Wall clock time and date at job start Wed Apr 1 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.28466 * 2 1 4 4 C 1.50687 * 109.37569 * 119.70816 * 2 1 3 5 5 O 1.21297 * 120.31293 * 265.21077 * 4 2 1 6 6 N 1.35144 * 119.37822 * 85.48756 * 4 2 1 7 7 C 1.40360 * 118.53097 * 0.23638 * 6 4 2 8 8 C 1.38020 * 120.39548 * 198.55939 * 7 6 4 9 9 C 1.39830 * 119.76923 * 179.89500 * 8 7 6 10 10 C 1.47525 * 120.08563 * 180.02562 * 9 8 7 11 11 O 1.21599 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00196 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46813 * 299.99686 * 14 13 12 16 16 C 1.53002 * 109.47528 * 59.99777 * 14 13 12 17 17 C 1.50703 * 109.47333 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99577 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99892 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00346 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 119.99619 * 179.97438 * 19 17 14 22 22 H 1.48492 * 109.47295 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46656 * 120.00824 * 21 19 17 24 24 H 1.48501 * 109.47381 * 240.00147 * 21 19 17 25 25 C 1.39773 * 119.83110 * 359.97438 * 9 8 7 26 26 C 1.37694 * 120.15162 * 0.08291 * 25 9 8 27 27 C 1.39100 * 120.17248 * 359.97383 * 26 25 9 28 28 N 1.39078 * 119.98826 * 179.84845 * 27 26 25 29 29 C 1.46902 * 111.00104 * 19.40742 * 28 27 26 30 30 H 1.09002 * 109.46791 * 300.29323 * 1 2 3 31 31 H 1.08996 * 109.47453 * 60.29101 * 1 2 3 32 32 H 1.08999 * 109.47590 * 180.29681 * 1 2 3 33 33 H 0.97002 * 120.74063 * 180.48007 * 6 4 2 34 34 H 1.07998 * 120.12300 * 359.86965 * 8 7 6 35 35 H 0.97001 * 119.99854 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.46430 * 300.00046 * 13 12 10 37 37 H 1.08996 * 109.47227 * 59.99514 * 13 12 10 38 38 H 1.09002 * 109.46873 * 60.00527 * 15 14 13 39 39 H 1.09005 * 109.46931 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.47000 * 300.00061 * 15 14 13 41 41 H 1.08997 * 109.46713 * 59.99677 * 16 14 13 42 42 H 1.08995 * 109.46990 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46691 * 300.00446 * 16 14 13 44 44 H 0.97002 * 120.00262 * 179.97438 * 20 19 17 45 45 H 1.08007 * 119.92649 * 180.02562 * 25 9 8 46 46 H 1.08002 * 119.91304 * 180.02562 * 26 25 9 47 47 H 1.08997 * 109.47102 * 177.51912 * 29 28 27 48 48 H 1.09006 * 109.46659 * 297.51989 * 29 28 27 49 49 H 1.08999 * 109.47363 * 57.51355 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3155 -0.0700 2.2282 6 7 2.1624 -2.0494 1.2228 7 6 1.8316 -2.7453 0.0496 8 6 1.5807 -4.1019 0.0896 9 6 1.2501 -4.7818 -1.0867 10 6 0.9800 -6.2317 -1.0519 11 8 1.0453 -6.8372 0.0006 12 7 0.6610 -6.8852 -2.1866 13 6 0.3922 -8.3249 -2.1520 14 6 0.0578 -8.8154 -3.5621 15 6 -1.1794 -8.0780 -4.0784 16 6 1.2410 -8.5397 -4.4921 17 6 -0.2180 -10.2965 -3.5266 18 1 -0.1609 -10.8341 -2.5916 19 6 -0.5443 -10.9650 -4.6874 20 7 -0.6143 -10.3102 -5.8258 21 14 -0.8854 -12.8011 -4.6434 22 1 -0.7415 -13.2981 -3.2516 23 1 -2.2680 -13.0592 -5.1204 24 1 0.0813 -13.5055 -5.5235 25 6 1.1750 -4.0839 -2.2954 26 6 1.4274 -2.7308 -2.3296 27 6 1.7578 -2.0515 -1.1616 28 7 2.0151 -0.6852 -1.2011 29 6 1.4546 -0.0789 -2.4161 30 1 -0.3633 0.5184 0.8874 31 1 -0.3634 0.5093 -0.8925 32 1 -0.3634 -1.0276 0.0053 33 1 2.4759 -2.5237 2.0088 34 1 1.6400 -4.6367 1.0260 35 1 0.6086 -6.4021 -3.0261 36 1 1.2738 -8.8502 -1.7845 37 1 -0.4504 -8.5214 -1.4892 38 1 -0.9794 -7.0068 -4.1043 39 1 -1.4174 -8.4271 -5.0833 40 1 -2.0223 -8.2744 -3.4159 41 1 2.1224 -9.0650 -4.1242 42 1 1.0025 -8.8887 -5.4967 43 1 1.4409 -7.4684 -4.5178 44 1 -0.8435 -10.7806 -6.6426 45 1 0.9194 -4.6075 -3.2049 46 1 1.3680 -2.1953 -3.2657 47 1 1.6316 0.9965 -2.4004 48 1 1.9341 -0.5133 -3.2933 49 1 0.3822 -0.2701 -2.4562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:29 Heat of formation + Delta-G solvation = -53.111548 kcal Electronic energy + Delta-G solvation = -30387.697698 eV Core-core repulsion = 26313.859307 eV Total energy + Delta-G solvation = -4073.838391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.69888 -40.98074 -39.74388 -38.30037 -37.76725 -36.33153 -35.01210 -33.00128 -32.46731 -30.99275 -30.17278 -28.20601 -27.52688 -27.40186 -26.72733 -24.96339 -24.32705 -23.21828 -22.18537 -20.62627 -20.10436 -19.73917 -18.87841 -18.03158 -17.63346 -17.08565 -16.99441 -16.67408 -16.53284 -16.25753 -16.10445 -15.63322 -15.42711 -15.20031 -14.89206 -14.77870 -14.61965 -14.40530 -14.04252 -13.95299 -13.80676 -13.68180 -13.18028 -13.09193 -13.04662 -12.88783 -12.68140 -12.62706 -12.56321 -12.22875 -12.17493 -12.12291 -11.83288 -11.45934 -11.38673 -11.27254 -11.01050 -10.92857 -10.66556 -10.38136 -9.97431 -9.61964 -8.68646 -8.00949 -6.15872 -0.30052 0.13059 1.18176 1.42043 1.46828 1.55640 1.79438 1.85605 2.29624 2.47854 2.50885 2.80540 3.00871 3.22925 3.49195 3.73685 3.78422 3.92278 4.06595 4.12822 4.17695 4.40504 4.47190 4.53079 4.53448 4.55888 4.65481 4.70040 4.72004 4.77516 4.97970 5.00084 5.03699 5.08765 5.11733 5.15833 5.22868 5.26814 5.36303 5.44005 5.46561 5.59951 5.64473 5.70062 5.70790 5.82085 6.07262 6.19037 6.24231 6.46055 6.65852 6.74602 6.88205 7.27873 7.51743 8.98060 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.002182 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.089145 B =12827.528961 C =13509.677742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 H 0.146 0.854 4 C 0.525 3.475 5 O -0.556 6.556 6 N -0.657 5.657 7 C 0.097 3.903 8 C -0.069 4.069 9 C -0.146 4.146 10 C 0.549 3.451 11 O -0.592 6.592 12 N -0.702 5.702 13 C 0.147 3.853 14 C 0.052 3.948 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.527 4.527 18 H 0.043 0.957 19 C 0.030 3.970 20 N -0.897 5.897 21 Si 0.942 3.058 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.063 4.063 26 C -0.133 4.133 27 C 0.114 3.886 28 N -0.487 5.487 29 C 0.009 3.991 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.418 0.582 34 H 0.132 0.868 35 H 0.409 0.591 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.260 0.740 45 H 0.150 0.850 46 H 0.178 0.822 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 24.897 2.615 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.038 4.038 3 H 0.164 0.836 4 C 0.313 3.687 5 O -0.433 6.433 6 N -0.302 5.302 7 C 0.000 4.000 8 C -0.091 4.091 9 C -0.151 4.151 10 C 0.338 3.662 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.023 3.977 14 C 0.051 3.949 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.566 4.566 18 H 0.061 0.939 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.770 3.230 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.083 4.083 26 C -0.154 4.154 27 C 0.012 3.988 28 N -0.201 5.201 29 C -0.136 4.136 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.257 0.743 34 H 0.150 0.850 35 H 0.248 0.752 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.168 0.832 46 H 0.195 0.805 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.064 25.078 3.558 25.514 hybrid contribution -0.613 -1.911 0.448 2.057 sum 2.451 23.167 4.006 23.638 Atomic orbital electron populations 1.22425 0.92112 1.03392 1.05763 1.22086 0.96832 0.99837 0.85090 0.83605 1.21187 0.75766 0.81738 0.89997 1.90775 1.50123 1.65849 1.36505 1.43773 1.64515 1.07334 1.14611 1.17293 1.05694 0.91457 0.85517 1.20571 0.97974 0.91744 0.98793 1.19521 1.08440 0.91845 0.95266 1.18640 0.76357 0.87766 0.83438 1.90728 1.54841 1.70098 1.31843 1.46002 1.68848 1.10049 1.10403 1.21315 0.98303 0.78826 0.99235 1.18360 0.93404 0.94037 0.89105 1.21688 0.97333 0.96806 1.02165 1.21691 0.96559 0.97560 1.02209 1.21296 1.47396 0.94034 0.93850 0.93899 1.25407 0.95107 1.01158 0.95350 1.69898 1.48813 1.36165 0.98752 0.85751 0.77656 0.81913 0.77729 1.20205 1.20739 1.20768 1.21402 0.95836 0.94509 0.96593 1.21205 1.02129 0.93967 0.98104 1.18946 0.97295 0.90299 0.92294 1.58508 1.56388 1.00097 1.05123 1.22900 0.99621 1.01670 0.89380 0.90434 0.87394 0.92828 0.74279 0.84989 0.75194 0.94281 0.94214 0.94088 0.91759 0.96331 0.96384 0.91751 0.94123 0.93021 0.83218 0.80525 0.88085 0.88287 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.47 71.98 0.61 -1.14 16 2 C 0.07 0.91 2.92 44.23 0.13 1.04 16 3 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.52 10.69 7.16 87.60 0.63 11.31 16 5 O -0.56 -14.96 17.96 -3.08 -0.06 -15.02 16 6 N -0.66 -12.86 5.49 -302.64 -1.66 -14.52 16 7 C 0.10 1.94 6.18 38.10 0.24 2.17 16 8 C -0.07 -1.63 9.48 22.60 0.21 -1.42 16 9 C -0.15 -3.67 5.88 -20.07 -0.12 -3.79 16 10 C 0.55 18.57 7.76 86.69 0.67 19.24 16 11 O -0.59 -24.90 16.34 -4.03 -0.07 -24.96 16 12 N -0.70 -23.36 4.91 -466.29 -2.29 -25.65 16 13 C 0.15 6.12 4.50 86.38 0.39 6.50 16 14 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 15 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 16 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 17 C -0.53 -27.38 8.01 25.60 0.21 -27.17 16 18 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 19 C 0.03 1.53 5.15 84.65 0.44 1.97 16 20 N -0.90 -46.61 9.35 21.45 0.20 -46.41 16 21 Si 0.94 42.05 29.54 68.60 2.03 44.07 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 C -0.06 -1.13 9.52 22.51 0.21 -0.91 16 26 C -0.13 -1.76 8.95 22.35 0.20 -1.56 16 27 C 0.11 1.80 5.06 38.57 0.20 1.99 16 28 N -0.49 -5.87 4.85 -700.64 -3.40 -9.27 16 29 C 0.01 0.04 7.67 127.69 0.98 1.02 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.11 0.49 6.46 -2.39 -0.02 0.48 16 32 H 0.05 0.70 7.29 -2.39 -0.02 0.69 16 33 H 0.42 7.54 8.90 -92.71 -0.83 6.71 16 34 H 0.13 3.35 7.65 -2.91 -0.02 3.33 16 35 H 0.41 11.34 4.18 -92.71 -0.39 10.95 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 39 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 43 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 44 H 0.26 13.00 8.31 -92.71 -0.77 12.22 16 45 H 0.15 2.18 6.38 -2.91 -0.02 2.16 16 46 H 0.18 1.09 5.91 -2.91 -0.02 1.07 16 47 H 0.10 0.13 8.10 -2.39 -0.02 0.11 16 48 H 0.10 0.26 6.68 -2.38 -0.02 0.24 16 49 H 0.07 0.18 6.57 -2.39 -0.02 0.17 16 Total: -1.00 -68.78 382.03 0.68 -68.11 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.21 Total: 21.32 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.13 Total: 2.33 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -7.15 Total: -95.85 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.12 Total: -39.98 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -68.78 0.68 -68.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.997 kcal (2) G-P(sol) polarization free energy of solvation -68.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds