526 35 1 1.2575 0.0610 -4.8821 36 1 2.6518 0.9599 -4.7650 37 1 4.6126 0.1593 -3.5695 38 1 4.4669 -1.3226 -2.5942 39 1 4.2371 -2.6641 -4.6669 40 1 4.3827 -1.1822 -5.6421 41 1 6.6741 -3.5544 -7.2805 42 1 1.7328 -2.6609 0.4080 43 1 2.5516 -3.8266 2.4150 44 1 2.4201 1.0974 2.2946 45 1 2.8823 1.1356 4.6513 46 1 4.4586 0.3122 4.5812 47 1 1.9654 -0.5581 6.0951 48 1 3.5518 -0.1215 6.7699 49 1 3.6976 -3.5986 4.5766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424091299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:36 Heat of formation + Delta-G solvation = -96.085569 kcal Electronic energy + Delta-G solvation = -29503.105396 eV Core-core repulsion = 25427.403511 eV Total energy + Delta-G solvation = -4075.701884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.07326 -41.16005 -39.91668 -37.63528 -36.69034 -35.42040 -34.92523 -34.78847 -32.25931 -31.88663 -31.01299 -29.53478 -28.08345 -25.81350 -25.64859 -24.54088 -23.81947 -22.61985 -21.97993 -21.13193 -19.86373 -19.00419 -18.76785 -18.21014 -17.96074 -17.44262 -17.04139 -16.84261 -16.47243 -16.00887 -15.81900 -15.69224 -15.60481 -15.15185 -14.94496 -14.72753 -14.54803 -14.52361 -14.26368 -14.03638 -13.81490 -13.63690 -13.44289 -13.39159 -13.08186 -12.77226 -12.76936 -12.55123 -12.51458 -12.24269 -11.90434 -11.88661 -11.73095 -11.64199 -11.60371 -11.23001 -11.14948 -10.96630 -10.47165 -10.15946 -9.79656 -9.58875 -8.99467 -8.12675 -6.22572 0.08969 0.34519 1.42090 1.42722 1.44588 1.52089 1.56967 2.00534 2.20436 2.45370 2.74398 3.20398 3.32035 3.57160 3.61823 3.67583 3.78000 3.88587 4.00519 4.13452 4.18087 4.21617 4.30781 4.33871 4.36106 4.44626 4.54584 4.74474 4.81168 4.82955 4.86758 4.90031 4.95276 4.98944 5.09177 5.15371 5.23152 5.28030 5.29875 5.39475 5.58644 5.64581 5.65489 5.81915 5.87122 6.00967 6.12730 6.14548 6.32294 6.48447 6.57822 6.89169 6.96329 7.18468 7.45379 8.98234 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009737 B = 0.002450 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.848293 B =11424.178380 C =13546.711981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.185 3.815 3 H 0.080 0.920 4 N -0.712 5.712 5 C 0.493 3.507 6 O -0.579 6.579 7 C 0.085 3.915 8 H 0.110 0.890 9 N -0.820 5.820 10 C -0.081 4.081 11 C 0.040 3.960 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.957 3.043 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.113 4.113 21 C -0.087 4.087 22 C -0.145 4.145 23 C 0.145 3.855 24 C -0.123 4.123 25 C -0.074 4.074 26 C -0.075 4.075 27 C -0.133 4.133 28 C 0.516 3.484 29 O -0.576 6.576 30 N -0.659 5.659 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.410 0.590 35 H 0.347 0.653 36 H 0.345 0.655 37 H 0.041 0.959 38 H 0.066 0.934 39 H -0.006 1.006 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 4.805 23.913 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 H 0.098 0.902 4 N -0.365 5.365 5 C 0.278 3.722 6 O -0.458 6.458 7 C -0.031 4.031 8 H 0.128 0.872 9 N -0.349 5.349 10 C -0.119 4.119 11 C 0.003 3.997 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.782 3.218 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.114 4.114 21 C -0.106 4.106 22 C -0.165 4.165 23 C 0.049 3.951 24 C -0.125 4.125 25 C -0.093 4.093 26 C -0.112 4.112 27 C -0.172 4.172 28 C 0.306 3.694 29 O -0.455 6.455 30 N -0.302 5.302 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.013 0.987 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.113 4.843 23.920 27.705 hybrid contribution 0.769 -0.609 0.168 0.995 sum -12.344 4.234 24.088 27.396 Atomic orbital electron populations 1.22099 0.93274 1.02993 1.02476 1.19755 0.94760 0.96028 0.81393 0.90182 1.46254 1.66529 1.14702 1.08998 1.22270 0.76171 0.87435 0.86318 1.90637 1.52184 1.17266 1.85753 1.21634 0.97460 0.98411 0.85604 0.87211 1.58965 1.16412 1.22138 1.37354 1.21374 0.90905 0.99817 0.99853 1.18818 0.93633 0.93630 0.93659 1.21710 0.94201 1.32405 1.09847 0.92709 1.25874 1.03141 0.95393 0.95114 1.70093 1.37394 1.35430 1.14022 0.85632 0.80088 0.78296 0.77799 1.19149 1.20984 1.19648 1.19727 1.02171 0.94148 0.95359 1.20935 0.98026 0.93590 0.98042 1.20964 1.01944 1.00910 0.92706 1.17776 0.98138 0.91817 0.87342 1.19646 1.03658 0.91473 0.97759 1.20752 0.96496 1.00853 0.91167 1.20499 1.02658 0.99282 0.88752 1.21748 1.05386 0.89036 1.01058 1.21428 0.75887 0.90759 0.81307 1.90768 1.47010 1.70168 1.37579 1.43637 1.62836 1.16205 1.07571 0.93550 0.91270 0.90002 0.75208 0.84010 0.84155 0.94018 0.91543 0.98715 0.97628 0.92954 0.84124 0.83601 0.83598 0.86358 0.89838 0.86220 0.86197 0.74751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.46 71.98 0.68 -1.62 16 2 C 0.18 3.27 2.77 44.24 0.12 3.40 16 3 H 0.08 1.69 7.43 -2.39 -0.02 1.68 16 4 N -0.71 -14.81 5.03 -446.11 -2.24 -17.05 16 5 C 0.49 13.81 7.03 87.66 0.62 14.42 16 6 O -0.58 -19.38 15.91 -3.05 -0.05 -19.43 16 7 C 0.08 2.64 3.15 44.17 0.14 2.78 16 8 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 9 N -0.82 -26.57 8.44 -171.80 -1.45 -28.02 16 10 C -0.08 -3.15 4.78 30.59 0.15 -3.01 16 11 C 0.04 2.03 4.86 29.84 0.15 2.17 16 12 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 16 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 C -0.11 -1.65 4.95 -19.94 -0.10 -1.75 16 21 C -0.09 -1.16 9.05 22.26 0.20 -0.96 16 22 C -0.14 -1.86 9.92 22.39 0.22 -1.64 16 23 C 0.14 2.03 6.50 38.13 0.25 2.28 16 24 C -0.12 -1.54 5.65 -19.80 -0.11 -1.65 16 25 C -0.07 -0.95 9.29 22.15 0.21 -0.74 16 26 C -0.07 -0.62 6.00 29.80 0.18 -0.45 16 27 C -0.13 -1.28 6.08 29.75 0.18 -1.10 16 28 C 0.52 8.93 7.72 87.62 0.68 9.61 16 29 O -0.58 -14.77 17.91 -3.06 -0.05 -14.83 16 30 N -0.66 -9.71 5.36 -304.18 -1.63 -11.34 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.41 7.09 6.86 -92.71 -0.64 6.45 16 35 H 0.35 9.53 9.06 -89.70 -0.81 8.71 16 36 H 0.34 11.50 8.58 -89.69 -0.77 10.73 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 41 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.14 1.48 6.91 -2.91 -0.02 1.46 16 43 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.15 1.38 8.03 -2.91 -0.02 1.36 16 45 H 0.12 0.42 8.06 -2.39 -0.02 0.40 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.41 5.35 8.83 -92.71 -0.82 4.53 16 Total: -1.00 -75.98 405.62 -0.89 -76.87 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -2.03 Total: 31.47 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.25 Total: -7.91 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -5.04 Total: -112.33 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.10 Total: -34.25 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.98 -0.89 -76.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.213 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds