Wall clock time and date at job start Wed Apr 1 2020 03:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47359 * 2 1 4 4 N 1.46900 * 109.47209 * 120.00403 * 2 1 3 5 5 C 1.46903 * 110.99649 * 274.99595 * 4 2 1 6 6 C 1.53002 * 109.46671 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47370 * 305.00136 * 6 5 4 8 8 O 1.42901 * 109.46973 * 65.00486 * 6 5 4 9 9 C 1.52999 * 109.46725 * 184.99892 * 6 5 4 10 10 O 1.42902 * 109.47152 * 174.99977 * 9 6 5 11 11 C 1.35674 * 117.00310 * 179.97438 * 10 9 6 12 12 C 1.39312 * 119.81557 * 359.72873 * 11 10 9 13 13 C 1.36435 * 120.18421 * 179.75771 * 12 11 10 14 14 C 1.40843 * 119.81093 * 0.51616 * 13 12 11 15 15 C 1.41210 * 120.17569 * 179.71986 * 14 13 12 16 16 H 1.08002 * 119.99559 * 155.16746 * 15 14 13 17 17 C 1.39882 * 120.00517 * 335.15902 * 15 14 13 18 18 N 1.30886 * 120.00258 * 342.16525 * 17 15 14 19 19 Si 1.86807 * 120.00125 * 162.16099 * 17 15 14 20 20 H 1.48501 * 109.47017 * 94.66201 * 19 17 15 21 21 H 1.48499 * 109.47036 * 214.66191 * 19 17 15 22 22 H 1.48497 * 109.46838 * 334.65902 * 19 17 15 23 23 C 1.40832 * 119.63764 * 359.73638 * 14 13 12 24 24 C 1.36430 * 119.81720 * 0.02562 * 23 14 13 25 25 C 1.50705 * 109.46763 * 240.00178 * 2 1 3 26 26 C 1.39869 * 125.89760 * 84.71922 * 25 2 1 27 27 C 1.35319 * 107.91488 * 179.86276 * 26 25 2 28 28 N 1.34943 * 107.74851 * 0.39425 * 27 26 25 29 29 C 1.46500 * 126.03786 * 179.75179 * 28 27 26 30 30 N 1.30834 * 125.89797 * 265.02402 * 25 2 1 31 31 H 1.09001 * 109.46698 * 59.99670 * 1 2 3 32 32 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46937 * 299.99892 * 1 2 3 34 34 H 1.00898 * 111.00058 * 38.95017 * 4 2 1 35 35 H 1.08997 * 109.47246 * 299.99686 * 5 4 2 36 36 H 1.08999 * 109.46716 * 60.00031 * 5 4 2 37 37 H 0.96702 * 114.00413 * 59.99668 * 8 6 5 38 38 H 1.09000 * 109.47480 * 295.00291 * 9 6 5 39 39 H 1.09007 * 109.47253 * 55.00272 * 9 6 5 40 40 H 1.07997 * 119.90829 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.10032 * 180.25079 * 13 12 11 42 42 H 0.96993 * 120.00275 * 179.97438 * 18 17 15 43 43 H 1.08006 * 120.08779 * 179.97438 * 23 14 13 44 44 H 1.08004 * 119.91293 * 179.97438 * 24 23 14 45 45 H 1.07997 * 126.04236 * 359.97438 * 26 25 2 46 46 H 1.08005 * 126.12129 * 180.14696 * 27 26 25 47 47 H 1.08993 * 109.47261 * 270.02292 * 29 28 27 48 48 H 1.09008 * 109.46884 * 30.02209 * 29 28 27 49 49 H 1.09000 * 109.47513 * 150.02244 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5952 -0.5333 3.5744 7 1 1.9692 -1.4082 3.7499 8 8 3.9434 -0.9497 3.3487 9 6 2.5430 0.3848 4.7971 10 8 2.9107 -0.3541 5.9637 11 6 2.9160 0.3180 7.1423 12 6 2.5775 1.6691 7.1708 13 6 2.5756 2.3510 8.3525 14 6 2.9276 1.6879 9.5441 15 6 2.9339 2.3877 10.7706 16 1 2.8032 1.8514 11.6989 17 6 3.1096 3.7754 10.7833 18 7 3.6081 4.3816 9.7358 19 14 2.6327 4.7635 12.2952 20 1 3.8256 4.9534 13.1590 21 1 2.1093 6.0884 11.8757 22 1 1.5840 4.0342 13.0525 23 6 3.2736 0.3233 9.5057 24 6 3.2658 -0.3453 8.3164 25 6 2.0323 -0.7104 -1.2305 26 6 2.2073 -0.1373 -2.4944 27 6 2.6754 -1.0971 -3.3255 28 7 2.7841 -2.2392 -2.6150 29 6 3.2485 -3.5313 -3.1261 30 7 2.3746 -1.9711 -1.3025 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4496 -1.4980 1.4100 35 1 2.7590 1.0461 2.1182 36 1 1.0872 0.6162 2.5524 37 1 4.5579 -0.2213 3.1849 38 1 3.2366 1.2142 4.6587 39 1 1.5315 0.7733 4.9169 40 1 2.3117 2.1770 6.2555 41 1 2.3090 3.3973 8.3736 42 1 3.7296 5.3438 9.7445 43 1 3.5451 -0.1923 10.4150 44 1 3.5313 -1.3917 8.2851 45 1 2.0062 0.8901 -2.7595 46 1 2.9149 -0.9724 -4.3712 47 1 2.3984 -4.0993 -3.5038 48 1 3.9632 -3.3673 -3.9327 49 1 3.7294 -4.0885 -2.3222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577098672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:06 Heat of formation + Delta-G solvation = 11.998972 kcal Electronic energy + Delta-G solvation = -28556.884174 eV Core-core repulsion = 24485.869187 eV Total energy + Delta-G solvation = -4071.014987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.38679 -39.06508 -37.95642 -36.60617 -35.78593 -33.39351 -33.31386 -31.31701 -30.22312 -29.69596 -29.48282 -28.52558 -26.89945 -25.35525 -24.39902 -22.95771 -22.02221 -21.25610 -20.89099 -20.33626 -19.61344 -17.45528 -17.32276 -16.93609 -16.56143 -16.09654 -15.73729 -15.47112 -15.15476 -15.02378 -14.60733 -14.22423 -14.05832 -13.92103 -13.75736 -13.50849 -13.45081 -13.14039 -12.80524 -12.78420 -12.63968 -12.38475 -12.14522 -11.98071 -11.94903 -11.71386 -11.56343 -11.41088 -11.10342 -10.98992 -10.78454 -10.73114 -10.56986 -9.90226 -9.87318 -9.74673 -9.44644 -9.34289 -8.99274 -8.79861 -8.54024 -7.63662 -6.98727 -6.71575 -4.23500 1.69352 2.29198 2.57868 2.78239 2.98281 3.08691 3.13124 3.22849 3.57589 3.96155 4.20371 4.24220 4.51703 4.59035 4.62262 4.63930 4.78990 4.83808 4.87681 5.01926 5.06307 5.09290 5.24108 5.25973 5.31817 5.43556 5.49476 5.52505 5.62830 5.67735 5.70664 5.76115 5.81284 6.10795 6.12605 6.30937 6.41751 6.71588 6.75840 6.79736 6.91193 7.08423 7.18059 7.29695 7.43149 7.57947 7.59239 7.85583 7.92568 8.01922 8.17496 8.46987 8.67104 8.91771 9.01240 10.23366 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.001579 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.932053 B =17724.760691 C =18323.579406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.165 3.835 3 H 0.096 0.904 4 N -0.666 5.666 5 C 0.030 3.970 6 C 0.116 3.884 7 H 0.102 0.898 8 O -0.540 6.540 9 C 0.039 3.961 10 O -0.318 6.318 11 C -0.009 4.009 12 C -0.175 4.175 13 C -0.134 4.134 14 C 0.086 3.914 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.801 5.801 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.195 4.195 24 C -0.113 4.113 25 C 0.086 3.914 26 C -0.271 4.271 27 C 0.049 3.951 28 N -0.382 5.382 29 C 0.102 3.898 30 N -0.267 5.267 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.348 0.652 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.371 0.629 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.145 0.855 46 H 0.171 0.829 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -6.385 -26.066 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.114 0.886 4 N -0.297 5.297 5 C -0.099 4.099 6 C 0.056 3.944 7 H 0.120 0.880 8 O -0.344 6.344 9 C -0.039 4.039 10 O -0.234 6.234 11 C -0.052 4.052 12 C -0.194 4.194 13 C -0.153 4.153 14 C 0.084 3.916 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.427 5.427 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.215 4.215 24 C -0.131 4.131 25 C -0.082 4.082 26 C -0.301 4.301 27 C -0.097 4.097 28 N -0.164 5.164 29 C -0.039 4.039 30 N -0.089 5.089 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.217 0.783 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.163 0.837 46 H 0.188 0.812 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.418 -8.126 -25.679 27.150 hybrid contribution -0.967 2.324 0.069 2.518 sum -4.385 -5.802 -25.610 26.623 Atomic orbital electron populations 1.22469 0.95759 1.02751 1.02749 1.19862 0.92491 0.96435 0.85926 0.88605 1.60267 1.57809 1.09079 1.02534 1.22624 1.00494 0.95847 0.90972 1.21815 0.85179 0.97514 0.89862 0.87982 1.86635 1.17383 1.36775 1.93604 1.23125 0.99947 0.94779 0.86021 1.85867 1.86085 1.38022 1.13394 1.18611 1.10749 0.91371 0.84469 1.20594 1.07277 0.93227 0.98279 1.20924 1.02800 1.00088 0.91533 1.17599 0.89534 0.91042 0.93404 1.19459 1.44321 0.91720 0.93850 0.90516 1.25868 0.92384 0.98442 0.97446 1.69843 1.31634 1.11169 1.30097 0.86344 0.79806 0.79023 0.81792 1.19648 1.20155 1.18490 1.20605 1.09262 0.96089 0.95542 1.19626 1.04533 0.98261 0.90720 1.22136 0.99127 0.91767 0.95137 1.21316 1.14565 1.01117 0.93091 1.22475 1.01861 0.86687 0.98694 1.48610 1.51262 1.08989 1.07558 1.21822 1.00088 0.81815 1.00185 1.77456 1.19430 1.16611 0.95370 0.91541 0.92097 0.91748 0.83261 0.90230 0.93894 0.78282 0.92789 0.92554 0.88904 0.86202 0.91052 0.88208 0.88470 0.83741 0.81214 0.90964 0.89690 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.14 37.16 0.34 -1.03 16 2 C 0.17 1.53 3.07 -68.86 -0.21 1.32 16 3 H 0.10 0.81 7.80 -51.93 -0.40 0.40 16 4 N -0.67 -7.10 6.02 -107.94 -0.65 -7.75 16 5 C 0.03 0.31 5.12 -3.82 -0.02 0.29 16 6 C 0.12 1.54 3.43 -26.73 -0.09 1.45 16 7 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 8 O -0.54 -8.07 13.25 -40.08 -0.53 -8.61 16 9 C 0.04 0.61 4.36 37.16 0.16 0.77 16 10 O -0.32 -6.66 10.09 -23.57 -0.24 -6.89 16 11 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 12 C -0.17 -4.13 8.96 -39.83 -0.36 -4.49 16 13 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 14 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 15 C -0.46 -12.40 9.04 -37.84 -0.34 -12.75 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 18 N -0.80 -20.85 10.97 55.54 0.61 -20.24 16 19 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 23 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 24 C -0.11 -2.69 9.92 -39.83 -0.40 -3.09 16 25 C 0.09 0.93 6.19 -82.40 -0.51 0.42 16 26 C -0.27 -2.42 10.74 -40.01 -0.43 -2.85 16 27 C 0.05 0.38 11.49 -17.22 -0.20 0.18 16 28 N -0.38 -3.55 4.01 -68.16 -0.27 -3.82 16 29 C 0.10 0.53 11.47 59.85 0.69 1.22 16 30 N -0.27 -3.26 12.35 33.67 0.42 -2.85 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 34 H 0.35 3.79 8.47 -39.29 -0.33 3.45 16 35 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.04 0.39 7.44 -51.93 -0.39 0.00 16 37 H 0.37 4.44 9.05 45.56 0.41 4.85 16 38 H 0.05 0.83 7.63 -51.93 -0.40 0.44 16 39 H 0.06 0.84 7.66 -51.93 -0.40 0.45 16 40 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 41 H 0.12 3.21 6.18 -52.49 -0.32 2.88 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 44 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 45 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 49 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 409.62 15.07 6.17 6.17 Total: -1.00 -33.31 409.62 -9.30 -42.60 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.74 Total: 12.25 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.03 Total: -24.61 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.10 Total: -34.65 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.77 Total: -15.50 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.31 -9.30 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577098672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.604 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds