Wall clock time and date at job start Wed Apr 1 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.46948 * 2 1 4 4 N 1.46501 * 109.46695 * 119.99879 * 2 1 3 5 5 C 1.34776 * 120.00093 * 274.99349 * 4 2 1 6 6 O 1.21286 * 119.99874 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.46900 * 110.99990 * 169.99650 * 8 7 5 10 10 C 1.53241 * 109.33977 * 187.25390 * 9 8 7 11 11 N 1.47074 * 108.51879 * 306.17136 * 10 9 8 12 12 C 1.34784 * 120.88239 * 231.18421 * 11 10 9 13 13 O 1.21691 * 119.99743 * 355.17259 * 12 11 10 14 14 C 1.46372 * 120.00278 * 175.17093 * 12 11 10 15 15 H 1.08007 * 119.99803 * 13.25059 * 14 12 11 16 16 C 1.40041 * 120.00304 * 193.24972 * 14 12 11 17 17 N 1.30671 * 120.00456 * 188.99135 * 16 14 12 18 18 Si 1.86805 * 119.99799 * 8.99083 * 16 14 12 19 19 H 1.48502 * 109.46874 * 274.69864 * 18 16 14 20 20 H 1.48498 * 109.47069 * 34.70172 * 18 16 14 21 21 H 1.48501 * 109.47075 * 154.70105 * 18 16 14 22 22 C 1.47074 * 118.24054 * 51.46051 * 11 10 9 23 23 C 1.46894 * 111.00097 * 294.30253 * 8 7 5 24 24 C 1.50695 * 109.47067 * 239.99714 * 2 1 3 25 25 C 1.38233 * 120.00259 * 279.72962 * 24 2 1 26 26 C 1.38234 * 119.99980 * 179.81512 * 25 24 2 27 27 C 1.38238 * 120.00316 * 0.38780 * 26 25 24 28 28 C 1.38241 * 119.99603 * 359.86456 * 27 26 25 29 29 C 1.38235 * 120.00098 * 359.95026 * 28 27 26 30 30 H 1.09004 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47165 * 300.00144 * 1 2 3 32 32 H 1.08999 * 109.47125 * 60.00379 * 1 2 3 33 33 H 0.97001 * 119.99801 * 95.00842 * 4 2 1 34 34 H 1.08996 * 109.47474 * 60.00338 * 7 5 4 35 35 H 1.08999 * 109.46925 * 300.00010 * 7 5 4 36 36 H 1.08998 * 109.48928 * 67.29460 * 9 8 7 37 37 H 1.08994 * 109.51779 * 307.23057 * 9 8 7 38 38 H 1.09006 * 109.62663 * 186.46318 * 10 9 8 39 39 H 1.09003 * 109.62690 * 65.88283 * 10 9 8 40 40 H 0.96994 * 120.00332 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.62963 * 68.24497 * 22 11 10 42 42 H 1.08996 * 109.63328 * 188.82837 * 22 11 10 43 43 H 1.09004 * 109.49207 * 292.70423 * 23 8 7 44 44 H 1.08997 * 109.49271 * 52.78318 * 23 8 7 45 45 H 1.08000 * 119.99980 * 359.97438 * 25 24 2 46 46 H 1.08000 * 120.00329 * 180.23146 * 26 25 24 47 47 H 1.07994 * 120.00256 * 179.83392 * 27 26 25 48 48 H 1.07999 * 119.99877 * 179.97438 * 28 27 26 49 49 H 1.08000 * 119.99914 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8584 1.1585 2.4117 7 6 2.6499 -0.7285 3.5875 8 7 2.6987 0.2153 4.7122 9 6 2.9545 -0.4861 5.9773 10 6 2.8184 0.5011 7.1414 11 7 3.6941 1.6538 6.8812 12 6 4.5677 2.0833 7.8134 13 8 4.5787 1.5727 8.9180 14 6 5.5031 3.1638 7.4972 15 1 5.3593 3.7595 6.6079 16 6 6.5845 3.4251 8.3478 17 7 7.3157 4.4927 8.1659 18 14 6.9816 2.2475 9.7424 19 1 6.1573 2.5898 10.9292 20 1 6.6825 0.8567 9.3163 21 1 8.4209 2.3598 10.0904 22 6 3.5869 2.3292 5.5792 23 6 3.6968 1.2665 4.4743 24 6 2.0324 -0.7104 -1.2304 25 6 2.0720 -2.0918 -1.2632 26 6 2.5292 -2.7435 -2.3933 27 6 2.9543 -2.0138 -3.4877 28 6 2.9195 -0.6322 -3.4529 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.6491 -1.1204 3.3980 35 1 1.9776 -1.5507 3.8325 36 1 3.9632 -0.8991 5.9666 37 1 2.2323 -1.2934 6.0986 38 1 3.1184 0.0156 8.0701 39 1 1.7842 0.8367 7.2178 40 1 8.0649 4.6735 8.7548 41 1 2.6250 2.8372 5.5082 42 1 4.3950 3.0531 5.4745 43 1 4.6952 0.8291 4.4846 44 1 3.5126 1.7304 3.5054 45 1 1.7434 -2.6619 -0.4068 46 1 2.5567 -3.8228 -2.4203 47 1 3.3140 -2.5229 -4.3695 48 1 3.2520 -0.0621 -4.3078 49 1 2.4320 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520834601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:12 Heat of formation + Delta-G solvation = -35.324991 kcal Electronic energy + Delta-G solvation = -29832.534669 eV Core-core repulsion = 25759.467561 eV Total energy + Delta-G solvation = -4073.067108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.50384 -39.51955 -38.60491 -36.82301 -35.65624 -33.60409 -32.80622 -32.14487 -31.29870 -30.71023 -29.68405 -28.45775 -26.64713 -24.88120 -23.88192 -23.13169 -23.11441 -21.31469 -20.77267 -20.35679 -18.82679 -17.87945 -16.93733 -16.73744 -16.35205 -16.00108 -15.60757 -15.50239 -15.04799 -14.84448 -14.56838 -14.48007 -14.29983 -14.18327 -13.86339 -13.80207 -13.58503 -13.48327 -13.16271 -12.75206 -12.51434 -12.35965 -12.24601 -12.04377 -11.93041 -11.76959 -11.51306 -11.47751 -11.19404 -11.00200 -10.81674 -10.67007 -10.64320 -10.33527 -9.78007 -9.39691 -9.38295 -9.34220 -9.12715 -8.99517 -8.23673 -7.85264 -7.43595 -6.58695 -4.79583 0.87692 0.96230 2.57092 2.84268 3.37243 3.47387 3.51344 3.75237 4.00153 4.16416 4.22225 4.35223 4.42726 4.56081 4.61522 4.65094 4.69188 4.92692 4.95978 5.04943 5.09519 5.14577 5.15895 5.32814 5.35889 5.44274 5.52451 5.52899 5.53857 5.64067 5.71612 5.73612 5.87912 5.89119 6.00379 6.04104 6.08703 6.09780 6.21812 6.32472 6.38952 6.49025 6.54469 6.67944 6.97799 7.11747 7.24716 7.34551 7.68187 7.93417 8.14720 8.36670 8.76603 9.18981 10.08279 10.42181 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002046 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.420704 B =13682.596629 C =14131.073094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.184 3.816 3 H 0.097 0.903 4 N -0.732 5.732 5 C 0.516 3.484 6 O -0.512 6.512 7 C 0.036 3.964 8 N -0.519 5.519 9 C 0.045 3.955 10 C 0.125 3.875 11 N -0.635 5.635 12 C 0.554 3.446 13 O -0.619 6.619 14 C -0.533 4.533 15 H 0.091 0.909 16 C 0.101 3.899 17 N -0.829 5.829 18 Si 0.968 3.032 19 H -0.278 1.278 20 H -0.266 1.266 21 H -0.323 1.323 22 C 0.129 3.871 23 C 0.039 3.961 24 C -0.089 4.089 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.116 4.116 29 C -0.108 4.108 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.281 0.719 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.032 0.968 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 -15.322 -24.338 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 H 0.115 0.885 4 N -0.387 5.387 5 C 0.302 3.698 6 O -0.385 6.385 7 C -0.095 4.095 8 N -0.245 5.245 9 C -0.083 4.083 10 C 0.001 3.999 11 N -0.369 5.369 12 C 0.364 3.636 13 O -0.511 6.511 14 C -0.569 4.569 15 H 0.109 0.891 16 C -0.117 4.117 17 N -0.458 5.458 18 Si 0.801 3.199 19 H -0.205 1.205 20 H -0.191 1.191 21 H -0.255 1.255 22 C 0.005 3.995 23 C -0.090 4.090 24 C -0.090 4.090 25 C -0.133 4.133 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.134 4.134 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.051 0.949 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.405 -14.302 -23.669 29.914 hybrid contribution 1.054 -1.362 0.197 1.733 sum -10.351 -15.664 -23.472 30.057 Atomic orbital electron populations 1.22158 0.94093 1.02348 1.02949 1.19744 0.94238 0.96807 0.81237 0.88500 1.46178 1.68998 1.14058 1.09484 1.20657 0.77522 0.87624 0.84003 1.90706 1.47865 1.15642 1.84315 1.21944 1.01151 0.95808 0.90646 1.61683 1.50375 1.11893 1.00519 1.22550 0.99616 0.96526 0.89636 1.21278 0.94340 0.87587 0.96682 1.47767 1.40980 1.32159 1.16023 1.18326 0.79863 0.83003 0.82426 1.90186 1.73046 1.64435 1.23448 1.20787 1.09834 1.15091 1.11138 0.89137 1.25766 0.93843 0.94623 0.97428 1.69564 1.15844 1.23702 1.36732 0.85214 0.72549 0.81823 0.80344 1.20460 1.19116 1.25458 1.21646 1.02253 0.94080 0.81514 1.22794 0.91857 0.93315 1.00998 1.19972 0.99485 0.93959 0.95580 1.20921 1.00258 0.93750 0.98401 1.21148 0.98909 0.99993 0.93436 1.21206 0.99842 0.94275 0.98611 1.21181 0.99414 0.94679 0.98124 1.21060 0.98360 1.00147 0.93040 0.92391 0.91295 0.91555 0.76788 0.92137 0.88088 0.94509 0.90523 0.89381 0.92698 0.90857 0.92534 0.88197 0.94934 0.88870 0.86143 0.85915 0.86026 0.85817 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.46 37.16 0.35 -0.90 16 2 C 0.18 1.56 2.78 -69.08 -0.19 1.36 16 3 H 0.10 0.99 7.44 -51.93 -0.39 0.60 16 4 N -0.73 -6.18 5.03 -54.93 -0.28 -6.46 16 5 C 0.52 6.07 7.46 -10.99 -0.08 5.99 16 6 O -0.51 -8.07 13.99 5.55 0.08 -7.99 16 7 C 0.04 0.40 5.45 -4.98 -0.03 0.37 16 8 N -0.52 -7.81 4.37 -235.47 -1.03 -8.84 16 9 C 0.05 0.68 5.62 -3.70 -0.02 0.66 16 10 C 0.13 2.38 6.58 -3.60 -0.02 2.36 16 11 N -0.63 -14.40 3.00 -173.84 -0.52 -14.92 16 12 C 0.55 15.18 7.32 -12.99 -0.10 15.09 16 13 O -0.62 -18.27 11.82 5.20 0.06 -18.21 16 14 C -0.53 -15.32 9.35 -35.64 -0.33 -15.66 16 15 H 0.09 2.59 6.02 -52.48 -0.32 2.27 16 16 C 0.10 2.94 5.52 -17.37 -0.10 2.84 16 17 N -0.83 -23.89 13.92 55.55 0.77 -23.12 16 18 Si 0.97 25.95 25.88 -169.99 -4.40 21.55 16 19 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.27 -7.43 6.62 56.52 0.37 -7.05 16 21 H -0.32 -8.18 7.11 56.52 0.40 -7.77 16 22 C 0.13 2.58 6.54 -3.37 -0.02 2.56 16 23 C 0.04 0.66 5.27 -3.47 -0.02 0.64 16 24 C -0.09 -0.67 4.96 -104.62 -0.52 -1.19 16 25 C -0.11 -0.74 9.06 -39.58 -0.36 -1.10 16 26 C -0.12 -0.71 10.05 -39.58 -0.40 -1.10 16 27 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 28 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 29 C -0.11 -0.79 9.67 -39.58 -0.38 -1.17 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.40 2.35 6.85 -40.82 -0.28 2.07 16 34 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 35 H 0.10 0.85 7.97 -51.93 -0.41 0.44 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 38 H 0.09 1.78 7.09 -51.93 -0.37 1.41 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.28 7.47 8.29 -40.82 -0.34 7.13 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 2.13 5.41 -51.93 -0.28 1.85 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.58 5.76 -51.93 -0.30 1.28 16 45 H 0.12 0.56 6.90 -52.49 -0.36 0.20 16 46 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 47 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.13 0.79 8.04 -52.49 -0.42 0.37 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -35.45 391.08 -9.79 -45.24 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.35 Total: -1.60 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -3.01 Total: 8.47 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.05 Total: -53.34 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: 0.14 Total: -26.20 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -4.40 Total: 21.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.45 -9.79 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520834601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.911 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds