Wall clock time and date at job start Wed Apr 1 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46976 * 2 1 4 4 N 1.46898 * 109.46845 * 119.99575 * 2 1 3 5 5 C 1.46895 * 111.00486 * 274.99909 * 4 2 1 6 6 C 1.52999 * 109.47274 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47083 * 60.00591 * 6 5 4 8 8 O 1.42895 * 109.47213 * 300.00335 * 6 5 4 9 9 C 1.53002 * 109.47163 * 180.02562 * 6 5 4 10 10 O 1.42899 * 109.47228 * 184.99912 * 9 6 5 11 11 C 1.35676 * 117.00194 * 179.97438 * 10 9 6 12 12 C 1.39318 * 119.81422 * 359.72988 * 11 10 9 13 13 C 1.36437 * 120.18150 * 179.75663 * 12 11 10 14 14 C 1.40833 * 119.81215 * 0.51195 * 13 12 11 15 15 C 1.41213 * 120.17773 * 179.71492 * 14 13 12 16 16 H 1.07998 * 120.00137 * 24.58126 * 15 14 13 17 17 C 1.39899 * 120.00036 * 204.57230 * 15 14 13 18 18 N 1.30877 * 119.99910 * 17.94064 * 17 15 14 19 19 Si 1.86800 * 119.99977 * 197.93657 * 17 15 14 20 20 H 1.48503 * 109.46974 * 90.00069 * 19 17 15 21 21 H 1.48495 * 109.46841 * 209.99994 * 19 17 15 22 22 H 1.48502 * 109.47293 * 330.00284 * 19 17 15 23 23 C 1.40830 * 119.64041 * 359.74516 * 14 13 12 24 24 C 1.36434 * 119.81422 * 359.97438 * 23 14 13 25 25 C 1.50694 * 109.47126 * 240.00069 * 2 1 3 26 26 C 1.39866 * 125.90096 * 85.01963 * 25 2 1 27 27 C 1.35317 * 107.92213 * 179.97438 * 26 25 2 28 28 N 1.34944 * 107.74456 * 359.97438 * 27 26 25 29 29 C 1.46507 * 126.03963 * 179.97438 * 28 27 26 30 30 N 1.30843 * 125.89769 * 264.97624 * 25 2 1 31 31 H 1.09003 * 109.46561 * 59.99933 * 1 2 3 32 32 H 1.08990 * 109.46896 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46801 * 300.00500 * 1 2 3 34 34 H 1.00899 * 110.99916 * 38.96193 * 4 2 1 35 35 H 1.08997 * 109.47417 * 300.00391 * 5 4 2 36 36 H 1.09004 * 109.46583 * 60.00198 * 5 4 2 37 37 H 0.96698 * 114.00106 * 299.99850 * 8 6 5 38 38 H 1.08997 * 109.47322 * 305.00589 * 9 6 5 39 39 H 1.09002 * 109.46861 * 65.00034 * 9 6 5 40 40 H 1.08001 * 119.90919 * 0.02562 * 12 11 10 41 41 H 1.08005 * 120.09439 * 180.25366 * 13 12 11 42 42 H 0.96993 * 120.00161 * 179.97438 * 18 17 15 43 43 H 1.08007 * 120.09297 * 179.97438 * 23 14 13 44 44 H 1.08001 * 119.91071 * 179.97438 * 24 23 14 45 45 H 1.07996 * 126.04041 * 359.93963 * 26 25 2 46 46 H 1.07999 * 126.13043 * 180.02562 * 27 26 25 47 47 H 1.08995 * 109.47099 * 270.03360 * 29 28 27 48 48 H 1.09006 * 109.46603 * 30.02564 * 29 28 27 49 49 H 1.08997 * 109.47311 * 150.02622 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 1 3.5904 -0.9272 3.3692 8 8 1.7078 -1.6125 3.8740 9 6 2.6598 0.4198 4.7698 10 8 3.2470 -0.2539 5.8848 11 6 3.3793 0.4560 7.0335 12 6 2.9546 1.7820 7.0811 13 6 3.0795 2.5013 8.2337 14 6 3.6495 1.9030 9.3741 15 6 3.7881 2.6422 10.5693 16 1 3.1388 3.4833 10.7624 17 6 4.7663 2.2848 11.5034 18 7 5.7651 1.5191 11.1444 19 14 4.6469 2.9008 13.2629 20 1 3.8704 1.9302 14.0754 21 1 6.0115 3.0424 13.8313 22 1 3.9640 4.2193 13.2806 23 6 4.0812 0.5638 9.3158 24 6 3.9438 -0.1434 8.1571 25 6 2.0324 -0.7104 -1.2304 26 6 2.2130 -0.1359 -2.4928 27 6 2.6768 -1.0968 -3.3251 28 7 2.7863 -2.2387 -2.6144 29 6 3.2513 -3.5307 -3.1252 30 7 2.3756 -1.9709 -1.3021 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.4496 -1.4979 1.4100 35 1 2.7588 1.0462 2.1183 36 1 1.0870 0.6163 2.5525 37 1 0.8019 -1.3350 4.0675 38 1 3.2653 1.2881 4.5098 39 1 1.6525 0.7444 5.0307 40 1 2.5213 2.2405 6.2045 41 1 2.7460 3.5280 8.2702 42 1 6.4436 1.2716 11.7919 43 1 4.5198 0.0978 10.1859 44 1 4.2747 -1.1704 8.1106 45 1 2.0165 0.8927 -2.7568 46 1 2.9171 -0.9720 -4.3706 47 1 2.4014 -4.0992 -3.5028 48 1 3.9658 -3.3665 -3.9319 49 1 3.7325 -4.0874 -2.3212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577098671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:01 Heat of formation + Delta-G solvation = -12.722986 kcal Electronic energy + Delta-G solvation = -28483.711454 eV Core-core repulsion = 24411.624442 eV Total energy + Delta-G solvation = -4072.087012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.02255 -40.65715 -39.24093 -38.00689 -36.98805 -35.17634 -34.02971 -32.32715 -31.61755 -30.95007 -30.86640 -29.88358 -27.43666 -26.88516 -25.81148 -23.81024 -23.13059 -22.45706 -22.21601 -21.83806 -20.34019 -19.24875 -18.76248 -17.96101 -17.53929 -17.43155 -17.03865 -16.49980 -16.22917 -16.02568 -15.76722 -15.64845 -15.43240 -14.90002 -14.82570 -14.51471 -14.36456 -14.12395 -14.05438 -13.93679 -13.75354 -13.51994 -13.26844 -13.24777 -13.06297 -12.84794 -12.79427 -12.66103 -12.57421 -12.37551 -12.21950 -11.94960 -11.67302 -11.58115 -11.44345 -11.21271 -10.96910 -10.87460 -10.13707 -9.55783 -9.44265 -9.30008 -8.92037 -8.58943 -6.22294 0.95342 1.03197 1.07422 1.40177 1.53349 1.53523 1.77628 1.90952 2.23246 2.40648 2.73151 3.23141 3.49748 3.65996 3.70665 3.94163 4.00458 4.04064 4.05081 4.17119 4.27737 4.29172 4.29877 4.37391 4.39480 4.45501 4.47775 4.68251 4.71069 4.72823 4.82462 4.86990 4.88902 5.00786 5.05604 5.09852 5.16130 5.21781 5.22466 5.29065 5.59464 5.64855 5.77061 5.89060 6.04379 6.06393 6.25930 6.26805 6.41437 6.57383 6.79796 6.84487 6.92397 6.95581 7.11249 8.37706 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.001504 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.644995 B =18615.438332 C =18938.244775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.106 0.894 4 N -0.685 5.685 5 C 0.044 3.956 6 C 0.124 3.876 7 H 0.090 0.910 8 O -0.567 6.567 9 C 0.031 3.969 10 O -0.333 6.333 11 C 0.000 4.000 12 C -0.164 4.164 13 C -0.206 4.206 14 C 0.053 3.947 15 C -0.499 4.499 16 H 0.077 0.923 17 C 0.033 3.967 18 N -0.832 5.832 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.257 1.257 23 C -0.153 4.153 24 C -0.136 4.136 25 C 0.070 3.930 26 C -0.291 4.291 27 C 0.055 3.945 28 N -0.391 5.391 29 C 0.095 3.905 30 N -0.319 5.319 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.349 0.651 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.384 0.616 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.163 0.837 46 H 0.210 0.790 47 H 0.084 0.916 48 H 0.115 0.885 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -3.237 -28.615 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 H 0.124 0.876 4 N -0.317 5.317 5 C -0.086 4.086 6 C 0.064 3.936 7 H 0.108 0.892 8 O -0.373 6.373 9 C -0.045 4.045 10 O -0.249 6.249 11 C -0.044 4.044 12 C -0.183 4.183 13 C -0.226 4.226 14 C 0.051 3.949 15 C -0.529 4.529 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.097 4.097 26 C -0.320 4.320 27 C -0.091 4.091 28 N -0.173 5.173 29 C -0.046 4.046 30 N -0.142 5.142 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.180 0.820 46 H 0.226 0.774 47 H 0.102 0.898 48 H 0.134 0.866 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.942 -5.072 -28.277 29.555 hybrid contribution -1.129 1.370 0.707 1.910 sum -8.071 -3.702 -27.569 28.964 Atomic orbital electron populations 1.22366 0.94545 1.02182 1.03591 1.19951 0.93441 0.96451 0.84816 0.87593 1.60204 1.58768 1.09642 1.03057 1.22438 1.01407 0.95321 0.89408 1.21802 0.94738 0.86861 0.90215 0.89211 1.86630 1.24280 1.34415 1.91984 1.23482 0.98633 0.96355 0.86011 1.85887 1.79310 1.40717 1.18962 1.18704 1.06917 0.91949 0.86787 1.20713 1.05124 0.93422 0.99028 1.20812 1.09464 0.99193 0.93102 1.17966 0.91606 0.92031 0.93268 1.19723 1.16279 1.14244 1.02654 0.90467 1.26755 0.92857 0.93814 1.04679 1.69894 1.08588 1.30069 1.37384 0.85192 0.78578 0.79652 0.76195 1.18830 1.19433 1.18067 1.20890 1.04881 0.94579 0.96861 1.20009 1.03628 0.99457 0.92403 1.22503 0.99066 0.91736 0.96359 1.21662 1.15382 1.02318 0.92683 1.23136 1.00126 0.85718 1.00129 1.48946 1.50901 1.10526 1.06951 1.22101 1.01200 0.80648 1.00603 1.77368 1.21416 1.17770 0.97652 0.90664 0.93347 0.90774 0.83157 0.88972 0.92289 0.76707 0.91281 0.91195 0.85086 0.87447 0.90244 0.87335 0.87784 0.81964 0.77368 0.89795 0.86645 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.14 71.98 0.66 -1.57 16 2 C 0.17 2.79 3.07 44.17 0.14 2.93 16 3 H 0.11 1.53 7.80 -2.38 -0.02 1.51 16 4 N -0.68 -13.87 6.07 -495.46 -3.01 -16.88 16 5 C 0.04 0.78 5.19 86.30 0.45 1.23 16 6 C 0.12 3.06 3.52 30.59 0.11 3.17 16 7 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 8 O -0.57 -14.75 12.64 -144.32 -1.82 -16.57 16 9 C 0.03 0.90 4.36 71.98 0.31 1.22 16 10 O -0.33 -13.61 10.09 -85.27 -0.86 -14.47 16 11 C 0.00 0.01 6.71 22.79 0.15 0.17 16 12 C -0.16 -7.22 8.96 22.11 0.20 -7.02 16 13 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 14 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 15 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 16 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 17 C 0.03 1.68 5.13 85.24 0.44 2.12 16 18 N -0.83 -44.75 10.96 21.82 0.24 -44.52 16 19 Si 0.98 38.87 29.60 68.60 2.03 40.90 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 C -0.15 -8.40 8.64 22.48 0.19 -8.20 16 24 C -0.14 -6.91 9.92 22.11 0.22 -6.69 16 25 C 0.07 1.45 6.19 43.10 0.27 1.72 16 26 C -0.29 -4.67 10.74 21.99 0.24 -4.44 16 27 C 0.05 0.73 11.49 83.54 0.96 1.69 16 28 N -0.39 -6.80 4.01 -369.56 -1.48 -8.29 16 29 C 0.09 0.86 11.47 127.77 1.47 2.33 16 30 N -0.32 -7.76 12.35 -47.39 -0.59 -8.34 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 33 H 0.07 0.81 7.45 -2.39 -0.02 0.79 16 34 H 0.35 7.64 7.86 -89.70 -0.71 6.94 16 35 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 36 H 0.06 0.80 7.44 -2.38 -0.02 0.79 16 37 H 0.38 6.96 9.04 -74.06 -0.67 6.29 16 38 H 0.07 1.87 7.63 -2.39 -0.02 1.85 16 39 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 40 H 0.13 4.65 6.27 -2.91 -0.02 4.64 16 41 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 43 H 0.11 6.20 6.16 -2.91 -0.02 6.19 16 44 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 45 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -74.10 408.58 0.21 -73.89 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.40 Total: 39.83 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 6.11 Total: -45.55 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -4.84 Total: -78.03 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -2.68 Total: -31.04 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -74.10 0.21 -73.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577098671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.167 kcal (2) G-P(sol) polarization free energy of solvation -74.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds