Wall clock time and date at job start Wed Apr 1 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.46948 * 2 1 4 4 N 1.46501 * 109.46695 * 119.99879 * 2 1 3 5 5 C 1.34776 * 120.00093 * 274.99349 * 4 2 1 6 6 O 1.21286 * 119.99874 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.46900 * 110.99990 * 169.99650 * 8 7 5 10 10 C 1.53241 * 109.33977 * 187.25390 * 9 8 7 11 11 N 1.47074 * 108.51879 * 306.17136 * 10 9 8 12 12 C 1.34784 * 120.88239 * 231.18421 * 11 10 9 13 13 O 1.21691 * 119.99743 * 355.17259 * 12 11 10 14 14 C 1.46372 * 120.00278 * 175.17093 * 12 11 10 15 15 H 1.08007 * 119.99803 * 13.25059 * 14 12 11 16 16 C 1.40041 * 120.00304 * 193.24972 * 14 12 11 17 17 N 1.30671 * 120.00456 * 188.99135 * 16 14 12 18 18 Si 1.86805 * 119.99799 * 8.99083 * 16 14 12 19 19 H 1.48502 * 109.46874 * 274.69864 * 18 16 14 20 20 H 1.48498 * 109.47069 * 34.70172 * 18 16 14 21 21 H 1.48501 * 109.47075 * 154.70105 * 18 16 14 22 22 C 1.47074 * 118.24054 * 51.46051 * 11 10 9 23 23 C 1.46894 * 111.00097 * 294.30253 * 8 7 5 24 24 C 1.50695 * 109.47067 * 239.99714 * 2 1 3 25 25 C 1.38233 * 120.00259 * 279.72962 * 24 2 1 26 26 C 1.38234 * 119.99980 * 179.81512 * 25 24 2 27 27 C 1.38238 * 120.00316 * 0.38780 * 26 25 24 28 28 C 1.38241 * 119.99603 * 359.86456 * 27 26 25 29 29 C 1.38235 * 120.00098 * 359.95026 * 28 27 26 30 30 H 1.09004 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47165 * 300.00144 * 1 2 3 32 32 H 1.08999 * 109.47125 * 60.00379 * 1 2 3 33 33 H 0.97001 * 119.99801 * 95.00842 * 4 2 1 34 34 H 1.08996 * 109.47474 * 60.00338 * 7 5 4 35 35 H 1.08999 * 109.46925 * 300.00010 * 7 5 4 36 36 H 1.08998 * 109.48928 * 67.29460 * 9 8 7 37 37 H 1.08994 * 109.51779 * 307.23057 * 9 8 7 38 38 H 1.09006 * 109.62663 * 186.46318 * 10 9 8 39 39 H 1.09003 * 109.62690 * 65.88283 * 10 9 8 40 40 H 0.96994 * 120.00332 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.62963 * 68.24497 * 22 11 10 42 42 H 1.08996 * 109.63328 * 188.82837 * 22 11 10 43 43 H 1.09004 * 109.49207 * 292.70423 * 23 8 7 44 44 H 1.08997 * 109.49271 * 52.78318 * 23 8 7 45 45 H 1.08000 * 119.99980 * 359.97438 * 25 24 2 46 46 H 1.08000 * 120.00329 * 180.23146 * 26 25 24 47 47 H 1.07994 * 120.00256 * 179.83392 * 27 26 25 48 48 H 1.07999 * 119.99877 * 179.97438 * 28 27 26 49 49 H 1.08000 * 119.99914 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8584 1.1585 2.4117 7 6 2.6499 -0.7285 3.5875 8 7 2.6987 0.2153 4.7122 9 6 2.9545 -0.4861 5.9773 10 6 2.8184 0.5011 7.1414 11 7 3.6941 1.6538 6.8812 12 6 4.5677 2.0833 7.8134 13 8 4.5787 1.5727 8.9180 14 6 5.5031 3.1638 7.4972 15 1 5.3593 3.7595 6.6079 16 6 6.5845 3.4251 8.3478 17 7 7.3157 4.4927 8.1659 18 14 6.9816 2.2475 9.7424 19 1 6.1573 2.5898 10.9292 20 1 6.6825 0.8567 9.3163 21 1 8.4209 2.3598 10.0904 22 6 3.5869 2.3292 5.5792 23 6 3.6968 1.2665 4.4743 24 6 2.0324 -0.7104 -1.2304 25 6 2.0720 -2.0918 -1.2632 26 6 2.5292 -2.7435 -2.3933 27 6 2.9543 -2.0138 -3.4877 28 6 2.9195 -0.6322 -3.4529 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.6491 -1.1204 3.3980 35 1 1.9776 -1.5507 3.8325 36 1 3.9632 -0.8991 5.9666 37 1 2.2323 -1.2934 6.0986 38 1 3.1184 0.0156 8.0701 39 1 1.7842 0.8367 7.2178 40 1 8.0649 4.6735 8.7548 41 1 2.6250 2.8372 5.5082 42 1 4.3950 3.0531 5.4745 43 1 4.6952 0.8291 4.4846 44 1 3.5126 1.7304 3.5054 45 1 1.7434 -2.6619 -0.4068 46 1 2.5567 -3.8228 -2.4203 47 1 3.3140 -2.5229 -4.3695 48 1 3.2520 -0.0621 -4.3078 49 1 2.4320 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520834601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:11 Heat of formation + Delta-G solvation = -60.282483 kcal Electronic energy + Delta-G solvation = -29833.616907 eV Core-core repulsion = 25759.467561 eV Total energy + Delta-G solvation = -4074.149346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.34472 -40.58103 -39.88301 -38.40950 -36.48781 -35.21008 -35.01556 -32.88574 -32.18080 -31.77026 -30.39303 -29.71011 -28.54067 -26.15422 -24.63003 -24.61300 -23.63199 -22.58771 -21.80550 -21.15895 -20.57494 -18.75508 -18.54539 -18.07446 -17.64861 -17.00267 -16.88155 -16.53053 -16.09235 -16.03774 -15.92782 -15.66398 -15.50657 -15.34536 -15.17485 -14.64006 -14.54096 -14.30804 -14.24016 -14.14478 -13.97676 -13.84696 -13.33759 -13.30527 -13.08672 -13.01796 -12.77939 -12.57649 -12.50663 -12.33304 -12.18097 -12.08256 -11.93159 -11.74914 -11.43215 -11.23586 -10.79524 -10.16254 -10.00485 -9.82358 -9.66349 -9.52482 -9.16394 -8.80611 -7.02806 0.38433 0.49596 1.31182 1.35490 1.58735 1.68745 2.03737 2.07500 2.32354 2.62348 2.87902 3.00514 3.29093 3.58406 3.81627 3.95048 3.96021 4.09171 4.13229 4.17182 4.29057 4.30439 4.32733 4.34020 4.35068 4.49064 4.53342 4.61447 4.64156 4.65436 4.75526 4.78790 4.87025 4.93370 4.94415 5.05458 5.11639 5.14546 5.14678 5.23886 5.42079 5.56500 5.63639 5.66151 5.70241 5.86900 5.94257 6.02316 6.09543 6.22864 6.59346 6.61206 7.10599 7.32268 7.95266 8.25039 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002046 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.420704 B =13682.596629 C =14131.073094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.187 3.813 3 H 0.073 0.927 4 N -0.715 5.715 5 C 0.515 3.485 6 O -0.559 6.559 7 C 0.037 3.963 8 N -0.530 5.530 9 C 0.057 3.943 10 C 0.118 3.882 11 N -0.635 5.635 12 C 0.551 3.449 13 O -0.644 6.644 14 C -0.554 4.554 15 H 0.081 0.919 16 C 0.068 3.932 17 N -0.849 5.849 18 Si 1.015 2.985 19 H -0.292 1.292 20 H -0.285 1.285 21 H -0.297 1.297 22 C 0.128 3.872 23 C 0.055 3.945 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.031 0.969 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.292 0.708 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 -18.378 -25.777 33.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.083 3.917 3 H 0.091 0.909 4 N -0.369 5.369 5 C 0.302 3.698 6 O -0.437 6.437 7 C -0.093 4.093 8 N -0.255 5.255 9 C -0.071 4.071 10 C -0.005 4.005 11 N -0.368 5.368 12 C 0.358 3.642 13 O -0.539 6.539 14 C -0.590 4.590 15 H 0.099 0.901 16 C -0.148 4.148 17 N -0.480 5.480 18 Si 0.847 3.153 19 H -0.219 1.219 20 H -0.212 1.212 21 H -0.227 1.227 22 C 0.005 3.995 23 C -0.074 4.074 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.145 4.145 28 C -0.144 4.144 29 C -0.143 4.143 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.049 0.951 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.113 0.887 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.019 -17.399 -25.170 32.874 hybrid contribution 1.156 -0.426 0.516 1.336 sum -10.863 -17.825 -24.655 32.305 Atomic orbital electron populations 1.22085 0.93636 1.02966 1.02179 1.19652 0.94524 0.95841 0.81711 0.90892 1.46016 1.67665 1.14665 1.08579 1.20861 0.76964 0.87090 0.84935 1.90698 1.50228 1.17666 1.85084 1.22080 1.03085 0.95468 0.88694 1.61577 1.49289 1.12720 1.01942 1.22458 1.00716 0.95991 0.87976 1.21537 0.93807 0.87008 0.98155 1.47754 1.40234 1.32920 1.15866 1.18233 0.80516 0.82669 0.82746 1.90157 1.74130 1.65049 1.24572 1.21005 1.10749 1.16031 1.11193 0.90093 1.26293 0.94030 0.95579 0.98853 1.69564 1.16513 1.24194 1.37691 0.84549 0.73423 0.79316 0.77989 1.21903 1.21154 1.22683 1.21676 1.01450 0.94886 0.81491 1.22510 0.92202 0.93292 0.99410 1.19898 1.00495 0.94577 0.95046 1.21149 0.99938 0.93256 0.99323 1.21465 0.98238 1.01187 0.93106 1.21527 0.99346 0.94206 0.99447 1.21414 0.99352 0.95305 0.98303 1.21216 0.99018 1.00441 0.93642 0.90977 0.93417 0.90970 0.74942 0.90280 0.84393 0.95088 0.86197 0.90834 0.91698 0.89738 0.92332 0.90267 0.95658 0.88724 0.84281 0.83822 0.84213 0.84531 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.46 71.98 0.68 -1.57 16 2 C 0.19 3.01 2.78 44.25 0.12 3.13 16 3 H 0.07 1.54 7.44 -2.39 -0.02 1.52 16 4 N -0.71 -10.55 5.03 -446.10 -2.24 -12.80 16 5 C 0.51 11.15 7.46 87.66 0.65 11.80 16 6 O -0.56 -17.43 13.99 -3.05 -0.04 -17.47 16 7 C 0.04 0.69 5.45 85.56 0.47 1.15 16 8 N -0.53 -14.68 4.37 -898.90 -3.93 -18.61 16 9 C 0.06 1.55 5.62 86.38 0.49 2.04 16 10 C 0.12 4.34 6.58 86.35 0.57 4.91 16 11 N -0.63 -28.94 3.00 -822.13 -2.47 -31.41 16 12 C 0.55 30.66 7.32 86.36 0.63 31.29 16 13 O -0.64 -38.48 11.82 -4.32 -0.05 -38.53 16 14 C -0.55 -32.63 9.35 24.83 0.23 -32.39 16 15 H 0.08 4.81 6.02 -2.91 -0.02 4.79 16 16 C 0.07 3.99 5.52 85.30 0.47 4.46 16 17 N -0.85 -49.25 13.92 21.83 0.30 -48.94 16 18 Si 1.02 53.77 25.88 68.60 1.78 55.55 16 19 H -0.29 -15.98 7.11 99.48 0.71 -15.27 16 20 H -0.28 -15.88 6.62 99.48 0.66 -15.22 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C 0.13 5.21 6.54 86.50 0.57 5.78 16 23 C 0.05 1.83 5.27 86.54 0.46 2.28 16 24 C -0.10 -1.35 4.96 -19.87 -0.10 -1.45 16 25 C -0.12 -1.22 9.06 22.27 0.20 -1.01 16 26 C -0.12 -1.14 10.05 22.27 0.22 -0.91 16 27 C -0.13 -1.28 10.05 22.27 0.22 -1.05 16 28 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16 29 C -0.12 -1.74 9.67 22.27 0.22 -1.53 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.41 3.50 6.85 -92.71 -0.64 2.87 16 34 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.14 1.59 7.97 -2.39 -0.02 1.57 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 2.30 7.99 -2.39 -0.02 2.28 16 38 H 0.07 2.93 7.09 -2.38 -0.02 2.91 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.29 15.42 8.29 -92.71 -0.77 14.65 16 41 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.08 3.52 5.41 -2.39 -0.01 3.51 16 43 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.09 3.19 5.76 -2.39 -0.01 3.18 16 45 H 0.14 0.80 6.90 -2.91 -0.02 0.78 16 46 H 0.14 0.69 8.06 -2.91 -0.02 0.66 16 47 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 48 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 49 H 0.12 1.63 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -78.09 391.08 -0.05 -78.14 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.28 Total: 8.40 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 6.32 Total: 25.67 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -8.33 Total: -111.76 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.09 Total: -56.01 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.78 Total: 55.55 kcal Total: -78.09 -0.05 -78.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520834601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.857 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds