Wall clock time and date at job start Wed Apr 1 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 N 1.46501 * 109.46904 * 120.00103 * 2 1 3 5 5 C 1.46498 * 120.00097 * 81.85135 * 4 2 1 6 6 C 1.50695 * 109.47165 * 269.99349 * 5 4 2 7 7 H 1.07995 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00019 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00084 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00191 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46778 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47146 * 120.00199 * 10 8 6 13 13 H 1.48501 * 109.47125 * 240.00316 * 10 8 6 14 14 C 1.34776 * 119.99688 * 261.84535 * 4 2 1 15 15 O 1.21607 * 120.00007 * 218.52575 * 14 4 2 16 16 C 1.47524 * 120.00316 * 38.53182 * 14 4 2 17 17 C 1.39775 * 120.07959 * 344.28732 * 16 14 4 18 18 C 1.37690 * 120.15048 * 180.02562 * 17 16 14 19 19 C 1.39104 * 120.17272 * 359.97438 * 18 17 16 20 20 C 1.39781 * 119.85298 * 359.88457 * 19 18 17 21 21 C 1.38032 * 120.22226 * 0.19155 * 20 19 18 22 22 N 1.40359 * 119.38560 * 180.16068 * 20 19 18 23 23 C 1.35151 * 118.52826 * 18.58865 * 22 20 19 24 24 O 1.21288 * 120.31287 * 180.50863 * 23 22 20 25 25 C 1.50689 * 119.37515 * 0.23068 * 23 22 20 26 26 H 1.08998 * 109.37800 * 205.13992 * 25 23 22 27 27 C 1.53007 * 109.37480 * 85.49199 * 25 23 22 28 28 N 1.39085 * 119.98799 * 179.84992 * 19 18 17 29 29 C 1.46892 * 110.99994 * 19.39566 * 28 19 18 30 30 H 1.09001 * 109.47376 * 311.40851 * 1 2 3 31 31 H 1.08997 * 109.47120 * 71.41276 * 1 2 3 32 32 H 1.09006 * 109.46707 * 191.41144 * 1 2 3 33 33 H 1.09002 * 109.47035 * 240.00074 * 2 1 3 34 34 H 1.08999 * 109.46830 * 230.64764 * 3 2 1 35 35 H 1.08997 * 109.47258 * 350.64874 * 3 2 1 36 36 H 1.08998 * 109.46850 * 110.64919 * 3 2 1 37 37 H 1.08998 * 109.47007 * 30.00068 * 5 4 2 38 38 H 1.09001 * 109.46979 * 149.99224 * 5 4 2 39 39 H 0.97000 * 120.00074 * 179.97438 * 9 8 6 40 40 H 1.08003 * 119.92599 * 0.05292 * 17 16 14 41 41 H 1.07999 * 119.91270 * 180.02562 * 18 17 16 42 42 H 1.07997 * 120.11882 * 179.84403 * 21 20 19 43 43 H 0.96999 * 120.73741 * 198.34156 * 22 20 19 44 44 H 1.09000 * 109.46568 * 59.99771 * 27 25 23 45 45 H 1.08991 * 109.47296 * 179.97438 * 27 25 23 46 46 H 1.09007 * 109.47118 * 300.00347 * 27 25 23 47 47 H 1.09004 * 109.47101 * 177.98631 * 29 28 19 48 48 H 1.09001 * 109.47829 * 297.99217 * 29 28 19 49 49 H 1.09003 * 109.47083 * 57.99472 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.0929 -2.1536 1.2182 6 6 0.7925 -2.7152 1.7326 7 1 -0.0094 -2.0490 2.0144 8 6 0.6263 -4.0794 1.8423 9 7 1.6027 -4.8906 1.4986 10 14 -0.9859 -4.7756 2.4792 11 1 -1.9160 -3.6616 2.7943 12 1 -1.5926 -5.6480 1.4418 13 1 -0.7310 -5.5707 3.7073 14 6 2.3990 0.0199 2.2763 15 8 3.3657 -0.3311 2.9252 16 6 1.6429 1.2235 2.6715 17 6 0.7535 1.8186 1.7724 18 6 0.0475 2.9423 2.1395 19 6 0.2154 3.4904 3.4069 20 6 1.1017 2.8965 4.3100 21 6 1.8133 1.7709 3.9468 22 7 1.2611 3.4558 5.5875 23 6 0.3074 4.2955 6.0480 24 8 0.4169 4.8043 7.1435 25 6 -0.8900 4.5986 5.1849 26 1 -1.3020 5.5680 5.4655 27 6 -1.9531 3.5183 5.3941 28 7 -0.4974 4.6274 3.7727 29 6 -1.6671 4.8172 2.9047 30 1 -0.3634 0.6797 0.7708 31 1 -0.3633 0.3276 -0.9740 32 1 -0.3633 -1.0074 0.2033 33 1 1.8934 -0.5138 -0.8900 34 1 2.7755 1.5678 -0.7947 35 1 1.2051 2.1230 -0.1670 36 1 2.5028 1.6642 0.9616 37 1 2.2746 -2.5233 0.2091 38 1 2.9074 -2.4660 1.8717 39 1 1.4858 -5.8504 1.5762 40 1 0.6194 1.3959 0.7876 41 1 -0.6391 3.3988 1.4419 42 1 2.4995 1.3148 4.6450 43 1 2.0366 3.2415 6.1293 44 1 -2.2537 3.5025 6.4417 45 1 -2.8202 3.7362 4.7709 46 1 -1.5426 2.5465 5.1193 47 1 -2.2263 5.6927 3.2348 48 1 -1.3367 4.9636 1.8763 49 1 -2.3066 3.9361 2.9589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531402311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:38 Heat of formation + Delta-G solvation = 54.321311 kcal Electronic energy + Delta-G solvation = -32024.140314 eV Core-core repulsion = 27954.960561 eV Total energy + Delta-G solvation = -4069.179753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.92757 -41.84437 -39.66448 -38.39267 -37.80880 -36.28403 -35.07846 -33.28677 -32.64918 -30.75652 -30.31957 -29.19715 -28.02760 -27.74146 -25.63895 -24.54420 -24.34102 -23.46914 -22.65294 -21.16590 -19.70004 -19.13163 -18.63241 -18.54222 -17.74796 -17.38037 -17.19476 -16.75546 -16.54697 -16.32963 -16.19397 -15.54833 -15.33431 -15.16615 -15.11259 -14.68816 -14.63937 -14.32888 -14.00832 -13.90048 -13.66024 -13.52131 -13.31286 -13.25511 -13.09988 -13.00947 -12.82263 -12.71947 -12.61052 -12.42696 -12.36490 -12.10684 -11.86499 -11.53998 -11.47901 -11.35513 -10.91851 -10.77522 -10.64064 -10.58286 -9.52904 -9.26785 -8.54776 -8.17951 -6.33756 -0.24477 0.19609 1.18690 1.38818 1.40907 1.52192 1.71050 1.87554 2.27804 2.43630 2.52911 2.82817 3.03399 3.10807 3.53608 3.63116 3.77781 3.91131 3.95115 4.06093 4.10069 4.16612 4.26204 4.39438 4.48201 4.56789 4.57432 4.64981 4.69075 4.71874 4.78130 4.84576 4.86460 5.00241 5.05347 5.07476 5.11518 5.18318 5.23765 5.29154 5.36314 5.46949 5.48982 5.61738 5.67361 5.70273 5.86380 5.96669 6.10753 6.13086 6.74571 6.75437 6.81215 7.18590 7.39315 8.88163 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003546 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.017271 B = 7893.617890 C = 8357.906431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 C -0.189 4.189 4 N -0.624 5.624 5 C 0.266 3.734 6 C -0.534 4.534 7 H 0.067 0.933 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.288 1.288 14 C 0.571 3.429 15 O -0.587 6.587 16 C -0.159 4.159 17 C -0.127 4.127 18 C -0.149 4.149 19 C 0.117 3.883 20 C 0.085 3.915 21 C -0.078 4.078 22 N -0.657 5.657 23 C 0.524 3.476 24 O -0.559 6.559 25 C 0.072 3.928 26 H 0.149 0.851 27 C -0.179 4.179 28 N -0.485 5.485 29 C 0.007 3.993 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.020 0.980 38 H -0.009 1.009 39 H 0.265 0.735 40 H 0.239 0.761 41 H 0.184 0.816 42 H 0.119 0.881 43 H 0.415 0.585 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.047 0.953 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 22.400 -3.444 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.024 3.976 3 C -0.245 4.245 4 N -0.357 5.357 5 C 0.145 3.855 6 C -0.572 4.572 7 H 0.085 0.915 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.183 1.183 12 H -0.197 1.197 13 H -0.214 1.214 14 C 0.363 3.637 15 O -0.469 6.469 16 C -0.165 4.165 17 C -0.144 4.144 18 C -0.169 4.169 19 C 0.015 3.985 20 C -0.012 4.012 21 C -0.100 4.100 22 N -0.303 5.303 23 C 0.312 3.688 24 O -0.436 6.436 25 C -0.037 4.037 26 H 0.166 0.834 27 C -0.238 4.238 28 N -0.199 5.199 29 C -0.137 4.137 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.009 0.991 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.201 0.799 42 H 0.137 0.863 43 H 0.254 0.746 44 H 0.095 0.905 45 H 0.129 0.871 46 H 0.066 0.934 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.044 22.866 -2.624 25.529 hybrid contribution 0.385 -2.096 1.290 2.491 sum -10.659 20.770 -1.334 23.384 Atomic orbital electron populations 1.23125 0.94186 1.04523 1.04790 1.21399 0.95618 0.93534 0.87030 1.23336 1.03305 0.94500 1.03325 1.47840 1.66420 1.07150 1.14257 1.18749 0.95725 0.74959 0.96060 1.21816 1.00163 0.91932 1.43331 0.91462 1.25858 1.00345 0.97397 0.95521 1.70084 1.34019 1.03831 1.49126 0.85420 0.79355 0.78540 0.77848 1.18345 1.19736 1.21393 1.18547 0.82116 0.83176 0.79851 1.90651 1.27447 1.71833 1.56924 1.19852 1.02792 0.97688 0.96131 1.24781 0.90458 0.95029 1.04155 1.21313 1.03126 0.97029 0.95469 1.18967 0.96158 0.89192 0.94201 1.17221 1.02564 0.95808 0.85594 1.20585 0.99239 0.93661 0.96476 1.43775 1.24637 1.45692 1.16157 1.21230 0.84154 0.76836 0.86593 1.90756 1.78007 1.51935 1.22867 1.22085 0.91923 1.04002 0.85729 0.83355 1.22428 0.99287 0.97214 1.04835 1.58570 1.25157 1.32517 1.03639 1.22920 0.89316 1.03596 0.97846 0.88143 0.87892 0.92485 0.89687 0.91030 0.86028 0.91931 0.96220 0.99125 0.92582 0.74681 0.79928 0.86347 0.74645 0.90548 0.87149 0.93394 0.87979 0.87823 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.10 8.83 71.98 0.64 -4.47 16 2 C 0.13 3.73 3.15 44.99 0.14 3.88 16 3 C -0.19 -4.11 7.82 71.98 0.56 -3.55 16 4 N -0.62 -26.33 2.44 -805.88 -1.97 -28.30 16 5 C 0.27 14.15 5.39 85.63 0.46 14.62 16 6 C -0.53 -29.03 8.24 25.60 0.21 -28.82 16 7 H 0.07 3.52 7.16 -2.91 -0.02 3.50 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 10 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.57 24.90 5.95 86.69 0.52 25.41 16 15 O -0.59 -30.93 16.44 -4.05 -0.07 -31.00 16 16 C -0.16 -5.29 4.84 -20.07 -0.10 -5.39 16 17 C -0.13 -2.95 4.39 22.51 0.10 -2.85 16 18 C -0.15 -2.50 8.95 22.35 0.20 -2.30 16 19 C 0.12 2.35 5.07 38.57 0.20 2.54 16 20 C 0.08 2.20 6.18 38.10 0.24 2.43 16 21 C -0.08 -2.46 9.48 22.61 0.21 -2.25 16 22 N -0.66 -16.49 5.49 -302.63 -1.66 -18.15 16 23 C 0.52 12.95 7.16 87.59 0.63 13.58 16 24 O -0.56 -17.21 17.96 -3.05 -0.05 -17.26 16 25 C 0.07 1.19 2.92 44.22 0.13 1.32 16 26 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 27 C -0.18 -2.57 8.47 71.98 0.61 -1.96 16 28 N -0.48 -7.34 4.85 -700.47 -3.40 -10.75 16 29 C 0.01 0.05 7.69 127.69 0.98 1.03 16 30 H 0.10 2.14 4.43 -2.39 -0.01 2.13 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.86 6.27 -2.38 -0.01 1.85 16 33 H 0.09 2.49 8.01 -2.39 -0.02 2.47 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.63 5.91 -2.39 -0.01 1.61 16 36 H 0.06 1.72 3.89 -2.39 -0.01 1.71 16 37 H 0.02 1.08 7.98 -2.39 -0.02 1.06 16 38 H -0.01 -0.59 7.45 -2.39 -0.02 -0.61 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.24 4.82 0.44 -58.24 -0.03 4.80 16 41 H 0.18 1.41 5.90 -2.91 -0.02 1.39 16 42 H 0.12 4.10 7.73 -2.91 -0.02 4.08 16 43 H 0.41 9.91 8.90 -92.71 -0.83 9.08 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 0.92 6.45 -2.39 -0.02 0.90 16 46 H 0.05 0.91 7.29 -2.38 -0.02 0.90 16 47 H 0.10 0.30 8.11 -2.38 -0.02 0.28 16 48 H 0.10 0.37 6.65 -2.39 -0.02 0.35 16 49 H 0.06 0.35 6.55 -2.39 -0.02 0.33 16 Total: -1.00 -80.43 371.35 1.52 -78.91 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.17 Total: 22.40 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.19 Total: 14.11 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -6.75 Total: -112.22 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.12 Total: -48.26 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -80.43 1.52 -78.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531402311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.235 kcal (2) G-P(sol) polarization free energy of solvation -80.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds