Wall clock time and date at job start Wed Apr 1 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46932 * 2 1 4 4 N 1.46903 * 109.47331 * 240.00248 * 2 1 3 5 5 C 1.46902 * 111.00050 * 84.99735 * 4 2 1 6 6 C 1.50696 * 109.47328 * 180.02562 * 5 4 2 7 7 O 1.21285 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00257 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00238 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47298 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00103 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99869 * 180.02562 * 10 9 8 13 13 N 1.31505 * 120.00071 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99622 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47309 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46799 * 119.99815 * 14 12 10 17 17 H 1.48496 * 109.46814 * 239.99690 * 14 12 10 18 18 C 1.50702 * 109.47272 * 119.99852 * 2 1 3 19 19 C 1.38283 * 119.93189 * 259.99936 * 18 2 1 20 20 C 1.38111 * 120.06984 * 180.02562 * 19 18 2 21 21 C 1.38877 * 119.92825 * 0.02562 * 20 19 18 22 22 N 1.39920 * 120.06746 * 179.97438 * 21 20 19 23 23 C 1.34778 * 120.00290 * 35.08810 * 22 21 20 24 24 O 1.21289 * 119.99970 * 355.37164 * 23 22 21 25 25 C 1.50700 * 120.00224 * 175.37784 * 23 22 21 26 26 C 1.53001 * 117.49474 * 248.62307 * 25 23 22 27 27 C 1.52996 * 117.50036 * 179.97438 * 25 23 22 28 28 C 1.38871 * 119.86126 * 0.25753 * 21 20 19 29 29 C 1.38117 * 119.92612 * 359.46875 * 28 21 20 30 30 H 1.09001 * 109.47424 * 60.00391 * 1 2 3 31 31 H 1.09009 * 109.46932 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47427 * 299.99263 * 1 2 3 33 33 H 1.00900 * 110.99850 * 208.94934 * 4 2 1 34 34 H 1.09006 * 109.47153 * 300.00420 * 5 4 2 35 35 H 1.08995 * 109.46923 * 59.99844 * 5 4 2 36 36 H 0.97003 * 119.99843 * 359.97438 * 8 6 5 37 37 H 1.09006 * 109.47045 * 299.99872 * 9 8 6 38 38 H 1.08995 * 109.47567 * 59.99624 * 9 8 6 39 39 H 0.97002 * 120.00215 * 180.02562 * 13 12 10 40 40 H 1.07993 * 119.96104 * 0.02904 * 19 18 2 41 41 H 1.07995 * 120.03532 * 180.02562 * 20 19 18 42 42 H 0.97007 * 119.99964 * 215.09107 * 22 21 20 43 43 H 1.09003 * 115.54914 * 34.32805 * 25 23 22 44 44 H 1.08996 * 117.50256 * 359.97438 * 26 25 23 45 45 H 1.09006 * 117.49363 * 145.02385 * 26 25 23 46 46 H 1.09000 * 117.50084 * 214.97959 * 27 25 23 47 47 H 1.09005 * 117.49700 * 359.97324 * 27 25 23 48 48 H 1.07998 * 120.03666 * 179.74509 * 28 21 20 49 49 H 1.07994 * 119.96184 * 180.28122 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5561 7 8 2.8669 -1.6987 -3.4705 8 7 2.7282 0.1207 -4.7325 9 6 3.2185 -0.6030 -5.9081 10 6 3.2830 0.3358 -7.0852 11 1 2.9879 1.3682 -6.9693 12 6 3.7178 -0.1236 -8.3103 13 7 4.0767 -1.3808 -8.4516 14 14 3.7971 1.0400 -9.7695 15 1 3.3420 2.3903 -9.3513 16 1 5.1951 1.1195 -10.2639 17 1 2.9166 0.5351 -10.8535 18 6 2.0323 -0.7104 1.2305 19 6 2.4586 0.0211 2.3238 20 6 2.9200 -0.6269 3.4528 21 6 2.9562 -2.0148 3.4890 22 7 3.4236 -2.6743 4.6310 23 6 3.1819 -2.1596 5.8529 24 8 2.6332 -1.0832 5.9598 25 6 3.5935 -2.9213 7.0864 26 6 2.4810 -3.4913 7.9686 27 6 3.2920 -2.2835 8.4440 28 6 2.5329 -2.7464 2.3871 29 6 2.0673 -2.0924 1.2632 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.9174 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7587 1.0463 -2.1182 36 1 2.5043 1.0620 -4.8010 37 1 4.2136 -0.9978 -5.7028 38 1 2.5413 -1.4259 -6.1368 39 1 4.3830 -1.7039 -9.3134 40 1 2.4305 1.1003 2.2949 41 1 3.2523 -0.0551 4.3065 42 1 3.9217 -3.5021 4.5433 43 1 4.5119 -3.5015 6.9960 44 1 1.4515 -3.3151 7.6571 45 1 2.6674 -4.4470 8.4588 46 1 4.0115 -2.4448 9.2468 47 1 2.7962 -1.3127 8.4450 48 1 2.5637 -3.8257 2.4106 49 1 1.7338 -2.6609 0.4078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775107744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:18 Heat of formation + Delta-G solvation = -22.068699 kcal Electronic energy + Delta-G solvation = -28259.243469 eV Core-core repulsion = 24186.751197 eV Total energy + Delta-G solvation = -4072.492272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02278 -39.51896 -38.73402 -37.08759 -36.19637 -34.75423 -34.10208 -32.32218 -31.38515 -31.06464 -28.86419 -27.75346 -25.87773 -25.15414 -23.31212 -22.98392 -22.77423 -22.07013 -20.77766 -20.23025 -19.66856 -18.18992 -17.77269 -17.42475 -16.29196 -15.90392 -15.86937 -15.50747 -15.35306 -15.12981 -15.07608 -14.51555 -14.43909 -14.05557 -13.93464 -13.83533 -13.46270 -13.18037 -13.04187 -12.84791 -12.67221 -12.38518 -12.13592 -12.08349 -11.92811 -11.73806 -11.50182 -11.40526 -11.19020 -11.10597 -10.96125 -10.93234 -10.87209 -10.53551 -10.31367 -10.16876 -9.37155 -9.06792 -9.01993 -8.73154 -8.38892 -8.29665 -7.84943 -6.16213 -4.22952 0.99351 1.27944 2.02416 2.55083 3.23662 3.27448 3.30732 3.33761 3.41263 3.58469 3.84564 4.08741 4.21710 4.30506 4.31138 4.50255 4.52611 4.57979 4.73593 4.89190 5.04921 5.11727 5.19429 5.20029 5.24507 5.27899 5.34677 5.39467 5.43937 5.45216 5.51378 5.57644 5.63764 5.72075 5.79772 5.92457 6.08927 6.11309 6.22025 6.28233 6.44579 6.83080 6.96505 6.98604 7.33165 7.41592 7.47074 7.53566 7.67776 7.68726 7.98074 8.65391 8.79978 9.13832 9.43934 10.94055 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.001460 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.560905 B =19179.945790 C =19558.485733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.126 3.874 3 H 0.052 0.948 4 N -0.665 5.665 5 C 0.039 3.961 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.101 4.101 19 C -0.096 4.096 20 C -0.122 4.122 21 C 0.137 3.863 22 N -0.668 5.668 23 C 0.542 3.458 24 O -0.521 6.521 25 C -0.197 4.197 26 C -0.151 4.151 27 C -0.146 4.146 28 C -0.143 4.143 29 C -0.078 4.078 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.353 0.647 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.412 0.588 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.126 0.874 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -1.184 32.687 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.070 0.930 4 N -0.298 5.298 5 C -0.093 4.093 6 C 0.281 3.719 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.129 3.871 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.142 4.142 21 C 0.043 3.957 22 N -0.313 5.313 23 C 0.330 3.670 24 O -0.396 6.396 25 C -0.218 4.218 26 C -0.188 4.188 27 C -0.183 4.183 28 C -0.164 4.164 29 C -0.097 4.097 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.247 0.753 43 H 0.145 0.855 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.144 0.856 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.482 -1.676 32.538 32.767 hybrid contribution 1.096 1.035 -0.830 1.721 sum -2.386 -0.642 31.707 31.804 Atomic orbital electron populations 1.21797 0.93528 1.02813 1.01220 1.20436 0.96173 0.95085 0.86705 0.93045 1.60267 1.34991 1.31865 1.02721 1.21898 1.02117 0.94351 0.90951 1.20341 0.79150 0.87874 0.84548 1.90660 1.50750 1.15888 1.84893 1.46443 1.65522 1.13812 1.10614 1.19090 0.94958 0.92498 0.80509 1.21274 1.45978 0.96522 0.94331 0.91861 1.24952 0.94837 0.95315 0.98917 1.69982 1.43075 1.14319 1.24901 0.86368 0.77795 0.80705 0.82080 1.19633 1.20820 1.20796 1.19947 1.00557 0.94087 0.95574 1.20933 0.98311 0.99811 0.92428 1.21171 1.01434 0.92759 0.98829 1.17759 0.99287 0.91827 0.86805 1.43411 1.55852 1.27565 1.04452 1.19836 0.77916 0.85579 0.83657 1.90711 1.41503 1.20923 1.86436 1.22166 1.02719 1.06130 0.90831 1.22986 0.96092 0.98767 1.00948 1.22996 1.02742 0.98621 0.93966 1.20931 1.02014 0.99751 0.93666 1.20964 0.97224 0.93889 0.97585 0.92309 0.91674 0.92586 0.82680 0.88529 0.92804 0.77801 0.95625 0.95528 0.92518 0.85826 0.84586 0.75258 0.85532 0.88100 0.87500 0.87670 0.87258 0.85649 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.39 37.16 0.35 -1.05 16 2 C 0.13 1.38 2.82 -68.86 -0.19 1.18 16 3 H 0.05 0.52 7.66 -51.92 -0.40 0.13 16 4 N -0.66 -9.02 5.31 -109.22 -0.58 -9.60 16 5 C 0.04 0.55 5.96 -4.98 -0.03 0.52 16 6 C 0.50 9.82 7.87 -10.99 -0.09 9.73 16 7 O -0.54 -13.03 16.20 5.55 0.09 -12.94 16 8 N -0.71 -14.96 5.55 -61.47 -0.34 -15.30 16 9 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 10 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 11 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 14 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.10 -1.10 4.72 -104.59 -0.49 -1.60 16 19 C -0.10 -1.02 9.66 -39.61 -0.38 -1.40 16 20 C -0.12 -1.36 8.70 -39.39 -0.34 -1.70 16 21 C 0.14 1.38 6.30 -83.69 -0.53 0.85 16 22 N -0.67 -5.09 5.34 -9.86 -0.05 -5.14 16 23 C 0.54 4.71 7.46 -10.98 -0.08 4.63 16 24 O -0.52 -6.41 13.69 5.55 0.08 -6.33 16 25 C -0.20 -1.05 6.19 -91.77 -0.57 -1.62 16 26 C -0.15 -0.68 10.24 -26.70 -0.27 -0.95 16 27 C -0.15 -0.74 10.05 -26.71 -0.27 -1.01 16 28 C -0.14 -1.39 9.97 -39.39 -0.39 -1.79 16 29 C -0.08 -0.85 8.99 -39.61 -0.36 -1.21 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.35 5.11 7.69 -39.29 -0.30 4.81 16 34 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 35 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 1.11 8.03 -52.49 -0.42 0.69 16 41 H 0.14 1.61 6.22 -52.49 -0.33 1.29 16 42 H 0.41 1.82 8.82 -40.82 -0.36 1.46 16 43 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.11 0.74 7.67 -51.93 -0.40 0.34 16 48 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.14 1.60 7.71 -52.49 -0.40 1.19 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -34.80 412.88 -10.44 -45.24 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.48 Total: 9.60 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.09 Total: -2.18 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.24 Total: -55.46 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.80 -10.44 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775107744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.175 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds