Wall clock time and date at job start Wed Apr 1 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47593 * 2 1 4 4 N 1.46502 * 109.47299 * 240.00065 * 2 1 3 5 5 C 1.34773 * 120.00072 * 84.99631 * 4 2 1 6 6 O 1.21283 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.46901 * 109.47098 * 180.02562 * 7 5 4 9 9 C 1.46893 * 110.99960 * 294.29725 * 8 7 5 10 10 C 1.53239 * 109.34005 * 172.74621 * 9 8 7 11 11 N 1.47076 * 108.52045 * 53.83114 * 10 9 8 12 12 C 1.34777 * 120.88146 * 128.79207 * 11 10 9 13 13 O 1.21690 * 119.99928 * 174.80844 * 12 11 10 14 14 C 1.46378 * 119.99979 * 354.80602 * 12 11 10 15 15 H 1.07993 * 119.99818 * 352.07626 * 14 12 11 16 16 C 1.40052 * 119.99727 * 172.07437 * 14 12 11 17 17 N 1.30667 * 120.00247 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99614 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47134 * 89.99702 * 18 16 14 20 20 H 1.48501 * 109.46875 * 210.00170 * 18 16 14 21 21 H 1.48504 * 109.47055 * 329.99738 * 18 16 14 22 22 C 1.47082 * 118.24094 * 308.81794 * 11 10 9 23 23 C 1.46899 * 110.99689 * 169.99643 * 8 7 5 24 24 C 1.50697 * 109.47139 * 119.99762 * 2 1 3 25 25 C 1.38237 * 120.00368 * 259.99681 * 24 2 1 26 26 C 1.38231 * 119.99976 * 179.97438 * 25 24 2 27 27 C 1.38233 * 120.00555 * 359.97438 * 26 25 24 28 28 C 1.38242 * 119.99568 * 0.02562 * 27 26 25 29 29 C 1.38232 * 119.99956 * 0.06666 * 28 27 26 30 30 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46520 * 299.99967 * 1 2 3 32 32 H 1.08998 * 109.47131 * 59.99926 * 1 2 3 33 33 H 0.97006 * 119.99728 * 265.00463 * 4 2 1 34 34 H 1.09002 * 109.46904 * 300.00153 * 7 5 4 35 35 H 1.08997 * 109.47250 * 59.99646 * 7 5 4 36 36 H 1.09000 * 109.49714 * 292.70888 * 9 8 7 37 37 H 1.09003 * 109.49174 * 52.78791 * 9 8 7 38 38 H 1.09005 * 109.63172 * 294.12486 * 10 9 8 39 39 H 1.08999 * 109.63054 * 173.53833 * 10 9 8 40 40 H 0.97004 * 119.99898 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.62190 * 291.47560 * 22 11 10 42 42 H 1.09000 * 109.79555 * 170.98630 * 22 11 10 43 43 H 1.08999 * 109.49701 * 307.21372 * 23 8 7 44 44 H 1.09003 * 109.49248 * 67.29380 * 23 8 7 45 45 H 1.07999 * 119.99413 * 359.97438 * 25 24 2 46 46 H 1.08004 * 119.99751 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.00376 * 179.71938 * 27 26 25 48 48 H 1.07994 * 119.99590 * 179.97438 * 28 27 26 49 49 H 1.07995 * 119.99754 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5877 8 7 2.6989 0.2153 -4.7121 9 6 1.3502 0.6630 -5.0840 10 6 1.4559 1.7764 -6.1316 11 7 2.2798 1.2901 -7.2486 12 6 1.8445 1.3826 -8.5208 13 8 2.5762 1.0629 -9.4390 14 6 0.4914 1.8675 -8.7979 15 1 -0.2011 2.0294 -7.9852 16 6 0.0951 2.1216 -10.1169 17 7 0.9332 1.9263 -11.1001 18 14 -1.6314 2.7412 -10.4704 19 1 -1.6395 4.2259 -10.4446 20 1 -2.0629 2.2668 -11.8098 21 1 -2.5643 2.2231 -9.4376 22 6 3.5912 0.6996 -6.9407 23 6 3.4014 -0.3714 -5.8611 24 6 2.0323 -0.7103 1.2305 25 6 2.4588 0.0195 2.3243 26 6 2.9191 -0.6322 3.4531 27 6 2.9524 -2.0137 3.4885 28 6 2.5259 -2.7435 2.3947 29 6 2.0675 -2.0919 1.2651 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.6480 -1.1213 -3.3986 35 1 1.9761 -1.5507 -3.8325 36 1 0.7903 -0.1750 -5.4990 37 1 0.8364 1.0423 -4.2006 38 1 1.9239 2.6546 -5.6867 39 1 0.4609 2.0328 -6.4951 40 1 0.6588 2.1027 -12.0136 41 1 4.2644 1.4743 -6.5735 42 1 4.0111 0.2447 -7.8378 43 1 4.3753 -0.7422 -5.5415 44 1 2.8129 -1.1950 -6.2654 45 1 2.4324 1.0988 2.2968 46 1 3.2519 -0.0620 4.3078 47 1 3.3163 -2.5227 4.3687 48 1 2.5524 -3.8228 2.4221 49 1 1.7339 -2.6621 0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520834600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:07 Heat of formation + Delta-G solvation = -52.850284 kcal Electronic energy + Delta-G solvation = -29736.388333 eV Core-core repulsion = 25662.561271 eV Total energy + Delta-G solvation = -4073.827062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.32269 -40.42564 -39.75415 -38.13782 -36.46411 -35.07787 -34.60448 -32.87143 -32.12289 -31.76236 -30.36092 -29.59592 -28.29463 -26.09406 -24.60969 -24.54483 -23.62090 -22.55057 -21.78911 -21.15675 -20.52361 -18.62485 -18.46948 -17.87981 -17.60499 -16.96912 -16.53173 -16.40324 -16.07430 -15.99502 -15.82050 -15.65441 -15.52684 -15.20126 -15.14654 -14.59194 -14.39473 -14.28767 -14.23220 -14.06308 -13.57680 -13.40180 -13.25069 -13.09201 -13.06420 -12.80095 -12.70477 -12.67166 -12.52297 -12.19275 -12.03181 -11.97816 -11.95040 -11.81598 -11.74213 -10.94334 -10.77121 -10.15248 -9.81560 -9.80343 -9.66451 -9.43430 -9.02330 -8.30369 -6.84552 0.39215 0.50403 1.38719 1.40384 1.55316 1.68753 2.04901 2.23306 2.44797 2.74721 2.89237 3.05640 3.57834 3.58876 3.82878 3.96264 3.99925 4.12944 4.14101 4.21344 4.29697 4.30244 4.33270 4.35025 4.39994 4.50448 4.55932 4.62058 4.65248 4.67961 4.75420 4.82669 4.91141 4.93928 4.95860 5.06020 5.15275 5.17558 5.23288 5.37570 5.42508 5.57284 5.64406 5.70194 5.72592 5.93895 5.99705 6.10291 6.12800 6.41291 6.59929 6.87029 7.32288 7.40278 8.44877 8.66030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.001953 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.027441 B =14330.476500 C =15049.749797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.188 3.812 3 H 0.075 0.925 4 N -0.715 5.715 5 C 0.516 3.484 6 O -0.558 6.558 7 C 0.037 3.963 8 N -0.531 5.531 9 C 0.054 3.946 10 C 0.129 3.871 11 N -0.648 5.648 12 C 0.542 3.458 13 O -0.632 6.632 14 C -0.570 4.570 15 H 0.090 0.910 16 C 0.029 3.971 17 N -0.823 5.823 18 Si 0.995 3.005 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.249 1.249 22 C 0.120 3.880 23 C 0.061 3.939 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.412 0.588 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.274 0.726 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.029 0.971 45 H 0.126 0.874 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -11.189 31.701 33.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.083 3.917 3 H 0.094 0.906 4 N -0.369 5.369 5 C 0.303 3.697 6 O -0.436 6.436 7 C -0.094 4.094 8 N -0.257 5.257 9 C -0.074 4.074 10 C 0.006 3.994 11 N -0.384 5.384 12 C 0.349 3.651 13 O -0.519 6.519 14 C -0.606 4.606 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.814 3.186 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.172 1.172 22 C -0.004 4.004 23 C -0.068 4.068 24 C -0.099 4.099 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.140 4.140 29 C -0.138 4.138 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.048 0.952 45 H 0.144 0.856 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.109 -10.107 31.133 32.751 hybrid contribution -0.778 -0.528 -0.801 1.235 sum 0.332 -10.635 30.331 32.143 Atomic orbital electron populations 1.22106 0.93873 1.02867 1.02235 1.19656 0.94326 0.95970 0.81727 0.90648 1.46017 1.67654 1.14602 1.08653 1.20816 0.76829 0.87055 0.85027 1.90692 1.50257 1.17580 1.85057 1.22072 1.04741 0.93826 0.88724 1.61561 1.18263 1.39101 1.06735 1.22462 0.89480 0.96967 0.98506 1.21541 0.96062 0.95852 0.85963 1.48150 1.18720 1.65245 1.06326 1.18646 0.88478 0.77696 0.80314 1.90525 1.59794 1.56561 1.45058 1.21463 0.97259 1.47752 0.94163 0.89189 1.26981 1.03480 0.92889 0.95222 1.70177 1.37711 1.36766 1.00556 0.85060 0.75940 0.79056 0.78519 1.18551 1.19652 1.17219 1.21340 0.86114 0.95809 0.97091 1.22399 0.99905 0.94651 0.89803 1.19882 1.00490 0.94507 0.95047 1.21212 0.98959 1.00467 0.93549 1.21413 0.99325 0.95253 0.98287 1.21524 0.99331 0.94243 0.99379 1.21454 0.98285 1.01153 0.93113 1.21138 0.99981 0.93322 0.99311 0.91206 0.90813 0.93483 0.74974 0.84919 0.90027 0.95670 0.88488 0.93173 0.89778 0.91561 0.92774 0.92063 0.86784 0.95238 0.85616 0.84417 0.84181 0.83929 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.46 71.98 0.68 -1.70 16 2 C 0.19 3.03 2.78 44.24 0.12 3.15 16 3 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16 4 N -0.71 -10.88 5.03 -446.10 -2.24 -13.12 16 5 C 0.52 11.52 7.46 87.66 0.65 12.17 16 6 O -0.56 -17.64 13.99 -3.04 -0.04 -17.68 16 7 C 0.04 0.73 5.45 85.56 0.47 1.20 16 8 N -0.53 -15.74 4.37 -899.82 -3.93 -19.68 16 9 C 0.05 1.86 5.26 86.38 0.45 2.31 16 10 C 0.13 5.39 6.52 86.35 0.56 5.95 16 11 N -0.65 -31.83 3.01 -823.01 -2.48 -34.30 16 12 C 0.54 32.97 7.61 86.36 0.66 33.63 16 13 O -0.63 -43.73 14.55 -4.32 -0.06 -43.79 16 14 C -0.57 -33.35 8.85 24.83 0.22 -33.13 16 15 H 0.09 4.77 5.73 -2.91 -0.02 4.75 16 16 C 0.03 1.67 5.50 85.31 0.47 2.14 16 17 N -0.82 -51.44 11.86 21.84 0.26 -51.18 16 18 Si 1.00 41.97 29.56 68.60 2.03 43.99 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 22 C 0.12 5.00 6.58 86.35 0.57 5.57 16 23 C 0.06 1.86 5.62 86.38 0.49 2.34 16 24 C -0.10 -1.32 4.95 -19.87 -0.10 -1.42 16 25 C -0.12 -1.64 9.67 22.27 0.22 -1.43 16 26 C -0.12 -1.37 10.05 22.27 0.22 -1.14 16 27 C -0.13 -1.20 10.05 22.27 0.22 -0.98 16 28 C -0.12 -1.12 10.05 22.27 0.22 -0.90 16 29 C -0.12 -1.24 9.05 22.27 0.20 -1.04 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.41 3.75 6.87 -92.70 -0.64 3.11 16 34 H 0.13 1.83 7.97 -2.39 -0.02 1.81 16 35 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 3.24 5.76 -2.39 -0.01 3.22 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.08 3.61 5.38 -2.39 -0.01 3.60 16 40 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 41 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 2.83 7.11 -2.39 -0.02 2.81 16 43 H 0.11 2.61 7.99 -2.39 -0.02 2.59 16 44 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.13 1.53 8.04 -2.91 -0.02 1.50 16 46 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.14 0.74 8.06 -2.91 -0.02 0.71 16 48 H 0.14 0.69 8.06 -2.91 -0.02 0.67 16 49 H 0.14 0.88 6.92 -2.91 -0.02 0.86 16 Total: -1.00 -85.31 395.37 0.19 -85.12 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.33 Total: 23.91 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.33 Total: 26.73 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -8.39 Total: -118.28 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -0.11 Total: -61.48 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -85.31 0.19 -85.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520834600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -85.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds