Wall clock time and date at job start Wed Apr 1 2020 03:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47593 * 2 1 4 4 N 1.46502 * 109.47299 * 240.00065 * 2 1 3 5 5 C 1.34773 * 120.00072 * 84.99631 * 4 2 1 6 6 O 1.21283 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.46901 * 109.47098 * 180.02562 * 7 5 4 9 9 C 1.46893 * 110.99960 * 294.29725 * 8 7 5 10 10 C 1.53239 * 109.34005 * 172.74621 * 9 8 7 11 11 N 1.47076 * 108.52045 * 53.83114 * 10 9 8 12 12 C 1.34777 * 120.88146 * 128.79207 * 11 10 9 13 13 O 1.21690 * 119.99928 * 174.80844 * 12 11 10 14 14 C 1.46378 * 119.99979 * 354.80602 * 12 11 10 15 15 H 1.07993 * 119.99818 * 352.07626 * 14 12 11 16 16 C 1.40052 * 119.99727 * 172.07437 * 14 12 11 17 17 N 1.30667 * 120.00247 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99614 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47134 * 89.99702 * 18 16 14 20 20 H 1.48501 * 109.46875 * 210.00170 * 18 16 14 21 21 H 1.48504 * 109.47055 * 329.99738 * 18 16 14 22 22 C 1.47082 * 118.24094 * 308.81794 * 11 10 9 23 23 C 1.46899 * 110.99689 * 169.99643 * 8 7 5 24 24 C 1.50697 * 109.47139 * 119.99762 * 2 1 3 25 25 C 1.38237 * 120.00368 * 259.99681 * 24 2 1 26 26 C 1.38231 * 119.99976 * 179.97438 * 25 24 2 27 27 C 1.38233 * 120.00555 * 359.97438 * 26 25 24 28 28 C 1.38242 * 119.99568 * 0.02562 * 27 26 25 29 29 C 1.38232 * 119.99956 * 0.06666 * 28 27 26 30 30 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46520 * 299.99967 * 1 2 3 32 32 H 1.08998 * 109.47131 * 59.99926 * 1 2 3 33 33 H 0.97006 * 119.99728 * 265.00463 * 4 2 1 34 34 H 1.09002 * 109.46904 * 300.00153 * 7 5 4 35 35 H 1.08997 * 109.47250 * 59.99646 * 7 5 4 36 36 H 1.09000 * 109.49714 * 292.70888 * 9 8 7 37 37 H 1.09003 * 109.49174 * 52.78791 * 9 8 7 38 38 H 1.09005 * 109.63172 * 294.12486 * 10 9 8 39 39 H 1.08999 * 109.63054 * 173.53833 * 10 9 8 40 40 H 0.97004 * 119.99898 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.62190 * 291.47560 * 22 11 10 42 42 H 1.09000 * 109.79555 * 170.98630 * 22 11 10 43 43 H 1.08999 * 109.49701 * 307.21372 * 23 8 7 44 44 H 1.09003 * 109.49248 * 67.29380 * 23 8 7 45 45 H 1.07999 * 119.99413 * 359.97438 * 25 24 2 46 46 H 1.08004 * 119.99751 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.00376 * 179.71938 * 27 26 25 48 48 H 1.07994 * 119.99590 * 179.97438 * 28 27 26 49 49 H 1.07995 * 119.99754 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5877 8 7 2.6989 0.2153 -4.7121 9 6 1.3502 0.6630 -5.0840 10 6 1.4559 1.7764 -6.1316 11 7 2.2798 1.2901 -7.2486 12 6 1.8445 1.3826 -8.5208 13 8 2.5762 1.0629 -9.4390 14 6 0.4914 1.8675 -8.7979 15 1 -0.2011 2.0294 -7.9852 16 6 0.0951 2.1216 -10.1169 17 7 0.9332 1.9263 -11.1001 18 14 -1.6314 2.7412 -10.4704 19 1 -1.6395 4.2259 -10.4446 20 1 -2.0629 2.2668 -11.8098 21 1 -2.5643 2.2231 -9.4376 22 6 3.5912 0.6996 -6.9407 23 6 3.4014 -0.3714 -5.8611 24 6 2.0323 -0.7103 1.2305 25 6 2.4588 0.0195 2.3243 26 6 2.9191 -0.6322 3.4531 27 6 2.9524 -2.0137 3.4885 28 6 2.5259 -2.7435 2.3947 29 6 2.0675 -2.0919 1.2651 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.6480 -1.1213 -3.3986 35 1 1.9761 -1.5507 -3.8325 36 1 0.7903 -0.1750 -5.4990 37 1 0.8364 1.0423 -4.2006 38 1 1.9239 2.6546 -5.6867 39 1 0.4609 2.0328 -6.4951 40 1 0.6588 2.1027 -12.0136 41 1 4.2644 1.4743 -6.5735 42 1 4.0111 0.2447 -7.8378 43 1 4.3753 -0.7422 -5.5415 44 1 2.8129 -1.1950 -6.2654 45 1 2.4324 1.0988 2.2968 46 1 3.2519 -0.0620 4.3078 47 1 3.3163 -2.5227 4.3687 48 1 2.5524 -3.8228 2.4221 49 1 1.7339 -2.6621 0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520834600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:08 Heat of formation + Delta-G solvation = -26.333606 kcal Electronic energy + Delta-G solvation = -29735.238483 eV Core-core repulsion = 25662.561271 eV Total energy + Delta-G solvation = -4072.677212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.47949 -39.47131 -38.37381 -36.44436 -35.58381 -33.35081 -32.46369 -32.09300 -31.29775 -30.56944 -29.66171 -28.30024 -26.35752 -24.77901 -23.83316 -23.10691 -22.98133 -21.28474 -20.66460 -20.33223 -18.74246 -17.85987 -16.89881 -16.62756 -16.32116 -15.71304 -15.53481 -15.47981 -15.00138 -14.58633 -14.48688 -14.40504 -14.22343 -13.95588 -13.83418 -13.80385 -13.69146 -13.32894 -13.01954 -12.75793 -12.51074 -12.44542 -12.05005 -11.83684 -11.62204 -11.48859 -11.41883 -11.18655 -11.12453 -10.95560 -10.87817 -10.66757 -10.49152 -10.18116 -9.94534 -9.67264 -9.38453 -9.34641 -9.11913 -8.83038 -8.14344 -7.54230 -7.12808 -6.16993 -4.60632 0.87670 0.96026 2.60496 2.87466 3.16034 3.22749 3.25911 3.37312 4.06668 4.15990 4.17192 4.43002 4.56069 4.58735 4.68136 4.68876 4.69105 4.93414 4.98052 5.06909 5.13287 5.16126 5.21179 5.36955 5.45248 5.53431 5.54221 5.57388 5.65081 5.74064 5.83439 5.86808 5.89654 5.99047 6.01295 6.06907 6.08461 6.19585 6.31820 6.38186 6.53620 6.54410 6.61878 6.81653 7.08104 7.31220 7.38588 7.49321 7.67634 8.17809 8.18569 8.41843 9.05573 9.49168 10.61017 10.79569 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.001953 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.027441 B =14330.476500 C =15049.749797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.184 3.816 3 H 0.097 0.903 4 N -0.733 5.733 5 C 0.516 3.484 6 O -0.512 6.512 7 C 0.036 3.964 8 N -0.519 5.519 9 C 0.038 3.962 10 C 0.131 3.869 11 N -0.645 5.645 12 C 0.561 3.439 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.770 5.770 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.127 3.873 23 C 0.046 3.954 24 C -0.089 4.089 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.115 4.115 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.268 0.732 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -9.586 29.094 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 H 0.115 0.885 4 N -0.388 5.388 5 C 0.302 3.698 6 O -0.385 6.385 7 C -0.096 4.096 8 N -0.244 5.244 9 C -0.090 4.090 10 C 0.006 3.994 11 N -0.383 5.383 12 C 0.367 3.633 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 C 0.002 3.998 23 C -0.083 4.083 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.135 4.135 29 C -0.133 4.133 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.015 -8.456 28.424 29.724 hybrid contribution -1.166 -1.003 -0.136 1.544 sum 0.849 -9.459 28.289 29.840 Atomic orbital electron populations 1.22167 0.94109 1.02395 1.02959 1.19744 0.94208 0.96817 0.81268 0.88493 1.46183 1.69033 1.14005 1.09540 1.20682 0.77352 0.87605 0.84154 1.90700 1.47934 1.15597 1.84308 1.21947 1.02236 0.94487 0.90881 1.61681 1.19521 1.37180 1.06022 1.22726 0.88190 0.98394 0.99680 1.21457 0.97205 0.94487 0.86215 1.48261 1.17288 1.65807 1.06978 1.18245 0.88064 0.77856 0.79161 1.90580 1.58521 1.54283 1.42920 1.20963 0.96809 1.47480 0.92853 0.90948 1.25722 0.98106 0.93420 0.95918 1.70010 1.34623 1.35488 0.99727 0.86402 0.82844 0.79475 0.78233 1.19687 1.20494 1.18898 1.21170 0.87731 0.94505 0.96366 1.22571 0.97819 0.96948 0.90944 1.19976 0.99401 0.93954 0.95578 1.21051 0.98426 1.00120 0.93039 1.21171 0.99496 0.94676 0.98095 1.21201 0.99894 0.94268 0.98605 1.21150 0.98895 1.00002 0.93417 1.20933 1.00179 0.93765 0.98434 0.92363 0.91532 0.91317 0.76797 0.88148 0.92236 0.95237 0.89145 0.93019 0.88791 0.92133 0.93215 0.89596 0.90788 0.94659 0.85693 0.85854 0.86042 0.85908 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.46 37.16 0.35 -0.95 16 2 C 0.18 1.58 2.78 -69.08 -0.19 1.39 16 3 H 0.10 1.00 7.44 -51.93 -0.39 0.61 16 4 N -0.73 -6.36 5.03 -54.93 -0.28 -6.64 16 5 C 0.52 6.25 7.46 -10.99 -0.08 6.17 16 6 O -0.51 -8.23 13.99 5.56 0.08 -8.15 16 7 C 0.04 0.42 5.45 -4.97 -0.03 0.39 16 8 N -0.52 -8.19 4.37 -235.76 -1.03 -9.22 16 9 C 0.04 0.67 5.26 -3.70 -0.02 0.65 16 10 C 0.13 2.69 6.52 -3.60 -0.02 2.67 16 11 N -0.64 -15.42 3.01 -174.12 -0.52 -15.94 16 12 C 0.56 16.39 7.61 -12.99 -0.10 16.29 16 13 O -0.58 -19.09 14.55 5.20 0.08 -19.02 16 14 C -0.54 -15.56 8.85 -35.63 -0.32 -15.87 16 15 H 0.07 1.90 5.73 -52.49 -0.30 1.60 16 16 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.33 11.86 55.55 0.66 -22.67 16 18 Si 0.91 20.38 29.56 -169.99 -5.02 15.35 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.13 2.60 6.58 -3.60 -0.02 2.57 16 23 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 24 C -0.09 -0.66 4.95 -104.62 -0.52 -1.18 16 25 C -0.11 -0.77 9.67 -39.58 -0.38 -1.16 16 26 C -0.12 -0.74 10.05 -39.59 -0.40 -1.13 16 27 C -0.12 -0.73 10.05 -39.58 -0.40 -1.12 16 28 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 29 C -0.11 -0.74 9.05 -39.58 -0.36 -1.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.40 2.44 6.87 -40.82 -0.28 2.16 16 34 H 0.10 0.93 7.97 -51.93 -0.41 0.52 16 35 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.54 5.76 -51.93 -0.30 1.24 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.98 5.38 -51.93 -0.28 1.70 16 40 H 0.27 7.36 8.29 -40.82 -0.34 7.03 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.90 7.11 -51.93 -0.37 1.53 16 43 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.13 0.77 8.04 -52.49 -0.42 0.34 16 46 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 48 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 49 H 0.12 0.59 6.92 -52.49 -0.36 0.23 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -37.18 395.37 -10.40 -47.58 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.31 Total: 3.14 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -3.00 Total: 9.61 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.17 Total: -54.47 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: 0.15 Total: -27.17 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.18 -10.40 -47.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520834600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.247 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds