Wall clock time and date at job start Wed Apr 1 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.28466 * 2 1 4 4 C 1.50687 * 109.37569 * 119.70816 * 2 1 3 5 5 O 1.21297 * 120.31293 * 265.21077 * 4 2 1 6 6 N 1.35144 * 119.37822 * 85.48756 * 4 2 1 7 7 C 1.40360 * 118.53097 * 0.23638 * 6 4 2 8 8 C 1.38020 * 120.39548 * 198.55939 * 7 6 4 9 9 C 1.39830 * 119.76923 * 179.89500 * 8 7 6 10 10 C 1.47525 * 120.08563 * 180.02562 * 9 8 7 11 11 O 1.21599 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00196 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46813 * 299.99686 * 14 13 12 16 16 C 1.53002 * 109.47528 * 59.99777 * 14 13 12 17 17 C 1.50703 * 109.47333 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99577 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99892 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00346 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 119.99619 * 179.97438 * 19 17 14 22 22 H 1.48492 * 109.47295 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46656 * 120.00824 * 21 19 17 24 24 H 1.48501 * 109.47381 * 240.00147 * 21 19 17 25 25 C 1.39773 * 119.83110 * 359.97438 * 9 8 7 26 26 C 1.37694 * 120.15162 * 0.08291 * 25 9 8 27 27 C 1.39100 * 120.17248 * 359.97383 * 26 25 9 28 28 N 1.39078 * 119.98826 * 179.84845 * 27 26 25 29 29 C 1.46902 * 111.00104 * 19.40742 * 28 27 26 30 30 H 1.09002 * 109.46791 * 300.29323 * 1 2 3 31 31 H 1.08996 * 109.47453 * 60.29101 * 1 2 3 32 32 H 1.08999 * 109.47590 * 180.29681 * 1 2 3 33 33 H 0.97002 * 120.74063 * 180.48007 * 6 4 2 34 34 H 1.07998 * 120.12300 * 359.86965 * 8 7 6 35 35 H 0.97001 * 119.99854 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.46430 * 300.00046 * 13 12 10 37 37 H 1.08996 * 109.47227 * 59.99514 * 13 12 10 38 38 H 1.09002 * 109.46873 * 60.00527 * 15 14 13 39 39 H 1.09005 * 109.46931 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.47000 * 300.00061 * 15 14 13 41 41 H 1.08997 * 109.46713 * 59.99677 * 16 14 13 42 42 H 1.08995 * 109.46990 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46691 * 300.00446 * 16 14 13 44 44 H 0.97002 * 120.00262 * 179.97438 * 20 19 17 45 45 H 1.08007 * 119.92649 * 180.02562 * 25 9 8 46 46 H 1.08002 * 119.91304 * 180.02562 * 26 25 9 47 47 H 1.08997 * 109.47102 * 177.51912 * 29 28 27 48 48 H 1.09006 * 109.46659 * 297.51989 * 29 28 27 49 49 H 1.08999 * 109.47363 * 57.51355 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3155 -0.0700 2.2282 6 7 2.1624 -2.0494 1.2228 7 6 1.8316 -2.7453 0.0496 8 6 1.5807 -4.1019 0.0896 9 6 1.2501 -4.7818 -1.0867 10 6 0.9800 -6.2317 -1.0519 11 8 1.0453 -6.8372 0.0006 12 7 0.6610 -6.8852 -2.1866 13 6 0.3922 -8.3249 -2.1520 14 6 0.0578 -8.8154 -3.5621 15 6 -1.1794 -8.0780 -4.0784 16 6 1.2410 -8.5397 -4.4921 17 6 -0.2180 -10.2965 -3.5266 18 1 -0.1609 -10.8341 -2.5916 19 6 -0.5443 -10.9650 -4.6874 20 7 -0.6143 -10.3102 -5.8258 21 14 -0.8854 -12.8011 -4.6434 22 1 -0.7415 -13.2981 -3.2516 23 1 -2.2680 -13.0592 -5.1204 24 1 0.0813 -13.5055 -5.5235 25 6 1.1750 -4.0839 -2.2954 26 6 1.4274 -2.7308 -2.3296 27 6 1.7578 -2.0515 -1.1616 28 7 2.0151 -0.6852 -1.2011 29 6 1.4546 -0.0789 -2.4161 30 1 -0.3633 0.5184 0.8874 31 1 -0.3634 0.5093 -0.8925 32 1 -0.3634 -1.0276 0.0053 33 1 2.4759 -2.5237 2.0088 34 1 1.6400 -4.6367 1.0260 35 1 0.6086 -6.4021 -3.0261 36 1 1.2738 -8.8502 -1.7845 37 1 -0.4504 -8.5214 -1.4892 38 1 -0.9794 -7.0068 -4.1043 39 1 -1.4174 -8.4271 -5.0833 40 1 -2.0223 -8.2744 -3.4159 41 1 2.1224 -9.0650 -4.1242 42 1 1.0025 -8.8887 -5.4967 43 1 1.4409 -7.4684 -4.5178 44 1 -0.8435 -10.7806 -6.6426 45 1 0.9194 -4.6075 -3.2049 46 1 1.3680 -2.1953 -3.2657 47 1 1.6316 0.9965 -2.4004 48 1 1.9341 -0.5133 -3.2933 49 1 0.3822 -0.2701 -2.4562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:30 Heat of formation + Delta-G solvation = -32.199998 kcal Electronic energy + Delta-G solvation = -30386.790906 eV Core-core repulsion = 26313.859307 eV Total energy + Delta-G solvation = -4072.931598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95657 -39.75924 -38.79028 -37.27326 -36.32972 -35.47100 -33.38033 -32.06062 -30.94853 -30.20575 -29.37908 -27.55891 -25.77141 -25.74997 -25.14970 -24.04111 -23.55096 -22.41938 -21.05347 -19.15191 -19.06886 -18.65756 -18.06446 -16.84018 -16.44563 -16.14530 -15.89370 -15.47347 -15.39754 -14.93244 -14.80911 -14.70023 -14.51038 -14.43267 -13.80273 -13.56267 -13.41651 -13.18037 -12.94011 -12.91411 -12.73851 -12.58395 -12.39271 -12.22909 -12.04911 -11.48715 -11.44126 -11.23008 -10.99580 -10.90344 -10.69139 -10.55866 -10.43769 -10.29746 -10.23682 -9.71350 -9.68064 -9.32293 -8.84461 -8.82156 -8.51818 -8.37441 -7.93167 -6.05576 -4.15446 0.57410 0.94170 1.98096 2.57178 2.87353 3.15202 3.25163 3.34012 3.38307 3.58222 3.75351 3.80303 4.17192 4.34383 4.37612 4.45358 4.68270 4.77326 4.85130 4.89751 4.93638 5.00921 5.10515 5.16700 5.21576 5.28551 5.42505 5.47665 5.52994 5.82222 6.07894 6.14448 6.19949 6.23927 6.28409 6.29176 6.46086 6.55042 6.72651 6.76894 6.81590 6.89130 6.95728 6.97621 7.31017 7.51400 7.54275 7.66330 7.96991 7.97514 8.10870 8.34552 8.60210 8.85486 9.50689 10.95936 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.002182 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.089145 B =12827.528961 C =13509.677742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.130 0.870 4 C 0.531 3.469 5 O -0.519 6.519 6 N -0.657 5.657 7 C 0.107 3.893 8 C -0.064 4.064 9 C -0.122 4.122 10 C 0.548 3.452 11 O -0.549 6.549 12 N -0.709 5.709 13 C 0.131 3.869 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.132 4.132 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.073 4.073 26 C -0.142 4.142 27 C 0.103 3.897 28 N -0.482 5.482 29 C 0.017 3.983 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.417 0.583 34 H 0.144 0.856 35 H 0.397 0.603 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.005 0.995 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.259 0.741 45 H 0.135 0.865 46 H 0.142 0.858 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 22.109 4.467 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.147 0.853 4 C 0.318 3.682 5 O -0.393 6.393 6 N -0.304 5.304 7 C 0.010 3.990 8 C -0.086 4.086 9 C -0.127 4.127 10 C 0.334 3.666 11 O -0.429 6.429 12 N -0.359 5.359 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.093 4.093 26 C -0.163 4.163 27 C 0.001 3.999 28 N -0.196 5.196 29 C -0.129 4.129 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.162 0.838 35 H 0.234 0.766 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.182 22.263 5.450 23.140 hybrid contribution -0.695 -1.155 -0.153 1.357 sum 2.487 21.108 5.297 21.904 Atomic orbital electron populations 1.22435 0.93459 1.03969 1.04413 1.22023 0.95946 0.99679 0.86585 0.85275 1.20565 0.76491 0.81804 0.89354 1.90796 1.48345 1.65247 1.34924 1.43718 1.64960 1.07193 1.14483 1.17292 1.05029 0.91928 0.84796 1.20674 0.97552 0.91049 0.99366 1.19864 1.05012 0.94212 0.93569 1.18077 0.77793 0.86216 0.84468 1.90756 1.53022 1.68736 1.30379 1.46246 1.68565 1.11569 1.09524 1.21773 0.99832 0.76735 1.00780 1.18369 0.92645 0.95453 0.88059 1.21843 0.98207 0.94818 1.04050 1.21842 0.97497 0.95528 1.04061 1.21016 1.46985 0.91999 0.94346 0.92344 1.24876 0.95013 0.98194 0.95437 1.69806 1.48711 1.35317 0.98634 0.86519 0.77807 0.85414 0.78172 1.19753 1.21068 1.21054 1.21235 0.96942 0.93764 0.97374 1.20882 1.03598 0.94766 0.97076 1.18694 0.99254 0.89256 0.92653 1.58519 1.56276 1.00927 1.03898 1.22662 0.98885 1.00511 0.90827 0.90389 0.90064 0.91382 0.74392 0.83784 0.76616 0.92469 0.92487 0.97576 0.89521 0.95359 0.95337 0.89526 0.97560 0.93045 0.84733 0.84080 0.90009 0.89477 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 8.47 37.16 0.31 -0.86 16 2 C 0.07 0.53 2.92 -69.07 -0.20 0.32 16 3 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.53 5.64 7.16 -10.83 -0.08 5.57 16 5 O -0.52 -7.02 17.96 5.54 0.10 -6.92 16 6 N -0.66 -6.53 5.49 -9.66 -0.05 -6.58 16 7 C 0.11 1.12 6.18 -83.45 -0.52 0.60 16 8 C -0.06 -0.77 9.48 -39.07 -0.37 -1.14 16 9 C -0.12 -1.59 5.88 -104.94 -0.62 -2.20 16 10 C 0.55 9.23 7.76 -12.47 -0.10 9.14 16 11 O -0.55 -11.12 16.34 5.28 0.09 -11.03 16 12 N -0.71 -12.04 4.91 -61.36 -0.30 -12.34 16 13 C 0.13 2.69 4.50 -4.05 -0.02 2.67 16 14 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 15 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 16 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 17 C -0.50 -12.89 8.01 -34.44 -0.28 -13.16 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -23.02 9.35 55.43 0.52 -22.50 16 21 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.07 -0.76 9.52 -39.21 -0.37 -1.13 16 26 C -0.14 -1.23 8.95 -39.46 -0.35 -1.58 16 27 C 0.10 0.96 5.06 -83.68 -0.42 0.54 16 28 N -0.48 -3.78 4.85 -172.81 -0.84 -4.62 16 29 C 0.02 0.08 7.67 60.07 0.46 0.54 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.36 6.46 -51.93 -0.34 0.03 16 32 H 0.07 0.53 7.29 -51.93 -0.38 0.15 16 33 H 0.42 3.61 8.90 -40.82 -0.36 3.25 16 34 H 0.14 1.71 7.65 -52.49 -0.40 1.31 16 35 H 0.40 5.96 4.18 -40.82 -0.17 5.79 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 43 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.13 1.25 6.38 -52.48 -0.34 0.91 16 46 H 0.14 0.85 5.91 -52.49 -0.31 0.54 16 47 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 48 H 0.09 0.36 6.68 -51.93 -0.35 0.01 16 49 H 0.05 0.22 6.57 -51.93 -0.34 -0.12 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -30.76 382.03 -8.69 -39.46 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.82 Total: 6.47 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.12 Total: -3.02 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.67 Total: -46.05 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.19 Total: -17.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.76 -8.69 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.257 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds