Wall clock time and date at job start Wed Apr 1 2020 04:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47697 * 2 1 4 4 N 1.46898 * 109.47413 * 120.00535 * 2 1 3 5 5 C 1.46900 * 110.99764 * 274.99859 * 4 2 1 6 6 C 1.53007 * 109.47502 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.46521 * 59.99392 * 6 5 4 8 8 O 1.42901 * 109.46528 * 299.99896 * 6 5 4 9 9 C 1.52993 * 109.47423 * 179.97438 * 6 5 4 10 10 O 1.42904 * 109.47131 * 184.99678 * 9 6 5 11 11 C 1.35680 * 116.99780 * 180.02562 * 10 9 6 12 12 C 1.39309 * 119.81852 * 359.72720 * 11 10 9 13 13 C 1.36440 * 120.18375 * 179.76251 * 12 11 10 14 14 C 1.40830 * 119.80934 * 0.51097 * 13 12 11 15 15 C 1.41214 * 120.18030 * 179.72182 * 14 13 12 16 16 H 1.08000 * 120.00452 * 155.16781 * 15 14 13 17 17 C 1.39890 * 119.99527 * 335.16566 * 15 14 13 18 18 N 1.30873 * 120.00555 * 342.15559 * 17 15 14 19 19 Si 1.86808 * 119.99516 * 162.16019 * 17 15 14 20 20 H 1.48499 * 109.47284 * 94.65719 * 19 17 15 21 21 H 1.48509 * 109.46872 * 214.65607 * 19 17 15 22 22 H 1.48492 * 109.47136 * 334.65378 * 19 17 15 23 23 C 1.40835 * 119.64271 * 359.74377 * 14 13 12 24 24 C 1.36437 * 119.81120 * 0.02562 * 23 14 13 25 25 C 1.50707 * 109.46921 * 240.00063 * 2 1 3 26 26 C 1.39867 * 126.04124 * 279.97475 * 25 2 1 27 27 N 1.30831 * 108.20247 * 180.02562 * 26 25 2 28 28 N 1.40080 * 108.20733 * 0.02562 * 27 26 25 29 29 C 1.46499 * 126.04028 * 179.97438 * 28 27 26 30 30 C 1.34949 * 107.92603 * 359.97438 * 28 27 26 31 31 H 1.09008 * 109.46954 * 299.99892 * 1 2 3 32 32 H 1.08997 * 109.47162 * 59.99567 * 1 2 3 33 33 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 34 34 H 1.00899 * 111.00326 * 38.95077 * 4 2 1 35 35 H 1.09001 * 109.47372 * 299.99708 * 5 4 2 36 36 H 1.08994 * 109.47561 * 59.99627 * 5 4 2 37 37 H 0.96691 * 114.00384 * 299.99784 * 8 6 5 38 38 H 1.09000 * 109.47580 * 304.99994 * 9 6 5 39 39 H 1.09004 * 109.47152 * 64.99583 * 9 6 5 40 40 H 1.08001 * 119.90686 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.09544 * 180.25505 * 13 12 11 42 42 H 0.96996 * 120.00398 * 179.97438 * 18 17 15 43 43 H 1.08007 * 120.09309 * 179.97438 * 23 14 13 44 44 H 1.08007 * 119.90681 * 179.97438 * 24 23 14 45 45 H 1.08004 * 125.89598 * 359.97438 * 26 25 2 46 46 H 1.08997 * 109.47610 * 270.00371 * 29 28 27 47 47 H 1.09008 * 109.46831 * 29.99801 * 29 28 27 48 48 H 1.08999 * 109.47283 * 149.99649 * 29 28 27 49 49 H 1.07995 * 126.12925 * 180.26875 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5952 -0.5333 3.5745 7 1 3.5904 -0.9274 3.3690 8 8 1.7079 -1.6127 3.8740 9 6 2.6612 0.4198 4.7694 10 8 3.2485 -0.2540 5.8843 11 6 3.3808 0.4558 7.0331 12 6 2.9562 1.7817 7.0809 13 6 3.0812 2.5010 8.2335 14 6 3.6514 1.9025 9.3738 15 6 3.7900 2.6415 10.5691 16 1 3.8361 2.1290 11.5186 17 6 3.8676 4.0375 10.5233 18 7 4.1618 4.6401 9.3994 19 14 3.5514 5.0416 12.0665 20 1 4.8426 5.3384 12.7372 21 1 2.8798 6.3144 11.6999 22 1 2.6802 4.2702 12.9891 23 6 4.0830 0.5632 9.3153 24 6 3.9464 -0.1435 8.1563 25 6 2.0323 -0.7104 -1.2305 26 6 2.1218 -2.0956 -1.4021 27 7 2.6029 -2.3293 -2.5961 28 7 2.8356 -1.0983 -3.2229 29 6 3.3730 -0.9060 -4.5721 30 6 2.4772 -0.1208 -2.3643 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.4496 -1.4980 1.4099 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 0.8021 -1.3352 4.0675 38 1 3.2672 1.2876 4.5090 39 1 1.6542 0.7452 5.0307 40 1 2.5228 2.2403 6.2043 41 1 2.7478 3.5276 8.2702 42 1 4.2152 5.6080 9.3676 43 1 4.5216 0.0972 10.1854 44 1 4.2772 -1.1706 8.1097 45 1 1.8429 -2.8432 -0.6742 46 1 4.4602 -0.8442 -4.5248 47 1 3.0841 -1.7477 -5.2016 48 1 2.9746 0.0167 -4.9938 49 1 2.5315 0.9416 -2.5504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612514840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:41 Heat of formation + Delta-G solvation = -12.564568 kcal Electronic energy + Delta-G solvation = -28528.693241 eV Core-core repulsion = 24456.613099 eV Total energy + Delta-G solvation = -4072.080142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.07764 -40.63721 -39.19549 -37.96382 -36.90602 -35.19199 -33.98461 -32.66842 -31.55883 -31.31615 -30.49266 -29.44821 -27.45467 -26.84419 -25.69012 -23.61314 -23.21507 -22.57873 -22.01636 -21.76332 -20.74218 -19.26068 -18.68528 -17.91910 -17.62613 -17.41912 -16.90747 -16.36533 -16.14030 -15.99105 -15.77287 -15.57386 -15.39095 -15.14295 -14.79717 -14.62440 -14.20492 -14.18978 -13.96694 -13.76963 -13.63635 -13.45540 -13.38069 -13.26870 -13.19167 -12.86511 -12.73956 -12.67816 -12.46487 -12.32399 -12.29193 -11.87533 -11.68572 -11.57221 -11.38397 -11.20939 -10.95479 -10.85246 -10.30312 -9.55813 -9.37373 -9.13596 -8.89376 -8.59345 -6.21537 0.94858 1.02284 1.05394 1.40495 1.50162 1.56452 1.76234 1.91028 2.23793 2.44779 2.73307 3.33201 3.52488 3.71406 3.74927 4.03232 4.06241 4.06967 4.08844 4.24874 4.31090 4.35830 4.38636 4.41065 4.42469 4.45612 4.50706 4.51974 4.70931 4.76497 4.83061 4.90046 4.90337 5.00179 5.04901 5.16269 5.18161 5.21497 5.34540 5.37963 5.53714 5.67286 5.76985 5.98227 6.07057 6.11633 6.24348 6.25766 6.53396 6.57560 6.79970 6.81792 6.85792 6.96222 7.11879 8.37739 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.001568 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.353352 B =17848.588119 C =18351.199902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.088 0.912 4 N -0.684 5.684 5 C 0.044 3.956 6 C 0.125 3.875 7 H 0.095 0.905 8 O -0.564 6.564 9 C 0.031 3.969 10 O -0.329 6.329 11 C 0.000 4.000 12 C -0.175 4.175 13 C -0.153 4.153 14 C 0.053 3.947 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.832 5.832 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.206 4.206 24 C -0.124 4.124 25 C -0.231 4.231 26 C 0.055 3.945 27 N -0.345 5.345 28 N -0.384 5.384 29 C 0.094 3.906 30 C 0.056 3.944 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.349 0.651 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.384 0.616 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.183 0.817 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 -3.073 -25.296 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.106 0.894 4 N -0.316 5.316 5 C -0.085 4.085 6 C 0.066 3.934 7 H 0.113 0.887 8 O -0.371 6.371 9 C -0.046 4.046 10 O -0.245 6.245 11 C -0.044 4.044 12 C -0.194 4.194 13 C -0.173 4.173 14 C 0.051 3.949 15 C -0.530 4.530 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.459 5.459 19 Si 0.801 3.199 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.225 4.225 24 C -0.142 4.142 25 C -0.243 4.243 26 C -0.130 4.130 27 N -0.167 5.167 28 N -0.166 5.166 29 C -0.046 4.046 30 C -0.091 4.091 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.200 0.800 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.134 0.866 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.705 -4.193 -26.716 27.639 hybrid contribution -1.478 1.652 1.581 2.723 sum -7.183 -2.541 -25.136 26.265 Atomic orbital electron populations 1.22413 0.95878 1.02218 1.02400 1.19660 0.92436 0.96363 0.85850 0.89411 1.60306 1.58602 1.09737 1.02934 1.22392 1.00995 0.95447 0.89702 1.21798 0.94948 0.86770 0.89927 0.88717 1.86614 1.24256 1.34216 1.91967 1.23481 0.98314 0.96451 0.86310 1.85871 1.79264 1.40501 1.18882 1.18722 1.07362 0.91334 0.86992 1.20812 1.05794 0.93733 0.99023 1.20906 1.02908 0.99851 0.93630 1.17962 0.90636 0.92218 0.94073 1.19710 1.46987 0.92268 0.94066 0.90717 1.26701 0.91271 0.99098 1.00802 1.69881 1.34736 1.11782 1.29460 0.85221 0.79412 0.77460 0.77766 1.18906 1.19023 1.18352 1.20797 1.07968 0.96247 0.97499 1.19897 1.03103 0.99534 0.91715 1.20090 1.13523 0.93068 0.97668 1.23841 0.98127 0.97039 0.93977 1.77288 1.24056 1.05281 1.10117 1.48757 1.49813 1.03390 1.14678 1.22138 1.00003 1.04971 0.77493 1.22792 0.99225 0.96610 0.90442 0.92164 0.91632 0.92672 0.83129 0.89411 0.92904 0.76731 0.91833 0.91718 0.86153 0.87482 0.90238 0.87376 0.86599 0.80050 0.90126 0.89479 0.86614 0.77940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.14 71.98 0.66 -1.29 16 2 C 0.17 2.30 3.02 44.17 0.13 2.43 16 3 H 0.09 1.09 7.79 -2.39 -0.02 1.07 16 4 N -0.68 -11.28 5.99 -495.45 -2.97 -14.25 16 5 C 0.04 0.73 5.19 86.31 0.45 1.18 16 6 C 0.13 2.90 3.52 30.59 0.11 3.00 16 7 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 8 O -0.56 -13.34 12.64 -144.37 -1.82 -15.16 16 9 C 0.03 0.89 4.37 71.98 0.31 1.20 16 10 O -0.33 -13.08 10.09 -85.36 -0.86 -13.94 16 11 C 0.00 -0.01 6.71 22.79 0.15 0.14 16 12 C -0.17 -8.08 8.96 22.11 0.20 -7.88 16 13 C -0.15 -8.07 8.64 22.48 0.19 -7.88 16 14 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 15 C -0.50 -27.26 9.04 23.40 0.21 -27.05 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 17 C 0.04 1.77 5.13 85.24 0.44 2.21 16 18 N -0.83 -43.48 10.97 21.82 0.24 -43.24 16 19 Si 0.98 38.22 29.60 68.60 2.03 40.25 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.21 -10.39 9.74 22.48 0.22 -10.17 16 24 C -0.12 -5.83 9.92 22.11 0.22 -5.61 16 25 C -0.23 -3.83 5.09 -20.14 -0.10 -3.94 16 26 C 0.06 1.12 11.66 85.24 0.99 2.12 16 27 N -0.35 -7.81 12.57 -57.03 -0.72 -8.53 16 28 N -0.38 -6.23 4.01 -369.56 -1.48 -7.71 16 29 C 0.09 0.69 11.47 127.77 1.47 2.16 16 30 C 0.06 0.78 11.40 83.54 0.95 1.73 16 31 H 0.06 0.64 7.45 -2.38 -0.02 0.62 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.13 -2.39 -0.02 0.66 16 34 H 0.35 5.73 7.86 -89.69 -0.71 5.02 16 35 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 36 H 0.05 0.71 7.44 -2.39 -0.02 0.69 16 37 H 0.38 6.28 9.05 -74.06 -0.67 5.61 16 38 H 0.06 1.79 7.64 -2.39 -0.02 1.77 16 39 H 0.06 1.70 7.66 -2.38 -0.02 1.69 16 40 H 0.12 4.74 6.27 -2.91 -0.02 4.72 16 41 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 42 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 43 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 44 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 45 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 46 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -71.01 408.44 0.50 -70.51 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.40 Total: 36.91 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 6.49 Total: -44.84 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -4.93 Total: -73.73 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -2.69 Total: -29.10 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -71.01 0.50 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612514840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.943 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds