Wall clock time and date at job start Wed Apr 1 2020 03:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47359 * 2 1 4 4 N 1.46900 * 109.47209 * 120.00403 * 2 1 3 5 5 C 1.46903 * 110.99649 * 274.99595 * 4 2 1 6 6 C 1.53002 * 109.46671 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47370 * 305.00136 * 6 5 4 8 8 O 1.42901 * 109.46973 * 65.00486 * 6 5 4 9 9 C 1.52999 * 109.46725 * 184.99892 * 6 5 4 10 10 O 1.42902 * 109.47152 * 174.99977 * 9 6 5 11 11 C 1.35674 * 117.00310 * 179.97438 * 10 9 6 12 12 C 1.39312 * 119.81557 * 359.72873 * 11 10 9 13 13 C 1.36435 * 120.18421 * 179.75771 * 12 11 10 14 14 C 1.40843 * 119.81093 * 0.51616 * 13 12 11 15 15 C 1.41210 * 120.17569 * 179.71986 * 14 13 12 16 16 H 1.08002 * 119.99559 * 155.16746 * 15 14 13 17 17 C 1.39882 * 120.00517 * 335.15902 * 15 14 13 18 18 N 1.30886 * 120.00258 * 342.16525 * 17 15 14 19 19 Si 1.86807 * 120.00125 * 162.16099 * 17 15 14 20 20 H 1.48501 * 109.47017 * 94.66201 * 19 17 15 21 21 H 1.48499 * 109.47036 * 214.66191 * 19 17 15 22 22 H 1.48497 * 109.46838 * 334.65902 * 19 17 15 23 23 C 1.40832 * 119.63764 * 359.73638 * 14 13 12 24 24 C 1.36430 * 119.81720 * 0.02562 * 23 14 13 25 25 C 1.50705 * 109.46763 * 240.00178 * 2 1 3 26 26 C 1.39869 * 125.89760 * 84.71922 * 25 2 1 27 27 C 1.35319 * 107.91488 * 179.86276 * 26 25 2 28 28 N 1.34943 * 107.74851 * 0.39425 * 27 26 25 29 29 C 1.46500 * 126.03786 * 179.75179 * 28 27 26 30 30 N 1.30834 * 125.89797 * 265.02402 * 25 2 1 31 31 H 1.09001 * 109.46698 * 59.99670 * 1 2 3 32 32 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46937 * 299.99892 * 1 2 3 34 34 H 1.00898 * 111.00058 * 38.95017 * 4 2 1 35 35 H 1.08997 * 109.47246 * 299.99686 * 5 4 2 36 36 H 1.08999 * 109.46716 * 60.00031 * 5 4 2 37 37 H 0.96702 * 114.00413 * 59.99668 * 8 6 5 38 38 H 1.09000 * 109.47480 * 295.00291 * 9 6 5 39 39 H 1.09007 * 109.47253 * 55.00272 * 9 6 5 40 40 H 1.07997 * 119.90829 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.10032 * 180.25079 * 13 12 11 42 42 H 0.96993 * 120.00275 * 179.97438 * 18 17 15 43 43 H 1.08006 * 120.08779 * 179.97438 * 23 14 13 44 44 H 1.08004 * 119.91293 * 179.97438 * 24 23 14 45 45 H 1.07997 * 126.04236 * 359.97438 * 26 25 2 46 46 H 1.08005 * 126.12129 * 180.14696 * 27 26 25 47 47 H 1.08993 * 109.47261 * 270.02292 * 29 28 27 48 48 H 1.09008 * 109.46884 * 30.02209 * 29 28 27 49 49 H 1.09000 * 109.47513 * 150.02244 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5952 -0.5333 3.5744 7 1 1.9692 -1.4082 3.7499 8 8 3.9434 -0.9497 3.3487 9 6 2.5430 0.3848 4.7971 10 8 2.9107 -0.3541 5.9637 11 6 2.9160 0.3180 7.1423 12 6 2.5775 1.6691 7.1708 13 6 2.5756 2.3510 8.3525 14 6 2.9276 1.6879 9.5441 15 6 2.9339 2.3877 10.7706 16 1 2.8032 1.8514 11.6989 17 6 3.1096 3.7754 10.7833 18 7 3.6081 4.3816 9.7358 19 14 2.6327 4.7635 12.2952 20 1 3.8256 4.9534 13.1590 21 1 2.1093 6.0884 11.8757 22 1 1.5840 4.0342 13.0525 23 6 3.2736 0.3233 9.5057 24 6 3.2658 -0.3453 8.3164 25 6 2.0323 -0.7104 -1.2305 26 6 2.2073 -0.1373 -2.4944 27 6 2.6754 -1.0971 -3.3255 28 7 2.7841 -2.2392 -2.6150 29 6 3.2485 -3.5313 -3.1261 30 7 2.3746 -1.9711 -1.3025 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4496 -1.4980 1.4100 35 1 2.7590 1.0461 2.1182 36 1 1.0872 0.6162 2.5524 37 1 4.5579 -0.2213 3.1849 38 1 3.2366 1.2142 4.6587 39 1 1.5315 0.7733 4.9169 40 1 2.3117 2.1770 6.2555 41 1 2.3090 3.3973 8.3736 42 1 3.7296 5.3438 9.7445 43 1 3.5451 -0.1923 10.4150 44 1 3.5313 -1.3917 8.2851 45 1 2.0062 0.8901 -2.7595 46 1 2.9149 -0.9724 -4.3712 47 1 2.3984 -4.0993 -3.5038 48 1 3.9632 -3.3673 -3.9327 49 1 3.7294 -4.0885 -2.3222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577098672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:05 Heat of formation + Delta-G solvation = -11.189471 kcal Electronic energy + Delta-G solvation = -28557.889701 eV Core-core repulsion = 24485.869187 eV Total energy + Delta-G solvation = -4072.020513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.01841 -40.64634 -39.17017 -37.99545 -37.00520 -35.19593 -34.05308 -32.23870 -31.53393 -31.12695 -30.86281 -29.80557 -27.43309 -26.88658 -25.78525 -23.75967 -23.28235 -22.61031 -22.03035 -21.84297 -20.32240 -19.26704 -18.69025 -18.02191 -17.65322 -17.36480 -16.90378 -16.41226 -16.23759 -15.92494 -15.80577 -15.63807 -15.56232 -14.90416 -14.75877 -14.51782 -14.41195 -14.20803 -14.04882 -13.84297 -13.74509 -13.42537 -13.30202 -13.25904 -13.19610 -12.84367 -12.75079 -12.71541 -12.62930 -12.29811 -12.21384 -11.92071 -11.68293 -11.57837 -11.44213 -11.21661 -10.95145 -10.83315 -10.13061 -9.56734 -9.43481 -9.28574 -8.90250 -8.59837 -6.22118 0.94115 1.04554 1.07945 1.40200 1.49921 1.56216 1.78066 1.91226 2.23483 2.39685 2.72769 3.21128 3.54540 3.65947 3.70644 3.91498 3.96079 4.02733 4.08289 4.17113 4.26892 4.28856 4.30348 4.39478 4.40951 4.46010 4.49279 4.64310 4.68655 4.72232 4.82904 4.88525 4.89259 4.98620 5.01700 5.08043 5.14977 5.15693 5.20558 5.37306 5.52706 5.66477 5.77232 5.97434 6.02580 6.06577 6.24202 6.26360 6.36365 6.56666 6.79472 6.87914 6.92846 6.95597 7.10941 8.37346 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.001579 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.932053 B =17724.760691 C =18323.579406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.166 3.834 3 H 0.105 0.895 4 N -0.678 5.678 5 C 0.042 3.958 6 C 0.125 3.875 7 H 0.094 0.906 8 O -0.562 6.562 9 C 0.032 3.968 10 O -0.330 6.330 11 C -0.001 4.001 12 C -0.175 4.175 13 C -0.153 4.153 14 C 0.053 3.947 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.831 5.831 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.205 4.205 24 C -0.124 4.124 25 C 0.071 3.929 26 C -0.291 4.291 27 C 0.055 3.945 28 N -0.391 5.391 29 C 0.095 3.905 30 N -0.318 5.318 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.344 0.656 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.382 0.618 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.162 0.838 46 H 0.209 0.791 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -5.623 -27.819 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.054 3.946 3 H 0.123 0.877 4 N -0.309 5.309 5 C -0.087 4.087 6 C 0.065 3.935 7 H 0.112 0.888 8 O -0.368 6.368 9 C -0.045 4.045 10 O -0.246 6.246 11 C -0.045 4.045 12 C -0.194 4.194 13 C -0.173 4.173 14 C 0.051 3.949 15 C -0.530 4.530 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.458 5.458 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.225 4.225 24 C -0.143 4.143 25 C -0.096 4.096 26 C -0.321 4.321 27 C -0.091 4.091 28 N -0.173 5.173 29 C -0.045 4.045 30 N -0.140 5.140 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.179 0.821 46 H 0.226 0.774 47 H 0.102 0.898 48 H 0.133 0.867 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.781 -7.377 -27.458 28.682 hybrid contribution -0.804 1.964 0.407 2.161 sum -4.585 -5.413 -27.051 27.966 Atomic orbital electron populations 1.22380 0.94698 1.02234 1.03529 1.19935 0.93286 0.96455 0.84922 0.87690 1.60232 1.58320 1.09285 1.03049 1.22482 1.01370 0.95386 0.89478 1.21774 0.84609 0.97072 0.89998 0.88763 1.86601 1.18426 1.38089 1.93656 1.23476 1.00699 0.95415 0.84887 1.85866 1.86013 1.38937 1.13766 1.18729 1.08995 0.91271 0.85489 1.20813 1.06524 0.93456 0.98565 1.20910 1.04185 0.99792 0.92404 1.17967 0.90649 0.92116 0.94150 1.19709 1.46349 0.93091 0.93848 0.90686 1.26712 0.91564 0.98894 1.00740 1.69886 1.31970 1.11925 1.32063 0.85211 0.79494 0.77444 0.77651 1.18877 1.19018 1.18347 1.20791 1.09330 0.95793 0.96573 1.19897 1.04401 0.99259 0.90707 1.22467 0.99087 0.91760 0.96256 1.21655 1.15371 1.02365 0.92699 1.23129 1.00107 0.85750 1.00126 1.48940 1.50917 1.10475 1.06956 1.22099 1.01201 0.80635 1.00603 1.77361 1.21397 1.17684 0.97581 0.90636 0.93228 0.90992 0.83753 0.89276 0.92276 0.76970 0.92065 0.91255 0.86155 0.87448 0.90226 0.87339 0.86629 0.82062 0.77385 0.89802 0.86658 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.14 71.98 0.66 -1.74 16 2 C 0.17 2.88 3.07 44.17 0.14 3.02 16 3 H 0.11 1.59 7.80 -2.39 -0.02 1.57 16 4 N -0.68 -13.88 6.02 -495.43 -2.98 -16.86 16 5 C 0.04 0.79 5.12 86.30 0.44 1.23 16 6 C 0.13 3.16 3.43 30.59 0.10 3.26 16 7 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 8 O -0.56 -16.33 13.25 -144.34 -1.91 -18.24 16 9 C 0.03 0.95 4.36 71.98 0.31 1.26 16 10 O -0.33 -13.44 10.09 -85.27 -0.86 -14.30 16 11 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 12 C -0.17 -8.19 8.96 22.11 0.20 -7.99 16 13 C -0.15 -8.15 8.64 22.49 0.19 -7.95 16 14 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 15 C -0.50 -27.40 9.04 23.40 0.21 -27.19 16 16 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 17 C 0.03 1.76 5.13 85.23 0.44 2.20 16 18 N -0.83 -43.76 10.97 21.82 0.24 -43.52 16 19 Si 0.98 38.47 29.60 68.60 2.03 40.50 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.21 -10.47 9.74 22.48 0.22 -10.25 16 24 C -0.12 -5.91 9.92 22.11 0.22 -5.69 16 25 C 0.07 1.49 6.19 43.10 0.27 1.75 16 26 C -0.29 -4.76 10.74 21.99 0.24 -4.52 16 27 C 0.05 0.74 11.49 83.54 0.96 1.70 16 28 N -0.39 -6.81 4.01 -369.56 -1.48 -8.29 16 29 C 0.09 0.86 11.47 127.77 1.47 2.33 16 30 N -0.32 -7.72 12.35 -47.38 -0.59 -8.30 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.07 0.90 7.45 -2.39 -0.02 0.88 16 34 H 0.34 7.42 8.47 -89.70 -0.76 6.66 16 35 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 36 H 0.06 0.93 7.44 -2.39 -0.02 0.91 16 37 H 0.38 8.77 9.05 -74.06 -0.67 8.10 16 38 H 0.06 1.77 7.63 -2.39 -0.02 1.75 16 39 H 0.07 1.92 7.66 -2.38 -0.02 1.90 16 40 H 0.12 4.82 6.27 -2.91 -0.02 4.81 16 41 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 42 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 43 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 44 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 45 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 46 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -73.11 409.62 0.09 -73.02 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.46 Total: 41.65 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 6.10 Total: -45.65 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -4.81 Total: -76.98 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -2.77 Total: -32.54 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -73.11 0.09 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577098672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.830 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds