Wall clock time and date at job start Wed Apr 1 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52995 * 109.46912 * 239.99846 * 2 1 3 5 5 C 1.53000 * 109.47398 * 64.99906 * 4 2 1 6 6 O 1.42898 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46674 * 119.99719 * 2 1 3 8 8 C 1.53000 * 112.85009 * 69.67078 * 7 2 1 9 9 N 1.46502 * 109.47253 * 178.46711 * 8 7 2 10 10 S 1.65592 * 119.99901 * 164.99491 * 9 8 7 11 11 O 1.42108 * 104.27541 * 181.07181 * 10 9 8 12 12 O 1.42099 * 104.28093 * 308.92855 * 10 9 8 13 13 C 1.81404 * 104.45078 * 65.00236 * 10 9 8 14 14 C 1.52995 * 109.47428 * 173.80923 * 13 10 9 15 15 C 1.50703 * 115.54932 * 65.19118 * 14 13 10 16 16 H 1.07995 * 119.99860 * 264.78363 * 15 14 13 17 17 C 1.37871 * 119.99649 * 84.78811 * 15 14 13 18 18 N 1.31517 * 120.00217 * 352.23190 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 172.23117 * 17 15 14 20 20 H 1.48501 * 109.47378 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47387 * 120.00130 * 19 17 15 22 22 H 1.48509 * 109.47431 * 239.99719 * 19 17 15 23 23 C 1.53007 * 117.49687 * 279.52602 * 14 13 10 24 24 C 1.53006 * 117.49933 * 210.86648 * 14 13 10 25 25 C 1.53784 * 113.68640 * 200.93353 * 7 2 1 26 26 C 1.53775 * 87.08083 * 89.12773 * 25 7 2 27 27 C 1.53773 * 113.61833 * 298.46648 * 7 2 1 28 28 H 1.09001 * 109.47000 * 60.00066 * 1 2 3 29 29 H 1.08990 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46781 * 300.00709 * 1 2 3 31 31 H 1.08997 * 109.47043 * 185.00043 * 4 2 1 32 32 H 1.09000 * 109.46920 * 305.00151 * 4 2 1 33 33 H 1.08997 * 109.47135 * 300.00080 * 5 4 2 34 34 H 1.09008 * 109.46902 * 59.99888 * 5 4 2 35 35 H 0.96708 * 113.99803 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47486 * 58.46490 * 8 7 2 37 37 H 1.09001 * 109.46611 * 298.46453 * 8 7 2 38 38 H 0.97001 * 119.99359 * 345.00061 * 9 8 7 39 39 H 1.09005 * 109.47052 * 293.81038 * 13 10 9 40 40 H 1.09003 * 109.47225 * 53.80614 * 13 10 9 41 41 H 0.97002 * 119.99808 * 185.02169 * 18 17 15 42 42 H 1.08999 * 117.49711 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.49662 * 145.02566 * 23 14 13 44 44 H 1.09000 * 117.49222 * 214.97815 * 24 14 13 45 45 H 1.08994 * 117.49469 * 359.97343 * 24 14 13 46 46 H 1.09002 * 113.61054 * 203.68065 * 25 7 2 47 47 H 1.09003 * 113.61314 * 334.58014 * 25 7 2 48 48 H 1.08993 * 113.61659 * 270.88080 * 26 25 7 49 49 H 1.09004 * 113.61432 * 139.98109 * 26 25 7 50 50 H 1.09003 * 113.61410 * 25.35585 * 27 7 2 51 51 H 1.08998 * 113.61529 * 156.25198 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4953 6 8 2.1120 -0.6046 -3.6620 7 6 2.0400 -0.7212 1.2493 8 6 1.7761 -2.2279 1.2148 9 7 2.3242 -2.8475 2.4239 10 16 1.8736 -4.3846 2.8437 11 8 2.5698 -4.6349 4.0570 12 8 0.4534 -4.3560 2.8066 13 6 2.5244 -5.4274 1.5097 14 6 2.3048 -6.9004 1.8604 15 6 0.8662 -7.3420 1.9405 16 1 0.3595 -7.3610 2.8940 17 6 0.1970 -7.7218 0.7964 18 7 0.7597 -7.5551 -0.3805 19 14 -1.5089 -8.4730 0.9181 20 1 -1.9143 -8.5524 2.3446 21 1 -2.4766 -7.6270 0.1744 22 1 -1.4920 -9.8375 0.3322 23 6 3.2988 -7.5531 2.8232 24 6 3.3261 -7.9115 1.3352 25 6 3.4860 -0.3575 1.6257 26 6 2.8962 0.7891 2.4636 27 6 1.6121 -0.0508 2.5654 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2951 33 1 0.5489 0.1471 -2.5390 34 1 2.0699 1.0674 -2.4494 35 1 1.8915 -0.1586 -4.4913 36 1 2.2544 -2.6606 0.3361 37 1 0.7020 -2.4076 1.1694 38 1 2.9510 -2.3572 2.9786 39 1 2.0053 -5.1940 0.5800 40 1 3.5909 -5.2380 1.3878 41 1 0.2616 -7.7541 -1.1888 42 1 4.1094 -6.9331 3.2063 43 1 2.9123 -8.3022 3.5141 44 1 2.9573 -8.8961 1.0479 45 1 4.1540 -7.5272 0.7395 46 1 3.9872 -1.1206 2.2212 47 1 4.0848 -0.0176 0.7807 48 1 2.7682 1.7166 1.9056 49 1 3.3994 0.9351 3.4194 50 1 0.6980 0.5367 2.4792 51 1 1.6010 -0.7300 3.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451373145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:55 Heat of formation + Delta-G solvation = -93.402448 kcal Electronic energy + Delta-G solvation = -30347.795307 eV Core-core repulsion = 26375.360972 eV Total energy + Delta-G solvation = -3972.434335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.51352 -37.22870 -36.72453 -36.20071 -35.05115 -34.37016 -34.02971 -32.01818 -28.95761 -28.12595 -27.51280 -25.71265 -25.42672 -24.08445 -22.87359 -21.18991 -20.97413 -19.67309 -18.66169 -18.16065 -17.48902 -16.88945 -16.45811 -16.15546 -15.73430 -15.31637 -15.06055 -14.82393 -14.61698 -14.33252 -14.04502 -13.76544 -13.62335 -13.52071 -13.34266 -13.06732 -12.76019 -12.26244 -11.94070 -11.89780 -11.80713 -11.53951 -11.42471 -11.26688 -11.24790 -11.21313 -11.15204 -11.04438 -10.95971 -10.92453 -10.54461 -10.43264 -10.32433 -10.20080 -10.10673 -10.07258 -9.99841 -9.66938 -9.07949 -8.92633 -8.54862 -8.06052 -6.11563 -4.21918 1.12806 3.29982 3.37831 3.45217 3.52316 3.93003 4.31921 4.39349 4.47021 4.54142 4.59949 4.73148 4.76252 4.91262 5.04560 5.07069 5.16382 5.20387 5.21926 5.26315 5.30894 5.33404 5.45472 5.57927 5.62260 5.70237 5.71968 5.76361 5.77946 5.81034 5.90173 5.91826 5.93104 6.01097 6.06215 6.22191 6.24475 6.29088 6.35847 6.39844 6.44881 6.64258 6.74378 7.01170 7.25618 7.33961 7.41383 7.44738 7.83025 8.23076 8.83778 9.49119 10.96149 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.003921 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.707243 B = 7139.904429 C = 8295.037106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.058 4.058 3 H 0.075 0.925 4 C -0.122 4.122 5 C 0.075 3.925 6 O -0.574 6.574 7 C -0.080 4.080 8 C 0.128 3.872 9 N -1.132 6.132 10 S 2.607 3.393 11 O -0.977 6.977 12 O -0.951 6.951 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.082 3.918 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.208 4.208 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.377 0.623 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.407 0.593 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 19.070 -2.696 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 H 0.094 0.906 4 C -0.160 4.160 5 C -0.003 4.003 6 O -0.379 6.379 7 C -0.081 4.081 8 C 0.001 3.999 9 N -0.891 5.891 10 S 2.704 3.296 11 O -0.967 6.967 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.041 3.959 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.509 5.509 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.209 1.209 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.172 4.172 26 C -0.179 4.179 27 C -0.171 4.171 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.223 0.777 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.241 0.759 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.763 18.266 -1.763 18.733 hybrid contribution -0.430 0.214 -1.016 1.124 sum 3.333 18.481 -2.779 18.983 Atomic orbital electron populations 1.21998 0.94692 1.03029 1.01713 1.20762 0.96035 0.98839 0.92104 0.90632 1.21645 1.02193 1.00358 0.91782 1.22263 0.97639 0.94640 0.85720 1.86526 1.81198 1.53768 1.16370 1.21981 0.96872 0.94140 0.95127 1.21153 0.99628 0.92500 0.86595 1.56068 1.61676 1.34616 1.36692 1.05097 0.75099 0.73049 0.76315 1.93501 1.75872 1.84411 1.42931 1.93529 1.28640 1.84907 1.86956 1.29974 1.09093 1.11496 1.18130 1.18292 0.92552 0.85840 0.99257 1.20556 0.93967 1.46003 0.94652 0.91335 1.24949 0.97897 0.94297 0.95165 1.69990 1.36763 1.46905 0.97277 0.86528 0.83981 0.78844 0.78794 1.19231 1.20643 1.20859 1.23197 1.02856 1.05046 0.93476 1.22551 1.00625 1.01159 0.93722 1.23043 0.95687 0.98397 1.00112 1.22821 0.97550 0.97345 1.00226 1.23073 0.97830 0.98793 0.97427 0.92542 0.91646 0.92130 0.90921 0.90244 0.93393 0.94109 0.77670 0.91473 0.89891 0.75864 0.84879 0.88308 0.92782 0.90715 0.89548 0.89605 0.91541 0.89654 0.91208 0.90374 0.91555 0.91080 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.63 37.16 0.32 -1.11 16 2 C -0.06 -0.52 1.84 -90.62 -0.17 -0.69 16 3 H 0.08 0.58 7.34 -51.93 -0.38 0.20 16 4 C -0.12 -1.23 4.30 -26.73 -0.11 -1.35 16 5 C 0.07 0.67 6.80 37.16 0.25 0.92 16 6 O -0.57 -5.97 13.66 -35.23 -0.48 -6.45 16 7 C -0.08 -0.82 0.52 -153.70 -0.08 -0.90 16 8 C 0.13 1.72 4.95 -4.04 -0.02 1.70 16 9 N -1.13 -16.83 5.00 -10.61 -0.05 -16.88 16 10 S 2.61 52.90 5.19 -107.50 -0.56 52.35 16 11 O -0.98 -21.62 18.08 -57.54 -1.04 -22.66 16 12 O -0.95 -22.69 17.17 -57.54 -0.99 -23.68 16 13 C -0.55 -11.75 5.93 37.16 0.22 -11.53 16 14 C 0.04 1.06 1.32 -155.65 -0.21 0.85 16 15 C -0.51 -14.20 8.18 -34.44 -0.28 -14.48 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 18 N -0.87 -24.20 12.98 55.43 0.72 -23.48 16 19 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.21 -4.65 9.96 -26.69 -0.27 -4.91 16 24 C -0.14 -3.27 9.49 -26.69 -0.25 -3.52 16 25 C -0.13 -1.25 6.89 -25.92 -0.18 -1.43 16 26 C -0.14 -1.19 7.73 -25.92 -0.20 -1.39 16 27 C -0.13 -1.34 6.80 -25.92 -0.18 -1.52 16 28 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.06 0.70 7.06 -51.93 -0.37 0.33 16 30 H 0.06 0.52 6.53 -51.93 -0.34 0.18 16 31 H 0.07 0.75 7.87 -51.93 -0.41 0.35 16 32 H 0.08 0.94 6.88 -51.93 -0.36 0.59 16 33 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 34 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.38 2.12 9.12 45.56 0.42 2.54 16 36 H 0.07 0.88 6.69 -51.93 -0.35 0.53 16 37 H 0.08 1.23 6.68 -51.93 -0.35 0.88 16 38 H 0.41 5.17 6.02 -34.47 -0.21 4.96 16 39 H 0.13 2.93 8.14 -51.92 -0.42 2.51 16 40 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16 41 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 45 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.09 0.81 6.24 -51.93 -0.32 0.49 16 47 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 48 H 0.08 0.57 7.64 -51.93 -0.40 0.18 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.66 6.49 -51.93 -0.34 0.33 16 51 H 0.09 0.99 7.04 -51.93 -0.37 0.63 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -34.02 405.50 -10.34 -44.35 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.78 Total: 11.00 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: -1.25 Total: -37.20 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.67 Total: -40.36 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -2.51 Total: -52.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.56 Total: 52.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.02 -10.34 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451373145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.048 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds