Wall clock time and date at job start Wed Apr 1 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46976 * 2 1 4 4 N 1.46898 * 109.46845 * 119.99575 * 2 1 3 5 5 C 1.46895 * 111.00486 * 274.99909 * 4 2 1 6 6 C 1.52999 * 109.47274 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47083 * 60.00591 * 6 5 4 8 8 O 1.42895 * 109.47213 * 300.00335 * 6 5 4 9 9 C 1.53002 * 109.47163 * 180.02562 * 6 5 4 10 10 O 1.42899 * 109.47228 * 184.99912 * 9 6 5 11 11 C 1.35676 * 117.00194 * 179.97438 * 10 9 6 12 12 C 1.39318 * 119.81422 * 359.72988 * 11 10 9 13 13 C 1.36437 * 120.18150 * 179.75663 * 12 11 10 14 14 C 1.40833 * 119.81215 * 0.51195 * 13 12 11 15 15 C 1.41213 * 120.17773 * 179.71492 * 14 13 12 16 16 H 1.07998 * 120.00137 * 24.58126 * 15 14 13 17 17 C 1.39899 * 120.00036 * 204.57230 * 15 14 13 18 18 N 1.30877 * 119.99910 * 17.94064 * 17 15 14 19 19 Si 1.86800 * 119.99977 * 197.93657 * 17 15 14 20 20 H 1.48503 * 109.46974 * 90.00069 * 19 17 15 21 21 H 1.48495 * 109.46841 * 209.99994 * 19 17 15 22 22 H 1.48502 * 109.47293 * 330.00284 * 19 17 15 23 23 C 1.40830 * 119.64041 * 359.74516 * 14 13 12 24 24 C 1.36434 * 119.81422 * 359.97438 * 23 14 13 25 25 C 1.50694 * 109.47126 * 240.00069 * 2 1 3 26 26 C 1.39866 * 125.90096 * 85.01963 * 25 2 1 27 27 C 1.35317 * 107.92213 * 179.97438 * 26 25 2 28 28 N 1.34944 * 107.74456 * 359.97438 * 27 26 25 29 29 C 1.46507 * 126.03963 * 179.97438 * 28 27 26 30 30 N 1.30843 * 125.89769 * 264.97624 * 25 2 1 31 31 H 1.09003 * 109.46561 * 59.99933 * 1 2 3 32 32 H 1.08990 * 109.46896 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46801 * 300.00500 * 1 2 3 34 34 H 1.00899 * 110.99916 * 38.96193 * 4 2 1 35 35 H 1.08997 * 109.47417 * 300.00391 * 5 4 2 36 36 H 1.09004 * 109.46583 * 60.00198 * 5 4 2 37 37 H 0.96698 * 114.00106 * 299.99850 * 8 6 5 38 38 H 1.08997 * 109.47322 * 305.00589 * 9 6 5 39 39 H 1.09002 * 109.46861 * 65.00034 * 9 6 5 40 40 H 1.08001 * 119.90919 * 0.02562 * 12 11 10 41 41 H 1.08005 * 120.09439 * 180.25366 * 13 12 11 42 42 H 0.96993 * 120.00161 * 179.97438 * 18 17 15 43 43 H 1.08007 * 120.09297 * 179.97438 * 23 14 13 44 44 H 1.08001 * 119.91071 * 179.97438 * 24 23 14 45 45 H 1.07996 * 126.04041 * 359.93963 * 26 25 2 46 46 H 1.07999 * 126.13043 * 180.02562 * 27 26 25 47 47 H 1.08995 * 109.47099 * 270.03360 * 29 28 27 48 48 H 1.09006 * 109.46603 * 30.02564 * 29 28 27 49 49 H 1.08997 * 109.47311 * 150.02622 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 1 3.5904 -0.9272 3.3692 8 8 1.7078 -1.6125 3.8740 9 6 2.6598 0.4198 4.7698 10 8 3.2470 -0.2539 5.8848 11 6 3.3793 0.4560 7.0335 12 6 2.9546 1.7820 7.0811 13 6 3.0795 2.5013 8.2337 14 6 3.6495 1.9030 9.3741 15 6 3.7881 2.6422 10.5693 16 1 3.1388 3.4833 10.7624 17 6 4.7663 2.2848 11.5034 18 7 5.7651 1.5191 11.1444 19 14 4.6469 2.9008 13.2629 20 1 3.8704 1.9302 14.0754 21 1 6.0115 3.0424 13.8313 22 1 3.9640 4.2193 13.2806 23 6 4.0812 0.5638 9.3158 24 6 3.9438 -0.1434 8.1571 25 6 2.0324 -0.7104 -1.2304 26 6 2.2130 -0.1359 -2.4928 27 6 2.6768 -1.0968 -3.3251 28 7 2.7863 -2.2387 -2.6144 29 6 3.2513 -3.5307 -3.1252 30 7 2.3756 -1.9709 -1.3021 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.4496 -1.4979 1.4100 35 1 2.7588 1.0462 2.1183 36 1 1.0870 0.6163 2.5525 37 1 0.8019 -1.3350 4.0675 38 1 3.2653 1.2881 4.5098 39 1 1.6525 0.7444 5.0307 40 1 2.5213 2.2405 6.2045 41 1 2.7460 3.5280 8.2702 42 1 6.4436 1.2716 11.7919 43 1 4.5198 0.0978 10.1859 44 1 4.2747 -1.1704 8.1106 45 1 2.0165 0.8927 -2.7568 46 1 2.9171 -0.9720 -4.3706 47 1 2.4014 -4.0992 -3.5028 48 1 3.9658 -3.3665 -3.9319 49 1 3.7325 -4.0874 -2.3212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577098671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:02 Heat of formation + Delta-G solvation = 10.475474 kcal Electronic energy + Delta-G solvation = -28482.705493 eV Core-core repulsion = 24411.624442 eV Total energy + Delta-G solvation = -4071.081051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.40020 -39.11363 -38.03240 -36.60311 -35.83372 -33.38680 -33.29223 -31.37833 -30.24079 -29.93396 -29.16959 -28.65775 -26.91488 -25.36468 -24.42714 -22.99978 -21.96269 -21.24788 -20.68116 -20.54446 -19.65235 -17.49386 -17.33453 -17.01509 -16.40969 -16.30907 -15.76488 -15.51923 -15.17399 -15.07385 -14.57853 -14.22112 -14.06123 -13.91765 -13.77842 -13.53798 -13.47214 -13.14233 -12.87406 -12.81479 -12.64032 -12.24505 -12.14943 -12.08201 -12.01072 -11.75716 -11.58833 -11.36597 -11.13640 -10.91401 -10.79738 -10.73332 -10.59621 -10.00274 -9.90068 -9.79897 -9.46074 -9.30621 -9.00272 -8.81341 -8.58165 -7.61813 -7.00597 -6.69992 -4.23331 1.68009 2.27997 2.56378 2.79961 2.97519 3.10123 3.13356 3.23496 3.56367 3.96948 4.19248 4.24346 4.46086 4.54440 4.61253 4.64344 4.78390 4.83575 4.86412 4.97890 5.05522 5.07662 5.19904 5.24100 5.34543 5.42213 5.47399 5.49902 5.61742 5.66999 5.69863 5.74355 5.79412 6.08459 6.13245 6.25949 6.40411 6.72396 6.75809 6.78817 7.00117 7.13562 7.20920 7.22688 7.48948 7.57816 7.58093 7.68669 7.81687 8.02956 8.22933 8.48267 8.68051 8.92146 9.01298 10.24456 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.001504 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.644995 B =18615.438332 C =18938.244775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.165 3.835 3 H 0.096 0.904 4 N -0.671 5.671 5 C 0.032 3.968 6 C 0.113 3.887 7 H 0.114 0.886 8 O -0.549 6.549 9 C 0.039 3.961 10 O -0.317 6.317 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.198 4.198 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.133 4.133 24 C -0.119 4.119 25 C 0.086 3.914 26 C -0.271 4.271 27 C 0.049 3.951 28 N -0.382 5.382 29 C 0.102 3.898 30 N -0.268 5.268 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.354 0.646 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.368 0.632 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.280 0.720 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.145 0.855 46 H 0.171 0.829 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 -4.463 -26.781 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 H 0.114 0.886 4 N -0.303 5.303 5 C -0.098 4.098 6 C 0.054 3.946 7 H 0.132 0.868 8 O -0.353 6.353 9 C -0.038 4.038 10 O -0.232 6.232 11 C -0.051 4.051 12 C -0.188 4.188 13 C -0.218 4.218 14 C 0.085 3.915 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.082 4.082 26 C -0.301 4.301 27 C -0.097 4.097 28 N -0.164 5.164 29 C -0.039 4.039 30 N -0.089 5.089 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.214 0.786 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.163 0.837 46 H 0.188 0.812 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.958 -6.294 -26.413 27.798 hybrid contribution -1.412 1.847 0.379 2.356 sum -7.371 -4.447 -26.034 27.420 Atomic orbital electron populations 1.22459 0.95760 1.02750 1.02664 1.19861 0.92525 0.96433 0.85903 0.88598 1.60248 1.58227 1.09406 1.02416 1.22572 1.00225 0.95930 0.91069 1.21950 0.95458 0.87288 0.89951 0.86839 1.86665 1.23033 1.33741 1.91852 1.23096 0.97931 0.95562 0.87204 1.85894 1.78904 1.39833 1.18614 1.18633 1.08540 0.91659 0.86285 1.20396 1.06090 0.93879 0.98391 1.20550 1.09859 0.98353 0.93032 1.17599 0.90334 0.91588 0.91992 1.19463 1.15161 1.13381 1.01432 0.90568 1.25876 0.93818 0.93884 1.00607 1.69833 1.07890 1.29041 1.35727 0.86328 0.78265 0.80133 0.82056 1.19331 1.20399 1.18733 1.20982 1.03499 0.94171 0.96589 1.19849 1.03020 0.98997 0.91954 1.22141 0.99150 0.91759 0.95178 1.21316 1.14613 1.01054 0.93090 1.22479 1.01867 0.86649 0.98692 1.48617 1.51213 1.09041 1.07543 1.21828 1.00098 0.81802 1.00195 1.77463 1.19405 1.16634 0.95438 0.91558 0.92072 0.91838 0.82510 0.89699 0.94570 0.78569 0.92343 0.93089 0.88946 0.88793 0.90926 0.85674 0.88425 0.83716 0.81190 0.90941 0.89672 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.14 37.16 0.34 -0.98 16 2 C 0.17 1.50 3.07 -68.86 -0.21 1.29 16 3 H 0.10 0.79 7.80 -51.93 -0.40 0.38 16 4 N -0.67 -7.12 6.07 -107.95 -0.66 -7.77 16 5 C 0.03 0.32 5.19 -3.83 -0.02 0.30 16 6 C 0.11 1.48 3.52 -26.73 -0.09 1.38 16 7 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 8 O -0.55 -7.44 12.64 -40.11 -0.51 -7.94 16 9 C 0.04 0.61 4.36 37.16 0.16 0.77 16 10 O -0.32 -6.65 10.09 -23.61 -0.24 -6.88 16 11 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 12 C -0.17 -3.85 8.96 -39.83 -0.36 -4.20 16 13 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 14 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 15 C -0.46 -12.44 9.04 -37.83 -0.34 -12.79 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 18 N -0.80 -20.94 10.96 55.55 0.61 -20.33 16 19 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 24 C -0.12 -2.97 9.92 -39.83 -0.40 -3.36 16 25 C 0.09 0.91 6.19 -82.41 -0.51 0.40 16 26 C -0.27 -2.39 10.74 -40.01 -0.43 -2.82 16 27 C 0.05 0.37 11.49 -17.22 -0.20 0.18 16 28 N -0.38 -3.52 4.01 -68.16 -0.27 -3.79 16 29 C 0.10 0.53 11.47 59.85 0.69 1.21 16 30 N -0.27 -3.26 12.35 33.67 0.42 -2.84 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 34 H 0.35 3.95 7.86 -39.29 -0.31 3.64 16 35 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 36 H 0.04 0.31 7.44 -51.93 -0.39 -0.08 16 37 H 0.37 3.65 9.04 45.56 0.41 4.07 16 38 H 0.06 0.87 7.63 -51.93 -0.40 0.48 16 39 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 40 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 41 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 42 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 43 H 0.13 3.40 6.16 -52.48 -0.32 3.07 16 44 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 45 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -33.19 408.58 -9.27 -42.47 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.72 Total: 11.76 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.04 Total: -24.66 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.10 Total: -34.73 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.75 Total: -14.83 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.19 -9.27 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577098671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.944 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds