Wall clock time and date at job start Wed Apr 1 2020 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52995 * 109.46912 * 239.99846 * 2 1 3 5 5 C 1.53000 * 109.47398 * 64.99906 * 4 2 1 6 6 O 1.42898 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46674 * 119.99719 * 2 1 3 8 8 C 1.53000 * 112.85009 * 69.67078 * 7 2 1 9 9 N 1.46502 * 109.47253 * 178.46711 * 8 7 2 10 10 S 1.65592 * 119.99901 * 164.99491 * 9 8 7 11 11 O 1.42108 * 104.27541 * 181.07181 * 10 9 8 12 12 O 1.42099 * 104.28093 * 308.92855 * 10 9 8 13 13 C 1.81404 * 104.45078 * 65.00236 * 10 9 8 14 14 C 1.52995 * 109.47428 * 173.80923 * 13 10 9 15 15 C 1.50703 * 115.54932 * 65.19118 * 14 13 10 16 16 H 1.07995 * 119.99860 * 264.78363 * 15 14 13 17 17 C 1.37871 * 119.99649 * 84.78811 * 15 14 13 18 18 N 1.31517 * 120.00217 * 352.23190 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 172.23117 * 17 15 14 20 20 H 1.48501 * 109.47378 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47387 * 120.00130 * 19 17 15 22 22 H 1.48509 * 109.47431 * 239.99719 * 19 17 15 23 23 C 1.53007 * 117.49687 * 279.52602 * 14 13 10 24 24 C 1.53006 * 117.49933 * 210.86648 * 14 13 10 25 25 C 1.53784 * 113.68640 * 200.93353 * 7 2 1 26 26 C 1.53775 * 87.08083 * 89.12773 * 25 7 2 27 27 C 1.53773 * 113.61833 * 298.46648 * 7 2 1 28 28 H 1.09001 * 109.47000 * 60.00066 * 1 2 3 29 29 H 1.08990 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46781 * 300.00709 * 1 2 3 31 31 H 1.08997 * 109.47043 * 185.00043 * 4 2 1 32 32 H 1.09000 * 109.46920 * 305.00151 * 4 2 1 33 33 H 1.08997 * 109.47135 * 300.00080 * 5 4 2 34 34 H 1.09008 * 109.46902 * 59.99888 * 5 4 2 35 35 H 0.96708 * 113.99803 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47486 * 58.46490 * 8 7 2 37 37 H 1.09001 * 109.46611 * 298.46453 * 8 7 2 38 38 H 0.97001 * 119.99359 * 345.00061 * 9 8 7 39 39 H 1.09005 * 109.47052 * 293.81038 * 13 10 9 40 40 H 1.09003 * 109.47225 * 53.80614 * 13 10 9 41 41 H 0.97002 * 119.99808 * 185.02169 * 18 17 15 42 42 H 1.08999 * 117.49711 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.49662 * 145.02566 * 23 14 13 44 44 H 1.09000 * 117.49222 * 214.97815 * 24 14 13 45 45 H 1.08994 * 117.49469 * 359.97343 * 24 14 13 46 46 H 1.09002 * 113.61054 * 203.68065 * 25 7 2 47 47 H 1.09003 * 113.61314 * 334.58014 * 25 7 2 48 48 H 1.08993 * 113.61659 * 270.88080 * 26 25 7 49 49 H 1.09004 * 113.61432 * 139.98109 * 26 25 7 50 50 H 1.09003 * 113.61410 * 25.35585 * 27 7 2 51 51 H 1.08998 * 113.61529 * 156.25198 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4953 6 8 2.1120 -0.6046 -3.6620 7 6 2.0400 -0.7212 1.2493 8 6 1.7761 -2.2279 1.2148 9 7 2.3242 -2.8475 2.4239 10 16 1.8736 -4.3846 2.8437 11 8 2.5698 -4.6349 4.0570 12 8 0.4534 -4.3560 2.8066 13 6 2.5244 -5.4274 1.5097 14 6 2.3048 -6.9004 1.8604 15 6 0.8662 -7.3420 1.9405 16 1 0.3595 -7.3610 2.8940 17 6 0.1970 -7.7218 0.7964 18 7 0.7597 -7.5551 -0.3805 19 14 -1.5089 -8.4730 0.9181 20 1 -1.9143 -8.5524 2.3446 21 1 -2.4766 -7.6270 0.1744 22 1 -1.4920 -9.8375 0.3322 23 6 3.2988 -7.5531 2.8232 24 6 3.3261 -7.9115 1.3352 25 6 3.4860 -0.3575 1.6257 26 6 2.8962 0.7891 2.4636 27 6 1.6121 -0.0508 2.5654 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2951 33 1 0.5489 0.1471 -2.5390 34 1 2.0699 1.0674 -2.4494 35 1 1.8915 -0.1586 -4.4913 36 1 2.2544 -2.6606 0.3361 37 1 0.7020 -2.4076 1.1694 38 1 2.9510 -2.3572 2.9786 39 1 2.0053 -5.1940 0.5800 40 1 3.5909 -5.2380 1.3878 41 1 0.2616 -7.7541 -1.1888 42 1 4.1094 -6.9331 3.2063 43 1 2.9123 -8.3022 3.5141 44 1 2.9573 -8.8961 1.0479 45 1 4.1540 -7.5272 0.7395 46 1 3.9872 -1.1206 2.2212 47 1 4.0848 -0.0176 0.7807 48 1 2.7682 1.7166 1.9056 49 1 3.3994 0.9351 3.4194 50 1 0.6980 0.5367 2.4792 51 1 1.6010 -0.7300 3.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451373145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:53 Heat of formation + Delta-G solvation = -117.976582 kcal Electronic energy + Delta-G solvation = -30348.860922 eV Core-core repulsion = 26375.360972 eV Total energy + Delta-G solvation = -3973.499950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.32582 -38.57813 -37.96599 -37.93482 -36.80319 -35.38288 -34.97424 -34.09629 -29.86567 -29.70738 -28.47344 -27.50130 -26.47892 -24.91665 -23.66357 -23.00747 -21.78910 -21.44420 -20.23380 -19.04515 -18.63425 -18.34254 -17.98459 -17.31352 -16.84921 -16.73424 -16.47954 -16.18989 -16.01492 -15.65052 -15.33991 -14.93820 -14.88956 -14.61265 -14.26598 -14.19243 -13.77301 -13.68043 -13.59417 -13.15087 -13.09560 -12.98192 -12.91495 -12.86547 -12.82238 -12.45615 -12.43773 -12.32534 -12.22236 -12.08645 -11.95636 -11.91836 -11.85718 -11.55517 -11.07838 -10.97133 -10.88690 -10.88460 -10.71980 -10.56281 -10.37563 -9.86646 -8.20321 -6.35076 -0.51145 1.35627 1.38807 1.50175 2.04462 2.38643 2.92218 3.06704 3.25701 3.36526 3.43895 3.53814 3.74581 3.80079 3.96375 4.00716 4.02205 4.14675 4.28703 4.34416 4.40416 4.48411 4.49948 4.53834 4.58799 4.61170 4.68373 4.71878 4.82984 4.83230 4.88673 4.93565 4.95599 4.96391 5.08667 5.10065 5.15937 5.18316 5.19931 5.22024 5.42230 5.45436 5.48601 5.57312 5.57414 5.65579 5.70692 6.17012 6.21539 6.71211 6.95789 7.37278 8.86882 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.003921 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.707243 B = 7139.904429 C = 8295.037106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.049 4.049 3 H 0.101 0.899 4 C -0.124 4.124 5 C 0.074 3.926 6 O -0.601 6.601 7 C -0.080 4.080 8 C 0.120 3.880 9 N -1.111 6.111 10 S 2.625 3.375 11 O -0.996 6.996 12 O -0.993 6.993 13 C -0.552 4.552 14 C 0.009 3.991 15 C -0.533 4.533 16 H 0.048 0.952 17 C 0.043 3.957 18 N -0.892 5.892 19 Si 0.936 3.064 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.271 1.271 23 C -0.196 4.196 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.142 4.142 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.420 0.580 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 21.348 -3.135 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.068 4.068 3 H 0.119 0.881 4 C -0.161 4.161 5 C -0.003 4.003 6 O -0.410 6.410 7 C -0.081 4.081 8 C -0.006 4.006 9 N -0.874 5.874 10 S 2.722 3.278 11 O -0.986 6.986 12 O -0.982 6.982 13 C -0.685 4.685 14 C 0.007 3.993 15 C -0.570 4.570 16 H 0.066 0.934 17 C -0.160 4.160 18 N -0.528 5.528 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.233 4.233 24 C -0.177 4.177 25 C -0.173 4.173 26 C -0.166 4.166 27 C -0.180 4.180 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.115 0.885 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.877 20.541 -2.203 21.227 hybrid contribution -0.766 -0.475 -0.889 1.266 sum 4.111 20.065 -3.092 20.714 Atomic orbital electron populations 1.22017 0.94977 1.01784 1.02815 1.20727 0.95712 0.99642 0.90680 0.88067 1.21639 1.01827 0.99439 0.93235 1.22320 0.98184 0.95163 0.84680 1.86470 1.81611 1.55080 1.17804 1.22059 0.98264 0.91625 0.96201 1.21330 0.98430 0.95135 0.85694 1.55524 1.61788 1.32634 1.37465 1.04269 0.74020 0.73849 0.75667 1.93461 1.75884 1.85305 1.43964 1.93475 1.31434 1.85924 1.87415 1.29871 1.11167 1.09755 1.17700 1.18435 0.91624 0.87772 1.01493 1.20714 0.95865 1.46536 0.93921 0.93371 1.25524 1.00748 0.94704 0.95063 1.70036 1.37765 1.47509 0.97522 0.85842 0.80814 0.78757 0.78478 1.19698 1.20165 1.19592 1.23248 1.02454 1.04605 0.92996 1.22507 1.00646 0.99926 0.94659 1.23076 0.94826 0.98736 1.00678 1.22795 0.95803 0.97399 1.00595 1.23111 0.99369 0.99067 0.96428 0.90965 0.94085 0.91523 0.91183 0.92969 0.92750 0.91793 0.75513 0.91204 0.91875 0.74220 0.86145 0.85009 0.92553 0.88308 0.89857 0.91506 0.89457 0.90119 0.89981 0.88503 0.90939 0.90372 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.63 71.98 0.62 -2.08 16 2 C -0.05 -0.77 1.84 -10.79 -0.02 -0.79 16 3 H 0.10 1.16 7.34 -2.39 -0.02 1.15 16 4 C -0.12 -2.35 4.30 30.59 0.13 -2.22 16 5 C 0.07 1.17 6.80 71.98 0.49 1.66 16 6 O -0.60 -11.74 13.66 -148.98 -2.04 -13.78 16 7 C -0.08 -1.54 0.52 -51.66 -0.03 -1.56 16 8 C 0.12 3.24 4.95 86.38 0.43 3.67 16 9 N -1.11 -32.71 5.00 -187.48 -0.94 -33.64 16 10 S 2.63 107.47 5.19 -56.49 -0.29 107.18 16 11 O -1.00 -43.80 18.08 -127.65 -2.31 -46.11 16 12 O -0.99 -48.99 17.17 -127.65 -2.19 -51.18 16 13 C -0.55 -23.36 5.93 71.98 0.43 -22.93 16 14 C 0.01 0.44 1.32 -52.92 -0.07 0.37 16 15 C -0.53 -30.08 8.18 25.60 0.21 -29.87 16 16 H 0.05 2.83 7.83 -2.91 -0.02 2.81 16 17 C 0.04 2.37 5.38 84.65 0.46 2.82 16 18 N -0.89 -49.99 12.98 21.45 0.28 -49.71 16 19 Si 0.94 44.73 29.55 68.60 2.03 46.75 16 20 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C -0.20 -8.58 9.96 30.62 0.30 -8.27 16 24 C -0.14 -6.32 9.49 30.62 0.29 -6.03 16 25 C -0.14 -2.16 6.89 31.12 0.21 -1.95 16 26 C -0.13 -1.75 7.73 31.12 0.24 -1.51 16 27 C -0.14 -2.62 6.80 31.12 0.21 -2.41 16 28 H 0.07 0.98 6.57 -2.39 -0.02 0.97 16 29 H 0.04 0.89 7.06 -2.39 -0.02 0.87 16 30 H 0.07 1.04 6.53 -2.38 -0.02 1.02 16 31 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 32 H 0.05 1.26 6.88 -2.39 -0.02 1.24 16 33 H 0.05 0.78 6.56 -2.39 -0.02 0.76 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.40 3.86 9.12 -74.05 -0.68 3.18 16 36 H 0.07 1.85 6.69 -2.39 -0.02 1.83 16 37 H 0.06 1.97 6.68 -2.39 -0.02 1.95 16 38 H 0.42 10.25 6.02 -96.74 -0.58 9.66 16 39 H 0.12 5.40 8.14 -2.39 -0.02 5.38 16 40 H 0.13 4.55 8.09 -2.39 -0.02 4.53 16 41 H 0.27 14.10 8.32 -92.71 -0.77 13.33 16 42 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.08 1.36 6.24 -2.39 -0.01 1.34 16 47 H 0.08 1.14 7.88 -2.39 -0.02 1.12 16 48 H 0.10 1.00 7.64 -2.39 -0.02 0.98 16 49 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.08 1.31 6.49 -2.39 -0.02 1.30 16 51 H 0.07 1.54 7.04 -2.39 -0.02 1.53 16 Total: -1.00 -73.79 405.50 -1.87 -75.66 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.32 Total: 35.92 kcal Atomic # 6 Polarization: -75.01 SS G_CDS: 3.91 Total: -71.10 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.66 Total: -83.35 kcal Atomic # 8 Polarization: -104.53 SS G_CDS: -6.53 Total: -111.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 107.47 SS G_CDS: -0.29 Total: 107.18 kcal Total: -73.79 -1.87 -75.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451373145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.312 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds