Wall clock time and date at job start Wed Apr 1 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.51708 * 2 1 4 4 C 1.53244 * 109.49189 * 239.93466 * 2 1 3 5 5 N 1.47080 * 108.51868 * 186.21271 * 4 2 1 6 6 C 1.34779 * 120.87752 * 231.18803 * 5 4 2 7 7 O 1.21359 * 120.00589 * 6.87163 * 6 5 4 8 8 C 1.49365 * 119.99595 * 186.87413 * 6 5 4 9 9 O 1.21372 * 120.00107 * 6.52228 * 8 6 5 10 10 N 1.34774 * 119.99570 * 186.52671 * 8 6 5 11 11 C 1.39741 * 119.99684 * 175.49764 * 10 8 6 12 12 C 1.39337 * 119.95409 * 35.36413 * 11 10 8 13 13 C 1.38475 * 120.42637 * 179.97438 * 12 11 10 14 14 C 1.37695 * 120.32694 * 0.02562 * 13 12 11 15 15 C 1.40753 * 119.89520 * 359.73061 * 14 13 12 16 16 C 1.41408 * 120.20685 * 180.29158 * 15 14 13 17 17 H 1.07998 * 119.99823 * 205.11611 * 16 15 14 18 18 C 1.39928 * 119.99945 * 25.11849 * 16 15 14 19 19 N 1.30830 * 120.00458 * 14.65934 * 18 16 15 20 20 Si 1.86804 * 119.99858 * 194.65348 * 18 16 15 21 21 H 1.48503 * 109.46821 * 90.00291 * 20 18 16 22 22 H 1.48506 * 109.47092 * 209.99702 * 20 18 16 23 23 H 1.48493 * 109.47306 * 329.99975 * 20 18 16 24 24 C 1.38307 * 119.95409 * 215.38118 * 11 10 8 25 25 C 1.47082 * 118.23900 * 51.45705 * 5 4 2 26 26 C 1.53690 * 108.27481 * 308.48494 * 25 5 4 27 27 H 1.09002 * 109.65250 * 294.07278 * 26 25 5 28 28 C 1.53008 * 109.44101 * 173.96152 * 26 25 5 29 29 N 1.46896 * 109.26058 * 54.08231 * 26 25 5 30 30 C 1.46897 * 111.00169 * 172.60661 * 29 26 25 31 31 H 1.08992 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46942 * 300.06628 * 1 2 3 33 33 H 1.09007 * 109.46933 * 60.06128 * 1 2 3 34 34 H 1.09003 * 109.62944 * 66.50620 * 4 2 1 35 35 H 1.09000 * 109.78744 * 306.01493 * 4 2 1 36 36 H 0.97001 * 120.00325 * 355.50026 * 10 8 6 37 37 H 1.08001 * 119.78821 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.83706 * 180.02562 * 13 12 11 39 39 H 1.07992 * 120.05386 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00575 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.16040 * 359.97438 * 24 11 10 42 42 H 1.08997 * 109.62413 * 68.25155 * 25 5 4 43 43 H 1.09002 * 109.62786 * 188.83036 * 25 5 4 44 44 H 1.08997 * 109.46981 * 300.26451 * 28 26 25 45 45 H 1.08995 * 109.46867 * 60.26386 * 28 26 25 46 46 H 1.09000 * 109.47084 * 180.26375 * 28 26 25 47 47 H 1.09005 * 109.47060 * 184.30129 * 30 29 26 48 48 H 1.09004 * 109.47346 * 304.30124 * 30 29 26 49 49 H 1.08997 * 109.47363 * 64.29810 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2503 5 7 3.5042 -0.8432 -1.1554 6 6 4.2977 -0.4490 -2.1710 7 8 3.8194 0.1252 -3.1272 8 6 5.7659 -0.7188 -2.1196 9 8 6.2277 -1.3949 -1.2237 10 7 6.5778 -0.2113 -3.0681 11 6 7.9610 -0.3840 -2.9692 12 6 8.4787 -1.5646 -2.4404 13 6 9.8477 -1.7463 -2.3383 14 6 10.7130 -0.7609 -2.7582 15 6 10.2050 0.4350 -3.2993 16 6 11.0878 1.4487 -3.7382 17 1 10.7579 2.4767 -3.7669 18 6 12.3886 1.1199 -4.1354 19 7 12.7034 -0.1267 -4.3770 20 14 13.6757 2.4611 -4.3207 21 1 14.3839 2.6493 -3.0291 22 1 14.6525 2.0683 -5.3681 23 1 13.0140 3.7315 -4.7123 24 6 8.8142 0.6174 -3.3959 25 6 4.0779 -1.4099 0.0747 26 6 3.4866 -0.6537 1.2750 27 1 3.8235 0.3828 1.2574 28 6 3.9484 -1.3186 2.5734 29 7 2.0202 -0.6939 1.1984 30 6 1.4140 -0.1360 2.4146 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.7777 -0.1502 -2.1389 35 1 1.5960 -1.7168 -1.3098 36 1 6.2021 0.2738 -3.8194 37 1 7.8079 -2.3434 -2.1087 38 1 10.2386 -2.6653 -1.9273 39 1 11.7799 -0.9074 -2.6769 40 1 13.6053 -0.3547 -4.6520 41 1 8.4142 1.5329 -3.8061 42 1 3.8242 -2.4677 0.1434 43 1 5.1612 -1.2902 0.0624 44 1 3.6122 -2.3552 2.5903 45 1 5.0365 -1.2885 2.6299 46 1 3.5256 -0.7855 3.4249 47 1 0.3308 -0.2474 2.3647 48 1 1.7941 -0.6677 3.2869 49 1 1.6672 0.9211 2.4948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453774489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:02 Heat of formation + Delta-G solvation = -15.546121 kcal Electronic energy + Delta-G solvation = -30377.833244 eV Core-core repulsion = 26305.623812 eV Total energy + Delta-G solvation = -4072.209432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.05485 -39.56825 -38.36002 -37.26885 -35.36817 -34.33455 -33.95969 -33.10040 -29.90967 -29.80696 -28.64736 -27.65736 -27.20824 -25.42002 -25.19855 -23.32735 -21.68782 -21.20051 -20.81660 -20.14308 -19.48789 -17.88197 -17.50516 -16.89089 -16.34682 -16.00818 -15.70179 -15.52415 -15.40444 -14.99031 -14.69160 -14.46809 -14.18544 -14.16965 -13.58170 -13.35214 -13.24493 -13.02987 -12.92932 -12.57308 -12.42037 -12.30797 -12.08058 -11.93290 -11.78873 -11.74395 -11.56406 -11.34372 -11.20784 -11.18902 -11.07904 -10.94159 -10.68179 -10.54128 -10.13219 -9.84302 -9.43054 -9.11409 -9.01920 -8.82399 -8.54369 -7.53224 -7.04141 -6.77218 -4.42609 1.44175 2.34864 2.75645 2.81537 3.05835 3.09150 3.18115 3.38992 3.51818 3.66998 3.91113 4.41086 4.51963 4.55287 4.60908 4.70653 4.86341 4.93968 5.03937 5.14120 5.20905 5.25265 5.38094 5.39661 5.45080 5.54651 5.62352 5.64461 5.67583 5.73837 5.84906 5.88463 6.04924 6.14390 6.21205 6.48563 6.61267 6.69208 6.77948 6.83484 6.87208 6.97575 7.06109 7.20125 7.43674 7.48051 7.69707 7.91424 7.97105 8.03850 8.19274 8.34047 8.58820 8.84222 8.89274 10.16644 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.002210 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.718048 B =12664.636102 C =12973.482441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.046 0.954 4 C 0.118 3.882 5 N -0.587 5.587 6 C 0.511 3.489 7 O -0.525 6.525 8 C 0.500 3.500 9 O -0.498 6.498 10 N -0.627 5.627 11 C 0.139 3.861 12 C -0.221 4.221 13 C -0.098 4.098 14 C -0.160 4.160 15 C 0.119 3.881 16 C -0.461 4.461 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.237 4.237 25 C 0.079 3.921 26 C 0.066 3.934 27 H 0.044 0.956 28 C -0.146 4.146 29 N -0.534 5.534 30 C 0.016 3.984 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.413 0.587 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.281 0.719 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.149 0.851 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.890 -1.230 10.152 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 H 0.064 0.936 4 C -0.005 4.005 5 N -0.320 5.320 6 C 0.294 3.706 7 O -0.402 6.402 8 C 0.282 3.718 9 O -0.375 6.375 10 N -0.271 5.271 11 C 0.048 3.952 12 C -0.242 4.242 13 C -0.117 4.117 14 C -0.180 4.180 15 C 0.116 3.884 16 C -0.491 4.491 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.259 4.259 25 C -0.042 4.042 26 C -0.043 4.043 27 H 0.062 0.938 28 C -0.204 4.204 29 N -0.260 5.260 30 C -0.131 4.131 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.165 0.835 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.777 -2.015 10.125 21.428 hybrid contribution 0.527 1.632 -0.425 1.767 sum -18.250 -0.383 9.700 20.671 Atomic orbital electron populations 1.21867 0.93264 1.02967 1.02267 1.21987 0.95943 0.95862 0.90336 0.93624 1.21872 0.78782 1.01703 0.98115 1.47989 1.06583 1.60817 1.16606 1.20261 0.87850 0.79416 0.83042 1.90734 1.75951 1.40244 1.33225 1.19969 0.86976 0.81787 0.83081 1.90480 1.75717 1.37395 1.33912 1.43188 1.06210 1.53159 1.24499 1.17468 0.79003 0.95528 1.03184 1.20450 0.95076 0.97008 1.11667 1.20620 0.92810 0.98113 1.00175 1.21510 0.99650 0.95005 1.01789 1.17384 0.90109 0.92682 0.88218 1.19537 0.95747 0.95151 1.38685 0.90422 1.25896 0.99372 0.96270 0.92727 1.69800 1.20917 1.18734 1.32728 0.86269 0.79947 0.81473 0.78763 1.19288 1.20304 1.18662 1.20747 0.93483 0.98260 1.13371 1.23223 1.03409 0.97392 0.80199 1.22170 0.86994 0.98736 0.96401 0.93764 1.21863 1.01761 1.01435 0.95296 1.62071 1.06497 1.55327 1.02141 1.22521 1.00317 0.97432 0.92860 0.91373 0.91934 0.91738 0.88482 0.90230 0.75083 0.87423 0.88807 0.85854 0.90838 0.88439 0.90512 0.83476 0.91425 0.91299 0.92148 0.90957 0.90677 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.72 37.16 0.32 -0.67 16 2 C 0.07 0.63 2.60 -67.59 -0.18 0.46 16 3 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 4 C 0.12 1.27 5.90 -3.60 -0.02 1.24 16 5 N -0.59 -7.73 3.00 -172.72 -0.52 -8.25 16 6 C 0.51 8.02 7.75 -11.62 -0.09 7.93 16 7 O -0.53 -8.92 15.95 5.49 0.09 -8.83 16 8 C 0.50 8.80 7.59 -11.63 -0.09 8.71 16 9 O -0.50 -9.30 10.59 5.48 0.06 -9.24 16 10 N -0.63 -11.70 5.32 -10.34 -0.05 -11.76 16 11 C 0.14 3.10 6.28 -83.82 -0.53 2.57 16 12 C -0.22 -5.05 8.70 -39.09 -0.34 -5.39 16 13 C -0.10 -2.30 10.02 -39.69 -0.40 -2.70 16 14 C -0.16 -4.09 8.69 -38.83 -0.34 -4.43 16 15 C 0.12 3.11 5.58 -106.85 -0.60 2.51 16 16 C -0.46 -11.96 9.06 -37.74 -0.34 -12.31 16 17 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 18 C 0.07 1.84 5.20 -17.35 -0.09 1.75 16 19 N -0.80 -20.17 10.81 55.55 0.60 -19.57 16 20 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.24 -5.66 9.71 -38.67 -0.38 -6.03 16 25 C 0.08 0.97 5.46 -3.37 -0.02 0.95 16 26 C 0.07 0.69 2.62 -67.35 -0.18 0.51 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 C -0.15 -1.25 8.73 37.16 0.32 -0.93 16 29 N -0.53 -5.00 4.57 -226.32 -1.04 -6.04 16 30 C 0.02 0.12 8.56 60.06 0.51 0.64 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.38 6.33 -51.93 -0.33 0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.41 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.11 2.38 6.23 -52.49 -0.33 2.05 16 38 H 0.09 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.12 3.24 6.08 -52.49 -0.32 2.92 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.15 2.12 4.35 -54.73 -0.24 1.88 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.45 6.23 -51.93 -0.32 0.12 16 47 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 48 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 49 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -28.29 384.60 -9.58 -37.86 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.07 Total: 11.85 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.41 Total: -5.18 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -1.01 Total: -45.61 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.15 Total: -18.08 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.29 -9.58 -37.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453774489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.318 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds