Wall clock time and date at job start Wed Apr 1 2020 04:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47697 * 2 1 4 4 N 1.46898 * 109.47413 * 120.00535 * 2 1 3 5 5 C 1.46900 * 110.99764 * 274.99859 * 4 2 1 6 6 C 1.53007 * 109.47502 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.46521 * 59.99392 * 6 5 4 8 8 O 1.42901 * 109.46528 * 299.99896 * 6 5 4 9 9 C 1.52993 * 109.47423 * 179.97438 * 6 5 4 10 10 O 1.42904 * 109.47131 * 184.99678 * 9 6 5 11 11 C 1.35680 * 116.99780 * 180.02562 * 10 9 6 12 12 C 1.39309 * 119.81852 * 359.72720 * 11 10 9 13 13 C 1.36440 * 120.18375 * 179.76251 * 12 11 10 14 14 C 1.40830 * 119.80934 * 0.51097 * 13 12 11 15 15 C 1.41214 * 120.18030 * 179.72182 * 14 13 12 16 16 H 1.08000 * 120.00452 * 155.16781 * 15 14 13 17 17 C 1.39890 * 119.99527 * 335.16566 * 15 14 13 18 18 N 1.30873 * 120.00555 * 342.15559 * 17 15 14 19 19 Si 1.86808 * 119.99516 * 162.16019 * 17 15 14 20 20 H 1.48499 * 109.47284 * 94.65719 * 19 17 15 21 21 H 1.48509 * 109.46872 * 214.65607 * 19 17 15 22 22 H 1.48492 * 109.47136 * 334.65378 * 19 17 15 23 23 C 1.40835 * 119.64271 * 359.74377 * 14 13 12 24 24 C 1.36437 * 119.81120 * 0.02562 * 23 14 13 25 25 C 1.50707 * 109.46921 * 240.00063 * 2 1 3 26 26 C 1.39867 * 126.04124 * 279.97475 * 25 2 1 27 27 N 1.30831 * 108.20247 * 180.02562 * 26 25 2 28 28 N 1.40080 * 108.20733 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.04028 * 179.97438 * 28 27 26 30 30 C 1.34949 * 107.92603 * 359.97438 * 28 27 26 31 31 H 1.09008 * 109.46954 * 299.99892 * 1 2 3 32 32 H 1.08997 * 109.47162 * 59.99567 * 1 2 3 33 33 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 34 34 H 1.00899 * 111.00326 * 38.95077 * 4 2 1 35 35 H 1.09001 * 109.47372 * 299.99708 * 5 4 2 36 36 H 1.08994 * 109.47561 * 59.99627 * 5 4 2 37 37 H 0.96691 * 114.00384 * 299.99784 * 8 6 5 38 38 H 1.09000 * 109.47580 * 304.99994 * 9 6 5 39 39 H 1.09004 * 109.47152 * 64.99583 * 9 6 5 40 40 H 1.08001 * 119.90686 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.09544 * 180.25505 * 13 12 11 42 42 H 0.96996 * 120.00398 * 179.97438 * 18 17 15 43 43 H 1.08007 * 120.09309 * 179.97438 * 23 14 13 44 44 H 1.08007 * 119.90681 * 179.97438 * 24 23 14 45 45 H 1.08004 * 125.89598 * 359.97438 * 26 25 2 46 46 H 1.08997 * 109.47610 * 270.00371 * 29 28 27 47 47 H 1.09008 * 109.46831 * 29.99801 * 29 28 27 48 48 H 1.08999 * 109.47283 * 149.99649 * 29 28 27 49 49 H 1.07995 * 126.12925 * 180.26875 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5952 -0.5333 3.5745 7 1 3.5904 -0.9274 3.3690 8 8 1.7079 -1.6127 3.8740 9 6 2.6612 0.4198 4.7694 10 8 3.2485 -0.2540 5.8843 11 6 3.3808 0.4558 7.0331 12 6 2.9562 1.7817 7.0809 13 6 3.0812 2.5010 8.2335 14 6 3.6514 1.9025 9.3738 15 6 3.7900 2.6415 10.5691 16 1 3.8361 2.1290 11.5186 17 6 3.8676 4.0375 10.5233 18 7 4.1618 4.6401 9.3994 19 14 3.5514 5.0416 12.0665 20 1 4.8426 5.3384 12.7372 21 1 2.8798 6.3144 11.6999 22 1 2.6802 4.2702 12.9891 23 6 4.0830 0.5632 9.3153 24 6 3.9464 -0.1435 8.1563 25 6 2.0323 -0.7104 -1.2305 26 6 2.1218 -2.0956 -1.4021 27 7 2.6029 -2.3293 -2.5961 28 7 2.8356 -1.0983 -3.2229 29 6 3.3730 -0.9060 -4.5721 30 6 2.4772 -0.1208 -2.3643 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.4496 -1.4980 1.4099 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 0.8021 -1.3352 4.0675 38 1 3.2672 1.2876 4.5090 39 1 1.6542 0.7452 5.0307 40 1 2.5228 2.2403 6.2043 41 1 2.7478 3.5276 8.2702 42 1 4.2152 5.6080 9.3676 43 1 4.5216 0.0972 10.1854 44 1 4.2772 -1.1706 8.1097 45 1 1.8429 -2.8432 -0.6742 46 1 4.4602 -0.8442 -4.5248 47 1 3.0841 -1.7477 -5.2016 48 1 2.9746 0.0167 -4.9938 49 1 2.5315 0.9416 -2.5504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612514840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:42 Heat of formation + Delta-G solvation = 9.530709 kcal Electronic energy + Delta-G solvation = -28527.735118 eV Core-core repulsion = 24456.613099 eV Total energy + Delta-G solvation = -4071.122019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45185 -39.11736 -38.03006 -36.58366 -35.82586 -33.40366 -33.33142 -31.86645 -30.13464 -29.61954 -29.24754 -28.47205 -26.94366 -25.31630 -24.36753 -22.85254 -22.02071 -21.18794 -20.87929 -20.38412 -20.07409 -17.43877 -17.32047 -16.94098 -16.51023 -16.32458 -15.76203 -15.36516 -15.14667 -15.07368 -14.63999 -14.47178 -14.08284 -13.92476 -13.74512 -13.44953 -13.35664 -13.21325 -12.87477 -12.83335 -12.67005 -12.40316 -12.13327 -11.99251 -11.90441 -11.77545 -11.70143 -11.41465 -11.11690 -11.02775 -10.81863 -10.71390 -10.56207 -10.04379 -9.86745 -9.78764 -9.65001 -9.35703 -9.00783 -8.72766 -8.49830 -7.64835 -7.00002 -6.72700 -4.24639 1.63719 2.25930 2.59143 2.77167 2.97108 3.07848 3.12296 3.21885 3.60800 3.95222 4.16759 4.36039 4.44676 4.55104 4.62244 4.72094 4.75205 4.86562 4.93895 4.97232 5.00410 5.07834 5.08743 5.20291 5.35279 5.38367 5.46188 5.51633 5.65210 5.67244 5.69830 5.78329 5.92443 6.10869 6.12756 6.29785 6.42752 6.68780 6.72755 6.83815 6.90033 7.07282 7.21262 7.28487 7.41716 7.47650 7.56682 7.65739 7.91089 8.00801 8.16271 8.45689 8.65885 8.90683 9.00022 10.22214 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.001568 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.353352 B =17848.588119 C =18351.199902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.162 3.838 3 H 0.081 0.919 4 N -0.674 5.674 5 C 0.033 3.967 6 C 0.113 3.887 7 H 0.114 0.886 8 O -0.550 6.550 9 C 0.039 3.961 10 O -0.318 6.318 11 C -0.009 4.009 12 C -0.175 4.175 13 C -0.134 4.134 14 C 0.087 3.913 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.801 5.801 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.195 4.195 24 C -0.112 4.112 25 C -0.216 4.216 26 C 0.070 3.930 27 N -0.303 5.303 28 N -0.380 5.380 29 C 0.103 3.897 30 C 0.053 3.947 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.349 0.651 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.368 0.632 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.180 0.820 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -4.288 -24.123 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.051 3.949 3 H 0.099 0.901 4 N -0.306 5.306 5 C -0.097 4.097 6 C 0.053 3.947 7 H 0.132 0.868 8 O -0.354 6.354 9 C -0.038 4.038 10 O -0.233 6.233 11 C -0.052 4.052 12 C -0.194 4.194 13 C -0.154 4.154 14 C 0.084 3.916 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.427 5.427 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.215 4.215 24 C -0.131 4.131 25 C -0.228 4.228 26 C -0.117 4.117 27 N -0.124 5.124 28 N -0.162 5.162 29 C -0.038 4.038 30 C -0.093 4.093 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.215 0.785 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.197 0.803 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.929 -5.389 -25.510 26.535 hybrid contribution -1.727 2.131 1.411 3.085 sum -6.657 -3.259 -24.099 25.213 Atomic orbital electron populations 1.22487 0.96732 1.02371 1.02001 1.19677 0.91872 0.96461 0.86906 0.90115 1.60343 1.58024 1.09553 1.02675 1.22546 1.00189 0.95939 0.91033 1.21960 0.95388 0.87283 0.90039 0.86850 1.86647 1.23088 1.33794 1.91875 1.23098 0.97982 0.95578 0.87145 1.85871 1.78946 1.39873 1.18657 1.18604 1.09050 0.91454 0.86116 1.20592 1.06275 0.93635 0.98876 1.20921 1.01732 1.00035 0.92667 1.17597 0.89539 0.91138 0.93289 1.19464 1.44866 0.90938 0.94080 0.90505 1.25867 0.92259 0.98589 0.97413 1.69837 1.34447 1.11020 1.27443 0.86346 0.79418 0.79112 0.82106 1.19644 1.20158 1.18477 1.20611 1.07853 0.96519 0.96519 1.19625 1.03102 0.98616 0.91764 1.19890 1.12695 0.93510 0.96710 1.23659 0.97965 0.96053 0.94007 1.77370 1.22508 1.03284 1.09241 1.48411 1.50300 1.03977 1.13545 1.21820 0.99455 1.03465 0.79107 1.22225 1.00747 0.95291 0.91063 0.92570 0.92120 0.92216 0.83148 0.89791 0.94636 0.78521 0.92295 0.93080 0.88928 0.86213 0.91051 0.88198 0.88457 0.80257 0.90812 0.89428 0.89635 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.14 37.15 0.34 -0.86 16 2 C 0.16 1.27 3.02 -68.87 -0.21 1.07 16 3 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 4 N -0.67 -6.12 5.99 -107.95 -0.65 -6.77 16 5 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16 6 C 0.11 1.40 3.52 -26.73 -0.09 1.30 16 7 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 8 O -0.55 -6.95 12.64 -40.06 -0.51 -7.45 16 9 C 0.04 0.60 4.37 37.15 0.16 0.76 16 10 O -0.32 -6.52 10.09 -23.57 -0.24 -6.76 16 11 C -0.01 -0.21 6.71 -38.79 -0.26 -0.47 16 12 C -0.17 -4.09 8.96 -39.83 -0.36 -4.44 16 13 C -0.13 -3.48 8.64 -39.25 -0.34 -3.81 16 14 C 0.09 2.32 5.57 -106.81 -0.59 1.73 16 15 C -0.46 -12.33 9.04 -37.83 -0.34 -12.67 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 18 N -0.80 -20.72 10.97 55.54 0.61 -20.11 16 19 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 24 C -0.11 -2.66 9.92 -39.83 -0.40 -3.05 16 25 C -0.22 -1.93 5.09 -105.05 -0.54 -2.47 16 26 C 0.07 0.71 11.66 -17.37 -0.20 0.50 16 27 N -0.30 -3.43 12.57 30.62 0.39 -3.05 16 28 N -0.38 -3.32 4.01 -68.16 -0.27 -3.60 16 29 C 0.10 0.47 11.47 59.85 0.69 1.15 16 30 C 0.05 0.42 11.40 -17.22 -0.20 0.22 16 31 H 0.06 0.37 7.45 -51.92 -0.39 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.35 3.09 7.86 -39.29 -0.31 2.78 16 35 H 0.08 0.78 8.06 -51.93 -0.42 0.37 16 36 H 0.04 0.30 7.44 -51.93 -0.39 -0.09 16 37 H 0.37 3.40 9.05 45.56 0.41 3.81 16 38 H 0.06 0.89 7.64 -51.93 -0.40 0.50 16 39 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 40 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 41 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 42 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 43 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 44 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 408.44 15.07 6.16 6.16 Total: -1.00 -32.46 408.44 -9.09 -41.55 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.72 Total: 10.61 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.83 Total: -24.20 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.07 Total: -33.52 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.74 Total: -14.21 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.46 -9.09 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612514840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds