Wall clock time and date at job start Wed Apr 1 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.51708 * 2 1 4 4 C 1.53244 * 109.49189 * 239.93466 * 2 1 3 5 5 N 1.47080 * 108.51868 * 186.21271 * 4 2 1 6 6 C 1.34779 * 120.87752 * 231.18803 * 5 4 2 7 7 O 1.21359 * 120.00589 * 6.87163 * 6 5 4 8 8 C 1.49365 * 119.99595 * 186.87413 * 6 5 4 9 9 O 1.21372 * 120.00107 * 6.52228 * 8 6 5 10 10 N 1.34774 * 119.99570 * 186.52671 * 8 6 5 11 11 C 1.39741 * 119.99684 * 175.49764 * 10 8 6 12 12 C 1.39337 * 119.95409 * 35.36413 * 11 10 8 13 13 C 1.38475 * 120.42637 * 179.97438 * 12 11 10 14 14 C 1.37695 * 120.32694 * 0.02562 * 13 12 11 15 15 C 1.40753 * 119.89520 * 359.73061 * 14 13 12 16 16 C 1.41408 * 120.20685 * 180.29158 * 15 14 13 17 17 H 1.07998 * 119.99823 * 205.11611 * 16 15 14 18 18 C 1.39928 * 119.99945 * 25.11849 * 16 15 14 19 19 N 1.30830 * 120.00458 * 14.65934 * 18 16 15 20 20 Si 1.86804 * 119.99858 * 194.65348 * 18 16 15 21 21 H 1.48503 * 109.46821 * 90.00291 * 20 18 16 22 22 H 1.48506 * 109.47092 * 209.99702 * 20 18 16 23 23 H 1.48493 * 109.47306 * 329.99975 * 20 18 16 24 24 C 1.38307 * 119.95409 * 215.38118 * 11 10 8 25 25 C 1.47082 * 118.23900 * 51.45705 * 5 4 2 26 26 C 1.53690 * 108.27481 * 308.48494 * 25 5 4 27 27 H 1.09002 * 109.65250 * 294.07278 * 26 25 5 28 28 C 1.53008 * 109.44101 * 173.96152 * 26 25 5 29 29 N 1.46896 * 109.26058 * 54.08231 * 26 25 5 30 30 C 1.46897 * 111.00169 * 172.60661 * 29 26 25 31 31 H 1.08992 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46942 * 300.06628 * 1 2 3 33 33 H 1.09007 * 109.46933 * 60.06128 * 1 2 3 34 34 H 1.09003 * 109.62944 * 66.50620 * 4 2 1 35 35 H 1.09000 * 109.78744 * 306.01493 * 4 2 1 36 36 H 0.97001 * 120.00325 * 355.50026 * 10 8 6 37 37 H 1.08001 * 119.78821 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.83706 * 180.02562 * 13 12 11 39 39 H 1.07992 * 120.05386 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00575 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.16040 * 359.97438 * 24 11 10 42 42 H 1.08997 * 109.62413 * 68.25155 * 25 5 4 43 43 H 1.09002 * 109.62786 * 188.83036 * 25 5 4 44 44 H 1.08997 * 109.46981 * 300.26451 * 28 26 25 45 45 H 1.08995 * 109.46867 * 60.26386 * 28 26 25 46 46 H 1.09000 * 109.47084 * 180.26375 * 28 26 25 47 47 H 1.09005 * 109.47060 * 184.30129 * 30 29 26 48 48 H 1.09004 * 109.47346 * 304.30124 * 30 29 26 49 49 H 1.08997 * 109.47363 * 64.29810 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2503 5 7 3.5042 -0.8432 -1.1554 6 6 4.2977 -0.4490 -2.1710 7 8 3.8194 0.1252 -3.1272 8 6 5.7659 -0.7188 -2.1196 9 8 6.2277 -1.3949 -1.2237 10 7 6.5778 -0.2113 -3.0681 11 6 7.9610 -0.3840 -2.9692 12 6 8.4787 -1.5646 -2.4404 13 6 9.8477 -1.7463 -2.3383 14 6 10.7130 -0.7609 -2.7582 15 6 10.2050 0.4350 -3.2993 16 6 11.0878 1.4487 -3.7382 17 1 10.7579 2.4767 -3.7669 18 6 12.3886 1.1199 -4.1354 19 7 12.7034 -0.1267 -4.3770 20 14 13.6757 2.4611 -4.3207 21 1 14.3839 2.6493 -3.0291 22 1 14.6525 2.0683 -5.3681 23 1 13.0140 3.7315 -4.7123 24 6 8.8142 0.6174 -3.3959 25 6 4.0779 -1.4099 0.0747 26 6 3.4866 -0.6537 1.2750 27 1 3.8235 0.3828 1.2574 28 6 3.9484 -1.3186 2.5734 29 7 2.0202 -0.6939 1.1984 30 6 1.4140 -0.1360 2.4146 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.7777 -0.1502 -2.1389 35 1 1.5960 -1.7168 -1.3098 36 1 6.2021 0.2738 -3.8194 37 1 7.8079 -2.3434 -2.1087 38 1 10.2386 -2.6653 -1.9273 39 1 11.7799 -0.9074 -2.6769 40 1 13.6053 -0.3547 -4.6520 41 1 8.4142 1.5329 -3.8061 42 1 3.8242 -2.4677 0.1434 43 1 5.1612 -1.2902 0.0624 44 1 3.6122 -2.3552 2.5903 45 1 5.0365 -1.2885 2.6299 46 1 3.5256 -0.7855 3.4249 47 1 0.3308 -0.2474 2.3647 48 1 1.7941 -0.6677 3.2869 49 1 1.6672 0.9211 2.4948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453774489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:01 Heat of formation + Delta-G solvation = -32.830530 kcal Electronic energy + Delta-G solvation = -30378.582753 eV Core-core repulsion = 26305.623812 eV Total energy + Delta-G solvation = -4072.958940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.33189 -40.76356 -39.58475 -38.95030 -36.71042 -35.74279 -34.85798 -34.73269 -31.79948 -30.69266 -30.25937 -28.50682 -28.05654 -27.22760 -26.37000 -24.51483 -23.03335 -22.53458 -22.27187 -21.30146 -20.71100 -19.53467 -18.88000 -18.13466 -17.46721 -17.24285 -17.15985 -16.82735 -16.66160 -16.39027 -16.22707 -15.61360 -15.45668 -15.17071 -14.86758 -14.69622 -14.52800 -14.23829 -14.07556 -13.84182 -13.59388 -13.36997 -13.19473 -13.10534 -12.97127 -12.83947 -12.63346 -12.54948 -12.50896 -12.39266 -12.23177 -12.09215 -11.99540 -11.88664 -11.73637 -11.59295 -11.21422 -10.88999 -10.26250 -10.03099 -9.43538 -9.35232 -8.85567 -8.62107 -6.38424 0.05265 0.94109 0.96855 1.18925 1.40443 1.53027 1.53750 2.00040 2.21546 2.31677 2.73749 2.80962 3.12864 3.67883 3.68651 3.70355 3.97658 4.06364 4.08627 4.25221 4.39424 4.45126 4.48514 4.56429 4.61594 4.63629 4.71946 4.77293 4.80090 4.87943 4.95202 4.97967 4.99610 5.02245 5.03210 5.09429 5.13808 5.19090 5.28874 5.31656 5.35368 5.66258 5.70363 5.83515 6.00248 6.02794 6.06895 6.08746 6.15690 6.37297 6.57252 6.64350 6.82483 6.91850 7.00281 8.34012 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.002210 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.718048 B =12664.636102 C =12973.482441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.030 0.970 4 C 0.115 3.885 5 N -0.579 5.579 6 C 0.515 3.485 7 O -0.541 6.541 8 C 0.501 3.499 9 O -0.508 6.508 10 N -0.628 5.628 11 C 0.151 3.849 12 C -0.227 4.227 13 C -0.097 4.097 14 C -0.186 4.186 15 C 0.092 3.908 16 C -0.494 4.494 17 H 0.077 0.923 18 C 0.034 3.966 19 N -0.825 5.825 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.250 4.250 25 C 0.080 3.920 26 C 0.070 3.930 27 H 0.028 0.972 28 C -0.140 4.140 29 N -0.535 5.535 30 C 0.016 3.984 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.422 0.578 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.289 0.711 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -1.171 11.190 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.048 0.952 4 C -0.007 4.007 5 N -0.311 5.311 6 C 0.297 3.703 7 O -0.419 6.419 8 C 0.284 3.716 9 O -0.385 6.385 10 N -0.273 5.273 11 C 0.058 3.942 12 C -0.248 4.248 13 C -0.115 4.115 14 C -0.206 4.206 15 C 0.090 3.910 16 C -0.524 4.524 17 H 0.095 0.905 18 C -0.180 4.180 19 N -0.451 5.451 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.272 4.272 25 C -0.042 4.042 26 C -0.040 4.040 27 H 0.046 0.954 28 C -0.198 4.198 29 N -0.261 5.261 30 C -0.131 4.131 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.259 0.741 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -20.542 -1.975 11.195 23.477 hybrid contribution 0.919 1.532 -0.674 1.910 sum -19.622 -0.443 10.521 22.269 Atomic orbital electron populations 1.21832 0.90943 1.03645 1.03218 1.21996 0.97662 0.94622 0.89673 0.95198 1.22110 0.76905 1.02734 0.98935 1.48126 1.07607 1.59364 1.15972 1.19814 0.86866 0.79958 0.83647 1.90731 1.75800 1.41389 1.34005 1.20384 0.87903 0.80987 0.82354 1.90501 1.76390 1.37532 1.34037 1.43117 1.04949 1.53853 1.25404 1.17463 0.80581 0.94688 1.01447 1.20617 0.95002 0.97441 1.11772 1.20861 0.92985 0.98390 0.99302 1.21457 0.99316 0.95986 1.03832 1.17742 0.91294 0.93252 0.88756 1.19796 0.97161 0.95188 1.40217 0.90479 1.26751 1.00886 0.98626 0.91776 1.69855 1.21826 1.20540 1.32830 0.85165 0.77019 0.78299 0.78989 1.18709 1.19267 1.18294 1.20876 0.93169 0.99131 1.14010 1.23168 1.02307 0.98139 0.80556 1.22083 0.87955 0.97613 0.96305 0.95427 1.21830 1.01488 1.01751 0.94736 1.62104 1.05575 1.55500 1.02949 1.22604 1.01173 0.97230 0.92137 0.90757 0.90853 0.91007 0.88849 0.88753 0.74057 0.86544 0.86626 0.87219 0.90049 0.87589 0.89653 0.85563 0.90847 0.91848 0.90654 0.89390 0.89759 0.96147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.72 71.98 0.63 -0.88 16 2 C 0.07 1.17 2.60 45.00 0.12 1.29 16 3 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 4 C 0.11 2.28 5.90 86.35 0.51 2.79 16 5 N -0.58 -14.72 3.00 -818.71 -2.46 -17.18 16 6 C 0.51 15.91 7.75 87.24 0.68 16.59 16 7 O -0.54 -18.12 15.95 -3.27 -0.05 -18.17 16 8 C 0.50 17.56 7.59 87.24 0.66 18.23 16 9 O -0.51 -18.88 10.59 -3.32 -0.04 -18.92 16 10 N -0.63 -23.49 5.32 -304.98 -1.62 -25.11 16 11 C 0.15 6.76 6.28 38.16 0.24 7.00 16 12 C -0.23 -10.42 8.70 22.59 0.20 -10.23 16 13 C -0.10 -4.58 10.02 22.20 0.22 -4.35 16 14 C -0.19 -9.81 8.69 22.76 0.20 -9.61 16 15 C 0.09 4.98 5.58 -21.31 -0.12 4.86 16 16 C -0.49 -26.33 9.06 23.46 0.21 -26.12 16 17 H 0.08 3.96 7.89 -2.91 -0.02 3.93 16 18 C 0.03 1.71 5.20 85.25 0.44 2.16 16 19 N -0.82 -42.56 10.81 21.82 0.24 -42.33 16 20 Si 0.98 37.77 29.58 68.60 2.03 39.80 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 24 C -0.25 -12.23 9.71 22.86 0.22 -12.00 16 25 C 0.08 1.88 5.46 86.50 0.47 2.35 16 26 C 0.07 1.36 2.62 45.15 0.12 1.48 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 C -0.14 -2.17 8.73 71.98 0.63 -1.55 16 29 N -0.54 -8.86 4.57 -869.94 -3.98 -12.84 16 30 C 0.02 0.19 8.56 127.69 1.09 1.29 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.66 6.33 -2.39 -0.02 0.65 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.09 1.96 7.04 -2.39 -0.02 1.95 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.42 14.18 8.30 -92.71 -0.77 13.41 16 37 H 0.12 5.10 6.23 -2.91 -0.02 5.08 16 38 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.11 5.99 6.08 -2.91 -0.02 5.98 16 40 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 41 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.13 3.61 4.35 -46.71 -0.20 3.41 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.07 0.95 6.23 -2.39 -0.01 0.93 16 47 H 0.09 0.82 6.21 -2.38 -0.01 0.81 16 48 H 0.08 0.89 5.95 -2.38 -0.01 0.87 16 49 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -61.49 384.60 0.66 -60.83 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: 0.02 Total: 40.63 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.52 Total: -6.71 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -7.82 Total: -97.45 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.09 Total: -37.09 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -61.49 0.66 -60.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453774489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.995 kcal (2) G-P(sol) polarization free energy of solvation -61.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds