Wall clock time and date at job start Wed Apr 1 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47053 * 2 1 4 4 N 1.46497 * 109.47580 * 120.00406 * 2 1 3 5 5 C 1.34780 * 119.99850 * 274.72619 * 4 2 1 6 6 O 1.21585 * 119.99804 * 0.27145 * 5 4 2 7 7 N 1.34777 * 119.99790 * 180.27710 * 5 4 2 8 8 C 1.46495 * 119.99840 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47212 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47499 * 300.00176 * 9 8 7 11 11 C 1.53008 * 109.47023 * 60.00280 * 9 8 7 12 12 C 1.50705 * 109.47199 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00192 * 357.01304 * 12 9 8 14 14 C 1.37874 * 119.99783 * 177.00532 * 12 9 8 15 15 N 1.31515 * 120.00277 * 5.54977 * 14 12 9 16 16 Si 1.86804 * 119.99908 * 185.54564 * 14 12 9 17 17 H 1.48495 * 109.47191 * 85.00254 * 16 14 12 18 18 H 1.48498 * 109.47259 * 205.00534 * 16 14 12 19 19 H 1.48500 * 109.46889 * 325.00165 * 16 14 12 20 20 C 1.50704 * 109.47099 * 240.00601 * 2 1 3 21 21 C 1.38306 * 120.08329 * 279.72585 * 20 2 1 22 22 C 1.37950 * 120.37130 * 179.73624 * 21 20 2 23 23 C 1.39364 * 120.13217 * 0.51587 * 22 21 20 24 24 C 1.38902 * 118.94181 * 359.76052 * 23 22 21 25 25 C 1.37677 * 120.81534 * 359.97438 * 24 23 22 26 26 C 1.51143 * 106.34077 * 180.02562 * 24 23 22 27 27 C 1.51394 * 104.06584 * 359.97438 * 26 24 23 28 28 O 1.21291 * 126.44197 * 179.97438 * 27 26 24 29 29 N 1.34373 * 107.11472 * 0.02562 * 27 26 24 30 30 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46905 * 299.99229 * 1 2 3 32 32 H 1.09001 * 109.47322 * 59.99780 * 1 2 3 33 33 H 0.97003 * 120.00015 * 94.99742 * 4 2 1 34 34 H 0.97003 * 120.00130 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47007 * 299.99821 * 8 7 5 36 36 H 1.09004 * 109.47658 * 59.99554 * 8 7 5 37 37 H 1.08998 * 109.46955 * 53.92470 * 10 9 8 38 38 H 1.08998 * 109.47539 * 173.93384 * 10 9 8 39 39 H 1.09006 * 109.46898 * 293.93165 * 10 9 8 40 40 H 1.08996 * 109.47124 * 59.99574 * 11 9 8 41 41 H 1.09001 * 109.47022 * 179.97438 * 11 9 8 42 42 H 1.08997 * 109.46592 * 300.00072 * 11 9 8 43 43 H 0.97003 * 119.99702 * 180.02562 * 15 14 12 44 44 H 1.07998 * 119.81409 * 359.97438 * 21 20 2 45 45 H 1.07996 * 119.92990 * 180.27600 * 22 21 20 46 46 H 1.07994 * 120.04821 * 179.97438 * 25 24 23 47 47 H 1.08993 * 110.51550 * 118.64469 * 26 24 23 48 48 H 1.09001 * 110.50547 * 241.35719 * 26 24 23 49 49 H 0.97001 * 123.87609 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1524 -0.0170 2.3557 6 8 1.8632 1.1627 2.4103 7 7 2.6071 -0.6511 3.4547 8 6 2.7533 0.0813 4.7150 9 6 3.2823 -0.8638 5.7956 10 6 2.2986 -2.0196 5.9886 11 6 4.6426 -1.4180 5.3670 12 6 3.4333 -0.1103 7.0920 13 1 3.2236 0.9486 7.1287 14 6 3.8390 -0.7726 8.2311 15 7 4.1990 -2.0358 8.1644 16 14 3.8773 0.1241 9.8693 17 1 2.5302 0.0750 10.4922 18 1 4.8625 -0.5290 10.7683 19 1 4.2700 1.5394 9.6498 20 6 2.0323 -0.7103 -1.2306 21 6 2.0728 -2.0923 -1.2653 22 6 2.5264 -2.7487 -2.3907 23 6 2.9580 -2.0215 -3.4985 24 6 2.9177 -0.6340 -3.4490 25 6 2.4594 0.0187 -2.3267 26 6 3.4412 -0.1456 -4.7801 27 6 3.7628 -1.4163 -5.5376 28 8 4.2119 -1.4909 -6.6619 29 7 3.4560 -2.4461 -4.7308 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1524 34 1 2.8375 -1.5923 3.4111 35 1 3.4539 0.9050 4.5774 36 1 1.7842 0.4758 5.0206 37 1 2.1070 -2.4978 5.0280 38 1 2.7246 -2.7480 6.6785 39 1 1.3633 -1.6364 6.3967 40 1 5.3434 -0.5945 5.2296 41 1 5.0198 -2.0909 6.1371 42 1 4.5338 -1.9628 4.4293 43 1 4.4840 -2.5019 8.9659 44 1 1.7438 -2.6609 -0.4081 45 1 2.5508 -3.8282 -2.4118 46 1 2.4338 1.0980 -2.3015 47 1 2.6769 0.4285 -5.3037 48 1 4.3412 0.4532 -4.6400 49 1 3.5685 -3.3777 -4.9765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457853549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:00 Heat of formation + Delta-G solvation = -37.945545 kcal Electronic energy + Delta-G solvation = -29464.883237 eV Core-core repulsion = 25391.702494 eV Total energy + Delta-G solvation = -4073.180744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87310 -39.95126 -38.90735 -37.07793 -36.25085 -34.53701 -33.28677 -32.76048 -31.43123 -30.35963 -29.02119 -28.24775 -25.72762 -25.60374 -24.92082 -23.77452 -22.78408 -21.63704 -21.19506 -20.18883 -18.77048 -18.38743 -18.33008 -17.12948 -16.46884 -16.23674 -15.88594 -15.54939 -15.06849 -14.88189 -14.71335 -14.53998 -14.29687 -13.86119 -13.80735 -13.61734 -13.42453 -13.31222 -13.06629 -12.90387 -12.85638 -12.47471 -12.18055 -11.99860 -11.58550 -11.42091 -11.19000 -11.12194 -11.05748 -10.85784 -10.69163 -10.65504 -10.37738 -10.21826 -9.79328 -9.61991 -9.32507 -9.31240 -9.05160 -8.79387 -8.41552 -8.39431 -8.19954 -6.02531 -4.11008 0.67038 0.87575 1.99118 2.53193 3.01279 3.29112 3.32528 3.35605 3.39693 3.61341 3.65784 3.93917 4.32943 4.38969 4.42062 4.64832 4.76609 4.81739 4.89915 4.94156 5.15332 5.21872 5.24759 5.31740 5.48170 5.54126 5.65147 5.77372 5.83540 6.07063 6.11195 6.18516 6.22927 6.29236 6.37054 6.51033 6.53386 6.65487 6.80436 6.82138 6.90358 7.03323 7.09527 7.29434 7.40891 7.48153 7.56138 7.70749 7.99950 8.12152 8.37919 8.47336 8.88495 9.03570 9.54313 10.99490 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.001851 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.868915 B =15126.261218 C =15544.842322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.206 3.794 3 H 0.097 0.903 4 N -0.749 5.749 5 C 0.699 3.301 6 O -0.598 6.598 7 N -0.733 5.733 8 C 0.151 3.849 9 C 0.055 3.945 10 C -0.127 4.127 11 C -0.129 4.129 12 C -0.506 4.506 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.103 4.103 21 C -0.077 4.077 22 C -0.131 4.131 23 C 0.136 3.864 24 C -0.139 4.139 25 C -0.053 4.053 26 C -0.115 4.115 27 C 0.529 3.471 28 O -0.507 6.507 29 N -0.660 5.660 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.006 0.994 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -2.885 -23.305 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.101 3.899 3 H 0.115 0.885 4 N -0.407 5.407 5 C 0.399 3.601 6 O -0.477 6.477 7 N -0.387 5.387 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.185 4.185 11 C -0.187 4.187 12 C -0.544 4.544 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.104 4.104 21 C -0.096 4.096 22 C -0.152 4.152 23 C 0.039 3.961 24 C -0.142 4.142 25 C -0.072 4.072 26 C -0.154 4.154 27 C 0.317 3.683 28 O -0.381 6.381 29 N -0.303 5.303 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.560 -1.842 -23.761 24.265 hybrid contribution 0.298 -1.090 0.819 1.395 sum -4.262 -2.932 -22.942 23.518 Atomic orbital electron populations 1.22199 0.94462 1.02277 1.02758 1.19467 0.93795 0.96451 0.80201 0.88506 1.45284 1.72941 1.13399 1.09030 1.16045 0.78565 0.85153 0.80312 1.90881 1.57735 1.14468 1.84637 1.45519 1.69251 1.14007 1.09931 1.21566 1.00028 0.94909 0.80718 1.18371 0.92117 0.92150 0.91906 1.21790 0.98517 1.00197 0.98019 1.21837 0.98679 1.00066 0.98103 1.20964 1.45598 0.95166 0.92705 0.92407 1.24878 0.94763 0.94981 0.98880 1.69828 1.44471 1.09661 1.28435 0.86599 0.77755 0.79919 0.83661 1.20648 1.21379 1.19965 1.19914 1.01049 0.93745 0.95738 1.20698 0.97855 0.93796 0.97246 1.20340 1.03331 0.99840 0.91658 1.18141 0.97700 0.93647 0.86576 1.19724 1.05322 0.92783 0.96350 1.20105 0.96250 1.00231 0.90627 1.21064 1.04319 0.97181 0.92828 1.20643 0.76160 0.86613 0.84913 1.90832 1.44075 1.86203 1.17030 1.43751 1.61789 1.10629 1.14118 0.92466 0.91268 0.91757 0.77386 0.77236 0.92967 0.92923 0.97512 0.90104 0.95207 0.95476 0.89671 0.97635 0.93048 0.85026 0.85348 0.84826 0.85775 0.85740 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.47 37.16 0.35 -1.15 16 2 C 0.21 2.09 2.78 -69.08 -0.19 1.89 16 3 H 0.10 1.13 7.44 -51.92 -0.39 0.75 16 4 N -0.75 -8.81 5.03 -59.81 -0.30 -9.12 16 5 C 0.70 11.65 8.53 -86.92 -0.74 10.91 16 6 O -0.60 -12.25 16.00 5.29 0.08 -12.16 16 7 N -0.73 -12.57 4.91 -65.23 -0.32 -12.89 16 8 C 0.15 3.15 4.50 -4.05 -0.02 3.13 16 9 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 10 C -0.13 -2.80 8.03 37.16 0.30 -2.50 16 11 C -0.13 -2.85 8.11 37.16 0.30 -2.55 16 12 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 13 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 14 C 0.07 1.73 5.13 -17.82 -0.09 1.64 16 15 N -0.89 -23.32 9.45 55.43 0.52 -22.80 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 C -0.10 -0.82 4.96 -104.54 -0.52 -1.34 16 21 C -0.08 -0.53 9.04 -39.66 -0.36 -0.89 16 22 C -0.13 -0.84 10.07 -39.27 -0.40 -1.23 16 23 C 0.14 0.97 7.11 -83.69 -0.60 0.38 16 24 C -0.14 -0.98 6.35 -104.36 -0.66 -1.65 16 25 C -0.05 -0.39 9.66 -39.73 -0.38 -0.77 16 26 C -0.11 -0.70 6.88 -28.48 -0.20 -0.89 16 27 C 0.53 4.51 8.71 -10.83 -0.09 4.42 16 28 O -0.51 -6.13 18.03 5.55 0.10 -6.03 16 29 N -0.66 -4.50 5.88 -9.70 -0.06 -4.56 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.39 3.65 6.87 -40.82 -0.28 3.36 16 34 H 0.39 6.00 6.17 -40.82 -0.25 5.75 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.01 0.11 6.71 -51.93 -0.35 -0.24 16 38 H 0.08 1.96 6.25 -51.93 -0.32 1.63 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 2.09 6.10 -51.93 -0.32 1.77 16 42 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 43 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 44 H 0.13 0.74 6.89 -52.49 -0.36 0.38 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.78 8.04 -52.49 -0.42 0.36 16 47 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.41 2.05 8.96 -40.82 -0.37 1.68 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -31.71 395.72 -9.86 -41.57 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.18 Total: 7.26 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.65 Total: -2.78 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.15 Total: -49.36 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.71 -9.86 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457853549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.628 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds