Wall clock time and date at job start Wed Apr 1 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 N 1.46498 * 109.46933 * 119.99854 * 2 1 3 5 5 C 1.34779 * 120.00154 * 274.99910 * 4 2 1 6 6 O 1.21348 * 119.99768 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00032 * 180.02562 * 5 4 2 8 8 O 1.21356 * 119.99981 * 353.51350 * 7 5 4 9 9 N 1.34774 * 120.00149 * 173.78998 * 7 5 4 10 10 C 1.47074 * 120.88489 * 180.82986 * 9 7 5 11 11 C 1.53700 * 108.27666 * 128.75482 * 10 9 7 12 12 N 1.46902 * 109.25471 * 54.08571 * 11 10 9 13 13 C 1.46896 * 110.99756 * 172.60834 * 12 11 10 14 14 C 1.50697 * 109.47435 * 294.29945 * 13 12 11 15 15 H 1.08007 * 119.99537 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00581 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00075 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47229 * 59.99877 * 18 16 14 20 20 H 1.48503 * 109.46843 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46945 * 299.99335 * 18 16 14 22 22 C 1.46903 * 111.26791 * 296.75697 * 12 11 10 23 23 C 1.47082 * 120.87694 * 1.11057 * 9 7 5 24 24 C 1.50699 * 109.47211 * 239.99794 * 2 1 3 25 25 C 1.38234 * 120.00046 * 279.72947 * 24 2 1 26 26 C 1.38234 * 119.99830 * 179.80810 * 25 24 2 27 27 C 1.38237 * 120.00027 * 0.40011 * 26 25 24 28 28 C 1.38236 * 120.00076 * 359.85063 * 27 26 25 29 29 C 1.38231 * 119.99772 * 359.95781 * 28 27 26 30 30 H 1.08996 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46980 * 299.99902 * 1 2 3 32 32 H 1.09000 * 109.46926 * 59.99953 * 1 2 3 33 33 H 0.97003 * 119.99969 * 95.00321 * 4 2 1 34 34 H 1.08996 * 109.63545 * 248.52272 * 10 9 7 35 35 H 1.09000 * 109.62802 * 9.11122 * 10 9 7 36 36 H 1.09001 * 109.64614 * 294.08434 * 11 10 9 37 37 H 1.09001 * 109.41940 * 173.95105 * 11 10 9 38 38 H 1.09000 * 109.47800 * 54.30221 * 13 12 11 39 39 H 1.09008 * 109.46958 * 174.30245 * 13 12 11 40 40 H 0.96993 * 120.00026 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.49037 * 303.14416 * 22 12 11 42 42 H 1.08996 * 109.49141 * 183.06515 * 22 12 11 43 43 H 1.09002 * 109.63010 * 350.90002 * 23 9 7 44 44 H 1.09003 * 109.62769 * 111.48017 * 23 9 7 45 45 H 1.08005 * 119.99883 * 359.97438 * 25 24 2 46 46 H 1.08003 * 119.99911 * 180.22991 * 26 25 24 47 47 H 1.08001 * 119.99866 * 179.83310 * 27 26 25 48 48 H 1.08001 * 119.99780 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00201 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8581 1.1591 2.4117 7 6 2.6457 -0.7226 3.5773 8 8 2.8227 -1.9230 3.5552 9 7 2.8936 -0.0255 4.7038 10 6 3.4019 -0.6961 5.9101 11 6 4.6434 0.0670 6.3988 12 7 4.3025 1.4851 6.5742 13 6 5.4079 2.2180 7.2057 14 6 5.6072 1.7131 8.6115 15 1 4.9760 0.9260 8.9971 16 6 6.5952 2.2558 9.4054 17 7 7.3641 3.2138 8.9356 18 14 6.8427 1.6293 11.1478 19 1 7.1668 0.1807 11.1116 20 1 7.9601 2.3703 11.7862 21 1 5.5982 1.8388 11.9305 22 6 3.9222 2.1036 5.2972 23 6 2.6571 1.4250 4.7614 24 6 2.0324 -0.7104 -1.2304 25 6 2.0721 -2.0918 -1.2632 26 6 2.5292 -2.7435 -2.3933 27 6 2.9543 -2.0137 -3.4876 28 6 2.9196 -0.6322 -3.4530 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.6350 -0.6878 6.6845 35 1 3.6733 -1.7242 5.6706 36 1 5.4436 -0.0266 5.6647 37 1 4.9725 -0.3485 7.3513 38 1 6.3213 2.0636 6.6313 39 1 5.1705 3.2816 7.2319 40 1 8.0594 3.5953 9.4940 41 1 4.7326 1.9816 4.5784 42 1 3.7284 3.1651 5.4507 43 1 2.4356 1.7998 3.7621 44 1 1.8198 1.6333 5.4275 45 1 1.7434 -2.6619 -0.4067 46 1 2.5567 -3.8229 -2.4203 47 1 3.3140 -2.5229 -4.3696 48 1 3.2521 -0.0621 -4.3078 49 1 2.4319 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601531886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:20 Heat of formation + Delta-G solvation = -13.609722 kcal Electronic energy + Delta-G solvation = -29871.203358 eV Core-core repulsion = 25799.077895 eV Total energy + Delta-G solvation = -4072.125463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.10079 -39.90165 -38.70915 -37.59518 -36.12471 -34.36112 -32.40336 -32.11365 -31.28857 -30.75145 -29.61771 -28.46230 -26.04666 -24.95191 -23.89040 -23.27169 -22.79987 -21.86894 -21.01706 -20.59563 -19.48851 -17.96242 -17.19593 -16.90751 -16.38528 -16.23776 -15.86493 -15.65960 -15.19439 -14.78932 -14.72483 -14.59064 -14.44342 -14.13794 -13.90149 -13.80179 -13.76656 -13.50138 -13.45038 -12.94957 -12.70462 -12.58177 -12.38116 -12.05426 -11.96174 -11.49956 -11.43338 -11.25777 -11.23956 -10.98065 -10.79750 -10.72908 -10.60220 -10.54716 -9.89945 -9.68121 -9.37761 -9.34425 -9.18315 -8.95881 -8.58937 -8.44206 -7.30458 -6.04646 -4.06639 0.86043 0.97347 1.34962 2.24833 3.14582 3.32286 3.32710 3.36828 3.39514 3.47939 4.08631 4.24049 4.40682 4.42923 4.56959 4.70422 4.84309 4.85878 4.88710 5.05467 5.13238 5.24674 5.30701 5.36196 5.45019 5.46088 5.51698 5.58229 5.63329 5.69666 5.78944 5.81031 5.84870 5.93457 6.01936 6.09785 6.12737 6.30439 6.37097 6.43323 6.51579 6.54434 6.59474 6.87719 7.24087 7.29428 7.35948 7.65425 7.75855 7.94452 8.03544 8.14103 8.49759 9.00246 9.57714 11.06090 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.001959 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.237330 B =14287.734336 C =14328.886626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.181 3.819 3 H 0.103 0.897 4 N -0.697 5.697 5 C 0.515 3.485 6 O -0.506 6.506 7 C 0.502 3.498 8 O -0.536 6.536 9 N -0.568 5.568 10 C 0.110 3.890 11 C 0.052 3.948 12 N -0.537 5.537 13 C 0.193 3.807 14 C -0.510 4.510 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.042 3.958 23 C 0.059 3.941 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.106 4.106 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.099 0.901 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.149 0.851 44 H 0.074 0.926 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 -9.058 -24.918 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 H 0.121 0.879 4 N -0.351 5.351 5 C 0.298 3.702 6 O -0.383 6.383 7 C 0.284 3.716 8 O -0.414 6.414 9 N -0.300 5.300 10 C -0.012 4.012 11 C -0.077 4.077 12 N -0.263 5.263 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.088 4.088 23 C -0.062 4.062 24 C -0.094 4.094 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.124 4.124 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.092 0.908 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.207 -8.683 -24.499 29.154 hybrid contribution 1.159 -0.678 0.524 1.442 sum -12.047 -9.361 -23.974 28.417 Atomic orbital electron populations 1.22177 0.93502 1.02829 1.03184 1.19927 0.94676 0.96895 0.80814 0.87939 1.45982 1.65519 1.14997 1.08551 1.20364 0.78364 0.86805 0.84696 1.90375 1.49118 1.15422 1.83355 1.19858 0.80278 0.87138 0.84364 1.90730 1.52910 1.13896 1.83871 1.48185 1.60608 1.10329 1.10864 1.22158 0.97183 0.96875 0.84973 1.22412 0.93667 0.90385 1.01236 1.62121 1.42435 1.01494 1.20208 1.19723 0.85789 0.93819 0.93806 1.21108 1.15985 1.20326 0.97434 0.91857 1.25001 0.95814 0.95112 0.98688 1.69948 1.20534 1.26227 1.37012 0.86542 0.77669 0.78801 0.84284 1.20266 1.21383 1.20136 1.22416 0.95607 0.99223 0.91513 1.23387 0.98264 0.77469 1.07075 1.19877 1.00185 0.94000 0.95385 1.20976 0.99888 0.93742 0.98499 1.21163 0.98697 1.00138 0.93318 1.21225 0.99571 0.94279 0.98605 1.21170 0.99501 0.94682 0.98121 1.21023 0.98319 1.00080 0.92991 0.92011 0.91239 0.91029 0.75051 0.90208 0.89179 0.95680 0.88291 0.99145 0.94987 0.92831 0.95761 0.89956 0.83521 0.90807 0.85940 0.85753 0.85942 0.85755 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.46 37.16 0.35 -0.82 16 2 C 0.18 1.52 2.78 -69.08 -0.19 1.32 16 3 H 0.10 0.93 7.44 -51.93 -0.39 0.54 16 4 N -0.70 -7.02 5.02 -55.36 -0.28 -7.29 16 5 C 0.52 6.66 7.77 -11.58 -0.09 6.57 16 6 O -0.51 -7.07 12.70 5.50 0.07 -7.00 16 7 C 0.50 7.57 7.77 -11.59 -0.09 7.48 16 8 O -0.54 -8.77 15.95 5.49 0.09 -8.68 16 9 N -0.57 -9.05 3.00 -172.69 -0.52 -9.57 16 10 C 0.11 1.80 6.62 -3.37 -0.02 1.78 16 11 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 12 N -0.54 -11.50 4.62 -235.46 -1.09 -12.59 16 13 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 14 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 15 H 0.06 1.72 7.13 -52.48 -0.37 1.34 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 23 C 0.06 0.93 6.35 -3.60 -0.02 0.90 16 24 C -0.09 -0.73 4.96 -104.62 -0.52 -1.25 16 25 C -0.11 -0.83 9.06 -39.58 -0.36 -1.19 16 26 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 27 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 28 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 29 C -0.11 -0.75 9.67 -39.58 -0.38 -1.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 3.85 6.34 -40.82 -0.26 3.59 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.41 7.07 -51.93 -0.37 1.04 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 2.02 6.67 -51.93 -0.35 1.68 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.88 7.97 -51.92 -0.41 0.47 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 43 H 0.15 2.21 3.93 -56.51 -0.22 1.99 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.12 0.78 6.90 -52.48 -0.36 0.42 16 46 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 48 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 49 H 0.13 0.72 8.04 -52.48 -0.42 0.30 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -31.77 396.76 -10.35 -42.12 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.35 Total: 2.43 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.97 Total: 3.96 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.15 Total: -55.28 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.16 Total: -15.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.77 -10.35 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601531886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.514 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds