Wall clock time and date at job start Wed Apr 1 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 N 1.46498 * 109.46933 * 119.99854 * 2 1 3 5 5 C 1.34779 * 120.00154 * 274.99910 * 4 2 1 6 6 O 1.21348 * 119.99768 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00032 * 180.02562 * 5 4 2 8 8 O 1.21356 * 119.99981 * 353.51350 * 7 5 4 9 9 N 1.34774 * 120.00149 * 173.78998 * 7 5 4 10 10 C 1.47074 * 120.88489 * 180.82986 * 9 7 5 11 11 C 1.53700 * 108.27666 * 128.75482 * 10 9 7 12 12 N 1.46902 * 109.25471 * 54.08571 * 11 10 9 13 13 C 1.46896 * 110.99756 * 172.60834 * 12 11 10 14 14 C 1.50697 * 109.47435 * 294.29945 * 13 12 11 15 15 H 1.08007 * 119.99537 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00581 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00075 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47229 * 59.99877 * 18 16 14 20 20 H 1.48503 * 109.46843 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46945 * 299.99335 * 18 16 14 22 22 C 1.46903 * 111.26791 * 296.75697 * 12 11 10 23 23 C 1.47082 * 120.87694 * 1.11057 * 9 7 5 24 24 C 1.50699 * 109.47211 * 239.99794 * 2 1 3 25 25 C 1.38234 * 120.00046 * 279.72947 * 24 2 1 26 26 C 1.38234 * 119.99830 * 179.80810 * 25 24 2 27 27 C 1.38237 * 120.00027 * 0.40011 * 26 25 24 28 28 C 1.38236 * 120.00076 * 359.85063 * 27 26 25 29 29 C 1.38231 * 119.99772 * 359.95781 * 28 27 26 30 30 H 1.08996 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46980 * 299.99902 * 1 2 3 32 32 H 1.09000 * 109.46926 * 59.99953 * 1 2 3 33 33 H 0.97003 * 119.99969 * 95.00321 * 4 2 1 34 34 H 1.08996 * 109.63545 * 248.52272 * 10 9 7 35 35 H 1.09000 * 109.62802 * 9.11122 * 10 9 7 36 36 H 1.09001 * 109.64614 * 294.08434 * 11 10 9 37 37 H 1.09001 * 109.41940 * 173.95105 * 11 10 9 38 38 H 1.09000 * 109.47800 * 54.30221 * 13 12 11 39 39 H 1.09008 * 109.46958 * 174.30245 * 13 12 11 40 40 H 0.96993 * 120.00026 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.49037 * 303.14416 * 22 12 11 42 42 H 1.08996 * 109.49141 * 183.06515 * 22 12 11 43 43 H 1.09002 * 109.63010 * 350.90002 * 23 9 7 44 44 H 1.09003 * 109.62769 * 111.48017 * 23 9 7 45 45 H 1.08005 * 119.99883 * 359.97438 * 25 24 2 46 46 H 1.08003 * 119.99911 * 180.22991 * 26 25 24 47 47 H 1.08001 * 119.99866 * 179.83310 * 27 26 25 48 48 H 1.08001 * 119.99780 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00201 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8581 1.1591 2.4117 7 6 2.6457 -0.7226 3.5773 8 8 2.8227 -1.9230 3.5552 9 7 2.8936 -0.0255 4.7038 10 6 3.4019 -0.6961 5.9101 11 6 4.6434 0.0670 6.3988 12 7 4.3025 1.4851 6.5742 13 6 5.4079 2.2180 7.2057 14 6 5.6072 1.7131 8.6115 15 1 4.9760 0.9260 8.9971 16 6 6.5952 2.2558 9.4054 17 7 7.3641 3.2138 8.9356 18 14 6.8427 1.6293 11.1478 19 1 7.1668 0.1807 11.1116 20 1 7.9601 2.3703 11.7862 21 1 5.5982 1.8388 11.9305 22 6 3.9222 2.1036 5.2972 23 6 2.6571 1.4250 4.7614 24 6 2.0324 -0.7104 -1.2304 25 6 2.0721 -2.0918 -1.2632 26 6 2.5292 -2.7435 -2.3933 27 6 2.9543 -2.0137 -3.4876 28 6 2.9196 -0.6322 -3.4530 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.6350 -0.6878 6.6845 35 1 3.6733 -1.7242 5.6706 36 1 5.4436 -0.0266 5.6647 37 1 4.9725 -0.3485 7.3513 38 1 6.3213 2.0636 6.6313 39 1 5.1705 3.2816 7.2319 40 1 8.0594 3.5953 9.4940 41 1 4.7326 1.9816 4.5784 42 1 3.7284 3.1651 5.4507 43 1 2.4356 1.7998 3.7621 44 1 1.8198 1.6333 5.4275 45 1 1.7434 -2.6619 -0.4067 46 1 2.5567 -3.8229 -2.4203 47 1 3.3140 -2.5229 -4.3696 48 1 3.2521 -0.0621 -4.3078 49 1 2.4319 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601531886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:19 Heat of formation + Delta-G solvation = -34.227992 kcal Electronic energy + Delta-G solvation = -29872.097434 eV Core-core repulsion = 25799.077895 eV Total energy + Delta-G solvation = -4073.019539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.18166 -40.67030 -39.74040 -39.02412 -37.01789 -35.89362 -34.39330 -32.86883 -32.18825 -31.78826 -30.31201 -30.09372 -27.65733 -26.20609 -24.91015 -24.29000 -23.75368 -23.41595 -22.09268 -21.45932 -20.77519 -19.04936 -18.47198 -18.21646 -17.70131 -17.32478 -16.98614 -16.62337 -16.33474 -16.08002 -15.98329 -15.75925 -15.52414 -15.41978 -15.27669 -15.03706 -14.60822 -14.36399 -14.26223 -14.13667 -14.07210 -13.64295 -13.39000 -13.17328 -13.06460 -12.82904 -12.78573 -12.59651 -12.54953 -12.36146 -12.24462 -12.11408 -11.96055 -11.79867 -11.74806 -11.37410 -10.62616 -10.54337 -10.20888 -9.93866 -9.84362 -9.70531 -9.09633 -8.20740 -6.31214 0.22295 0.33928 0.47570 1.19365 1.42415 1.45524 1.53259 2.01451 2.32654 2.41216 2.85422 3.11167 3.15388 3.23880 3.49982 3.90869 3.91866 4.00869 4.09256 4.19404 4.22834 4.25290 4.28052 4.30407 4.39399 4.49405 4.58597 4.60080 4.65811 4.80638 4.81798 4.87689 4.89683 4.98897 5.02824 5.09116 5.12187 5.18253 5.22015 5.24913 5.36872 5.53713 5.61581 5.62036 5.62843 5.88520 6.01683 6.06885 6.12629 6.26177 6.54571 6.58363 6.81725 6.84077 7.38475 8.90258 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.001959 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.237330 B =14287.734336 C =14328.886626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 H 0.097 0.903 4 N -0.681 5.681 5 C 0.519 3.481 6 O -0.518 6.518 7 C 0.502 3.498 8 O -0.547 6.547 9 N -0.576 5.576 10 C 0.121 3.879 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.208 3.792 14 C -0.524 4.524 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.041 3.959 23 C 0.073 3.927 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.116 4.116 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.013 0.987 37 H 0.086 0.914 38 H -0.041 1.041 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.016 0.984 42 H 0.085 0.915 43 H 0.161 0.839 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 -10.379 -25.799 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.079 3.921 3 H 0.115 0.885 4 N -0.335 5.335 5 C 0.300 3.700 6 O -0.396 6.396 7 C 0.285 3.715 8 O -0.426 6.426 9 N -0.308 5.308 10 C -0.001 4.001 11 C -0.074 4.074 12 N -0.265 5.265 13 C 0.082 3.918 14 C -0.562 4.562 15 H 0.086 0.914 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.088 4.088 23 C -0.048 4.048 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.135 4.135 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.031 0.969 37 H 0.105 0.895 38 H -0.024 1.024 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.103 0.897 43 H 0.176 0.824 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.158 0.842 47 H 0.159 0.841 48 H 0.160 0.840 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.392 -10.036 -25.424 30.891 hybrid contribution 1.527 -0.298 0.652 1.687 sum -12.865 -10.333 -24.772 29.765 Atomic orbital electron populations 1.22134 0.92549 1.03210 1.03267 1.20028 0.95350 0.96460 0.80280 0.88528 1.45991 1.64148 1.15149 1.08170 1.19951 0.78717 0.86584 0.84741 1.90347 1.50131 1.15755 1.83399 1.20218 0.79604 0.87029 0.84628 1.90720 1.53290 1.14498 1.84117 1.48224 1.61055 1.10405 1.11131 1.21991 0.95844 0.96663 0.85586 1.22382 0.95117 0.89458 1.00428 1.62060 1.40154 1.02286 1.21994 1.19381 0.85875 0.93001 0.93545 1.21428 1.16159 1.20410 0.98221 0.91438 1.25945 0.95404 0.95181 1.03247 1.70085 1.21171 1.27510 1.38748 0.85404 0.77793 0.78535 0.78694 1.19162 1.21076 1.19204 1.22512 0.96678 0.99727 0.89885 1.23328 0.96573 0.77185 1.07668 1.19843 1.01135 0.94258 0.95225 1.21133 1.00214 0.93736 0.99121 1.21431 0.98435 1.01130 0.93208 1.21540 0.99021 0.94460 0.99193 1.21455 0.99133 0.95079 0.98497 1.21236 0.98328 1.00775 0.93127 0.91474 0.92453 0.89598 0.74500 0.89191 0.88180 0.96919 0.89526 1.02362 0.97373 0.92697 0.96617 0.89689 0.82351 0.90092 0.85373 0.84231 0.84079 0.84004 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.46 71.98 0.68 -1.37 16 2 C 0.18 2.82 2.78 44.25 0.12 2.95 16 3 H 0.10 1.65 7.44 -2.39 -0.02 1.63 16 4 N -0.68 -12.87 5.02 -447.43 -2.24 -15.12 16 5 C 0.52 12.79 7.77 87.27 0.68 13.46 16 6 O -0.52 -13.87 12.70 -3.24 -0.04 -13.91 16 7 C 0.50 14.55 7.77 87.27 0.68 15.23 16 8 O -0.55 -17.17 15.95 -3.26 -0.05 -17.22 16 9 N -0.58 -17.77 3.00 -818.63 -2.46 -20.23 16 10 C 0.12 3.86 6.62 86.51 0.57 4.43 16 11 C 0.06 2.17 5.47 86.54 0.47 2.64 16 12 N -0.54 -23.53 4.62 -898.87 -4.15 -27.68 16 13 C 0.21 11.18 4.72 85.56 0.40 11.59 16 14 C -0.52 -29.49 8.41 25.60 0.22 -29.27 16 15 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 18 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.04 1.51 5.62 86.38 0.49 2.00 16 23 C 0.07 2.23 6.35 86.35 0.55 2.78 16 24 C -0.10 -1.47 4.96 -19.87 -0.10 -1.57 16 25 C -0.12 -1.64 9.06 22.27 0.20 -1.44 16 26 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 27 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 28 C -0.12 -1.39 10.05 22.27 0.22 -1.16 16 29 C -0.12 -1.49 9.67 22.27 0.22 -1.28 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.42 7.21 6.34 -92.71 -0.59 6.63 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.10 3.01 7.07 -2.39 -0.02 2.99 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 3.59 6.67 -2.39 -0.02 3.57 16 38 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 39 H 0.01 0.47 7.97 -2.38 -0.02 0.45 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 3.06 7.99 -2.39 -0.02 3.04 16 43 H 0.16 4.60 3.93 -74.95 -0.29 4.30 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.13 1.45 6.90 -2.91 -0.02 1.43 16 46 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 47 H 0.14 0.92 8.06 -2.91 -0.02 0.89 16 48 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.14 1.37 8.04 -2.91 -0.02 1.35 16 Total: -1.00 -68.20 396.76 -0.24 -68.43 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.09 Total: 18.64 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.31 Total: 17.13 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -8.57 Total: -119.19 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.09 Total: -31.13 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.20 -0.24 -68.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601531886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.204 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds