Wall clock time and date at job start Wed Apr 1 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47053 * 2 1 4 4 N 1.46497 * 109.47580 * 120.00406 * 2 1 3 5 5 C 1.34780 * 119.99850 * 274.72619 * 4 2 1 6 6 O 1.21585 * 119.99804 * 0.27145 * 5 4 2 7 7 N 1.34777 * 119.99790 * 180.27710 * 5 4 2 8 8 C 1.46495 * 119.99840 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47212 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47499 * 300.00176 * 9 8 7 11 11 C 1.53008 * 109.47023 * 60.00280 * 9 8 7 12 12 C 1.50705 * 109.47199 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00192 * 357.01304 * 12 9 8 14 14 C 1.37874 * 119.99783 * 177.00532 * 12 9 8 15 15 N 1.31515 * 120.00277 * 5.54977 * 14 12 9 16 16 Si 1.86804 * 119.99908 * 185.54564 * 14 12 9 17 17 H 1.48495 * 109.47191 * 85.00254 * 16 14 12 18 18 H 1.48498 * 109.47259 * 205.00534 * 16 14 12 19 19 H 1.48500 * 109.46889 * 325.00165 * 16 14 12 20 20 C 1.50704 * 109.47099 * 240.00601 * 2 1 3 21 21 C 1.38306 * 120.08329 * 279.72585 * 20 2 1 22 22 C 1.37950 * 120.37130 * 179.73624 * 21 20 2 23 23 C 1.39364 * 120.13217 * 0.51587 * 22 21 20 24 24 C 1.38902 * 118.94181 * 359.76052 * 23 22 21 25 25 C 1.37677 * 120.81534 * 359.97438 * 24 23 22 26 26 C 1.51143 * 106.34077 * 180.02562 * 24 23 22 27 27 C 1.51394 * 104.06584 * 359.97438 * 26 24 23 28 28 O 1.21291 * 126.44197 * 179.97438 * 27 26 24 29 29 N 1.34373 * 107.11472 * 0.02562 * 27 26 24 30 30 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46905 * 299.99229 * 1 2 3 32 32 H 1.09001 * 109.47322 * 59.99780 * 1 2 3 33 33 H 0.97003 * 120.00015 * 94.99742 * 4 2 1 34 34 H 0.97003 * 120.00130 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47007 * 299.99821 * 8 7 5 36 36 H 1.09004 * 109.47658 * 59.99554 * 8 7 5 37 37 H 1.08998 * 109.46955 * 53.92470 * 10 9 8 38 38 H 1.08998 * 109.47539 * 173.93384 * 10 9 8 39 39 H 1.09006 * 109.46898 * 293.93165 * 10 9 8 40 40 H 1.08996 * 109.47124 * 59.99574 * 11 9 8 41 41 H 1.09001 * 109.47022 * 179.97438 * 11 9 8 42 42 H 1.08997 * 109.46592 * 300.00072 * 11 9 8 43 43 H 0.97003 * 119.99702 * 180.02562 * 15 14 12 44 44 H 1.07998 * 119.81409 * 359.97438 * 21 20 2 45 45 H 1.07996 * 119.92990 * 180.27600 * 22 21 20 46 46 H 1.07994 * 120.04821 * 179.97438 * 25 24 23 47 47 H 1.08993 * 110.51550 * 118.64469 * 26 24 23 48 48 H 1.09001 * 110.50547 * 241.35719 * 26 24 23 49 49 H 0.97001 * 123.87609 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1524 -0.0170 2.3557 6 8 1.8632 1.1627 2.4103 7 7 2.6071 -0.6511 3.4547 8 6 2.7533 0.0813 4.7150 9 6 3.2823 -0.8638 5.7956 10 6 2.2986 -2.0196 5.9886 11 6 4.6426 -1.4180 5.3670 12 6 3.4333 -0.1103 7.0920 13 1 3.2236 0.9486 7.1287 14 6 3.8390 -0.7726 8.2311 15 7 4.1990 -2.0358 8.1644 16 14 3.8773 0.1241 9.8693 17 1 2.5302 0.0750 10.4922 18 1 4.8625 -0.5290 10.7683 19 1 4.2700 1.5394 9.6498 20 6 2.0323 -0.7103 -1.2306 21 6 2.0728 -2.0923 -1.2653 22 6 2.5264 -2.7487 -2.3907 23 6 2.9580 -2.0215 -3.4985 24 6 2.9177 -0.6340 -3.4490 25 6 2.4594 0.0187 -2.3267 26 6 3.4412 -0.1456 -4.7801 27 6 3.7628 -1.4163 -5.5376 28 8 4.2119 -1.4909 -6.6619 29 7 3.4560 -2.4461 -4.7308 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1524 34 1 2.8375 -1.5923 3.4111 35 1 3.4539 0.9050 4.5774 36 1 1.7842 0.4758 5.0206 37 1 2.1070 -2.4978 5.0280 38 1 2.7246 -2.7480 6.6785 39 1 1.3633 -1.6364 6.3967 40 1 5.3434 -0.5945 5.2296 41 1 5.0198 -2.0909 6.1371 42 1 4.5338 -1.9628 4.4293 43 1 4.4840 -2.5019 8.9659 44 1 1.7438 -2.6609 -0.4081 45 1 2.5508 -3.8282 -2.4118 46 1 2.4338 1.0980 -2.3015 47 1 2.6769 0.4285 -5.3037 48 1 4.3412 0.4532 -4.6400 49 1 3.5685 -3.3777 -4.9765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457853549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:59 Heat of formation + Delta-G solvation = -58.279127 kcal Electronic energy + Delta-G solvation = -29465.764968 eV Core-core repulsion = 25391.702494 eV Total energy + Delta-G solvation = -4074.062474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.44750 -41.13516 -39.72560 -38.34069 -37.46361 -35.45710 -34.94188 -33.27675 -32.92482 -31.57247 -29.68532 -28.82705 -27.52048 -27.40185 -26.59925 -24.61896 -23.33361 -22.32570 -22.16060 -21.16036 -20.51556 -19.62132 -18.94198 -17.82799 -17.74970 -17.21979 -17.05148 -16.64433 -16.39764 -16.29676 -15.75516 -15.37544 -15.16736 -14.95654 -14.77156 -14.70753 -14.45150 -14.36429 -13.99987 -13.95113 -13.91069 -13.51754 -13.37729 -13.17645 -13.03217 -12.76886 -12.65216 -12.57393 -12.21723 -12.18687 -12.11964 -11.75930 -11.71496 -11.43510 -11.34949 -11.29600 -11.08580 -10.67172 -10.36901 -10.24756 -9.82356 -9.62386 -8.98196 -8.00226 -6.13902 0.08887 0.36816 1.36622 1.44553 1.47299 1.54512 1.87796 1.99865 2.29052 2.48512 2.75725 3.07336 3.23828 3.39888 3.51021 3.71171 3.89651 4.18817 4.24942 4.36306 4.45792 4.48585 4.49550 4.55247 4.59399 4.75619 4.78617 4.84791 4.95807 5.02382 5.06544 5.10446 5.12877 5.15379 5.24697 5.25718 5.36255 5.42975 5.46560 5.56766 5.68816 5.70930 5.72355 5.74389 5.76505 5.98779 6.14816 6.18700 6.26021 6.47045 6.90153 6.90279 7.23308 7.53150 7.72052 8.99119 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.001851 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.868915 B =15126.261218 C =15544.842322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.207 3.793 3 H 0.079 0.921 4 N -0.729 5.729 5 C 0.699 3.301 6 O -0.639 6.639 7 N -0.727 5.727 8 C 0.169 3.831 9 C 0.051 3.949 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.527 4.527 13 H 0.044 0.956 14 C 0.028 3.972 15 N -0.898 5.898 16 Si 0.943 3.057 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.109 4.109 21 C -0.079 4.079 22 C -0.126 4.126 23 C 0.127 3.873 24 C -0.142 4.142 25 C -0.057 4.057 26 C -0.110 4.110 27 C 0.524 3.476 28 O -0.550 6.550 29 N -0.652 5.652 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.405 0.595 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.259 0.741 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -3.973 -24.445 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.103 3.897 3 H 0.097 0.903 4 N -0.386 5.386 5 C 0.399 3.601 6 O -0.521 6.521 7 N -0.382 5.382 8 C 0.044 3.956 9 C 0.050 3.950 10 C -0.174 4.174 11 C -0.176 4.176 12 C -0.566 4.566 13 H 0.062 0.938 14 C -0.172 4.172 15 N -0.537 5.537 16 Si 0.770 3.230 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.147 4.147 23 C 0.030 3.970 24 C -0.145 4.145 25 C -0.075 4.075 26 C -0.149 4.149 27 C 0.313 3.687 28 O -0.428 6.428 29 N -0.295 5.295 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.242 0.758 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.950 -2.991 -24.917 25.580 hybrid contribution 0.397 -0.767 1.125 1.418 sum -4.553 -3.758 -23.792 24.513 Atomic orbital electron populations 1.22142 0.93840 1.02959 1.02206 1.19503 0.94245 0.95738 0.80254 0.90336 1.45131 1.71575 1.14003 1.07911 1.16154 0.78153 0.84705 0.81116 1.90860 1.59331 1.16480 1.85385 1.45204 1.69694 1.14293 1.09057 1.21070 0.98391 0.94221 0.81874 1.18372 0.92864 0.92470 0.91311 1.21625 0.97354 0.99292 0.99165 1.21669 0.97755 0.99370 0.98843 1.21257 1.45818 0.94941 0.94576 0.93766 1.25437 0.94746 0.95717 1.01266 1.69928 1.44616 1.10243 1.28871 0.85813 0.77671 0.78834 0.80711 1.20470 1.20995 1.20174 1.19711 1.02190 0.94238 0.94912 1.20871 0.97566 0.93348 0.97967 1.20562 1.02242 1.00978 0.90924 1.18329 0.97986 0.93942 0.86763 1.19813 1.05155 0.92940 0.96555 1.20206 0.96004 1.00903 0.90436 1.21105 1.05365 0.96299 0.92100 1.21001 0.75427 0.87751 0.84475 1.90809 1.46251 1.86893 1.18871 1.43714 1.60933 1.10968 1.13854 0.91118 0.94125 0.89994 0.75536 0.75845 0.94799 0.94626 0.94156 0.92275 0.96393 0.96498 0.92021 0.94389 0.93112 0.83513 0.83200 0.83809 0.83997 0.84450 0.74017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.47 71.98 0.68 -1.97 16 2 C 0.21 3.85 2.78 44.25 0.12 3.97 16 3 H 0.08 1.79 7.44 -2.38 -0.02 1.77 16 4 N -0.73 -15.67 5.03 -461.40 -2.32 -17.99 16 5 C 0.70 22.54 8.53 179.05 1.53 24.07 16 6 O -0.64 -26.23 16.00 -3.98 -0.06 -26.29 16 7 N -0.73 -23.92 4.91 -478.54 -2.35 -26.27 16 8 C 0.17 7.06 4.50 86.38 0.39 7.45 16 9 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 10 C -0.12 -5.01 8.03 71.98 0.58 -4.43 16 11 C -0.12 -5.13 8.11 71.98 0.58 -4.55 16 12 C -0.53 -27.56 8.01 25.60 0.20 -27.35 16 13 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 14 C 0.03 1.47 5.13 84.65 0.43 1.91 16 15 N -0.90 -47.28 9.45 21.45 0.20 -47.08 16 16 Si 0.94 42.31 29.54 68.60 2.03 44.33 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 C -0.11 -1.47 4.96 -19.81 -0.10 -1.57 16 21 C -0.08 -0.84 9.04 22.22 0.20 -0.63 16 22 C -0.13 -1.21 10.07 22.47 0.23 -0.99 16 23 C 0.13 1.49 7.11 38.35 0.27 1.76 16 24 C -0.14 -1.68 6.35 -19.70 -0.13 -1.80 16 25 C -0.06 -0.69 9.66 22.17 0.21 -0.48 16 26 C -0.11 -1.12 6.88 29.46 0.20 -0.92 16 27 C 0.52 8.33 8.71 87.94 0.77 9.10 16 28 O -0.55 -13.17 18.03 -3.06 -0.06 -13.23 16 29 N -0.65 -7.75 5.88 -303.21 -1.78 -9.53 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.41 6.30 6.87 -92.71 -0.64 5.66 16 34 H 0.40 11.26 6.17 -92.71 -0.57 10.69 16 35 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.41 6.71 -2.39 -0.02 1.39 16 38 H 0.06 2.81 6.25 -2.39 -0.01 2.80 16 39 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 2.99 6.10 -2.39 -0.01 2.97 16 42 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 43 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 44 H 0.15 1.07 6.89 -2.91 -0.02 1.05 16 45 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.14 1.40 8.04 -2.91 -0.02 1.38 16 47 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.42 3.50 8.96 -92.71 -0.83 2.67 16 Total: -1.00 -69.42 395.72 0.78 -68.64 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -1.03 Total: 21.60 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.16 Total: 5.82 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -6.25 Total: -100.88 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.12 Total: -39.52 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.42 0.78 -68.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457853549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.358 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds