Wall clock time and date at job start Wed Apr 1 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46932 * 2 1 4 4 N 1.46903 * 109.47331 * 240.00248 * 2 1 3 5 5 C 1.46902 * 111.00050 * 84.99735 * 4 2 1 6 6 C 1.50696 * 109.47328 * 180.02562 * 5 4 2 7 7 O 1.21285 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00257 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00238 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47298 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00103 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99869 * 180.02562 * 10 9 8 13 13 N 1.31505 * 120.00071 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99622 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47309 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46799 * 119.99815 * 14 12 10 17 17 H 1.48496 * 109.46814 * 239.99690 * 14 12 10 18 18 C 1.50702 * 109.47272 * 119.99852 * 2 1 3 19 19 C 1.38283 * 119.93189 * 259.99936 * 18 2 1 20 20 C 1.38111 * 120.06984 * 180.02562 * 19 18 2 21 21 C 1.38877 * 119.92825 * 0.02562 * 20 19 18 22 22 N 1.39920 * 120.06746 * 179.97438 * 21 20 19 23 23 C 1.34778 * 120.00290 * 35.08810 * 22 21 20 24 24 O 1.21289 * 119.99970 * 355.37164 * 23 22 21 25 25 C 1.50700 * 120.00224 * 175.37784 * 23 22 21 26 26 C 1.53001 * 117.49474 * 248.62307 * 25 23 22 27 27 C 1.52996 * 117.50036 * 179.97438 * 25 23 22 28 28 C 1.38871 * 119.86126 * 0.25753 * 21 20 19 29 29 C 1.38117 * 119.92612 * 359.46875 * 28 21 20 30 30 H 1.09001 * 109.47424 * 60.00391 * 1 2 3 31 31 H 1.09009 * 109.46932 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47427 * 299.99263 * 1 2 3 33 33 H 1.00900 * 110.99850 * 208.94934 * 4 2 1 34 34 H 1.09006 * 109.47153 * 300.00420 * 5 4 2 35 35 H 1.08995 * 109.46923 * 59.99844 * 5 4 2 36 36 H 0.97003 * 119.99843 * 359.97438 * 8 6 5 37 37 H 1.09006 * 109.47045 * 299.99872 * 9 8 6 38 38 H 1.08995 * 109.47567 * 59.99624 * 9 8 6 39 39 H 0.97002 * 120.00215 * 180.02562 * 13 12 10 40 40 H 1.07993 * 119.96104 * 0.02904 * 19 18 2 41 41 H 1.07995 * 120.03532 * 180.02562 * 20 19 18 42 42 H 0.97007 * 119.99964 * 215.09107 * 22 21 20 43 43 H 1.09003 * 115.54914 * 34.32805 * 25 23 22 44 44 H 1.08996 * 117.50256 * 359.97438 * 26 25 23 45 45 H 1.09006 * 117.49363 * 145.02385 * 26 25 23 46 46 H 1.09000 * 117.50084 * 214.97959 * 27 25 23 47 47 H 1.09005 * 117.49700 * 359.97324 * 27 25 23 48 48 H 1.07998 * 120.03666 * 179.74509 * 28 21 20 49 49 H 1.07994 * 119.96184 * 180.28122 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5561 7 8 2.8669 -1.6987 -3.4705 8 7 2.7282 0.1207 -4.7325 9 6 3.2185 -0.6030 -5.9081 10 6 3.2830 0.3358 -7.0852 11 1 2.9879 1.3682 -6.9693 12 6 3.7178 -0.1236 -8.3103 13 7 4.0767 -1.3808 -8.4516 14 14 3.7971 1.0400 -9.7695 15 1 3.3420 2.3903 -9.3513 16 1 5.1951 1.1195 -10.2639 17 1 2.9166 0.5351 -10.8535 18 6 2.0323 -0.7104 1.2305 19 6 2.4586 0.0211 2.3238 20 6 2.9200 -0.6269 3.4528 21 6 2.9562 -2.0148 3.4890 22 7 3.4236 -2.6743 4.6310 23 6 3.1819 -2.1596 5.8529 24 8 2.6332 -1.0832 5.9598 25 6 3.5935 -2.9213 7.0864 26 6 2.4810 -3.4913 7.9686 27 6 3.2920 -2.2835 8.4440 28 6 2.5329 -2.7464 2.3871 29 6 2.0673 -2.0924 1.2632 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.9174 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7587 1.0463 -2.1182 36 1 2.5043 1.0620 -4.8010 37 1 4.2136 -0.9978 -5.7028 38 1 2.5413 -1.4259 -6.1368 39 1 4.3830 -1.7039 -9.3134 40 1 2.4305 1.1003 2.2949 41 1 3.2523 -0.0551 4.3065 42 1 3.9217 -3.5021 4.5433 43 1 4.5119 -3.5015 6.9960 44 1 1.4515 -3.3151 7.6571 45 1 2.6674 -4.4470 8.4588 46 1 4.0115 -2.4448 9.2468 47 1 2.7962 -1.3127 8.4450 48 1 2.5637 -3.8257 2.4106 49 1 1.7338 -2.6609 0.4078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775107744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:17 Heat of formation + Delta-G solvation = -46.817930 kcal Electronic energy + Delta-G solvation = -28260.316676 eV Core-core repulsion = 24186.751197 eV Total energy + Delta-G solvation = -4073.565479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.72844 -40.62086 -40.02180 -37.82878 -36.92201 -36.10162 -35.52490 -34.32557 -32.38283 -31.90365 -29.80825 -29.45125 -27.16454 -25.96238 -24.42294 -24.07306 -23.35409 -23.18257 -21.50479 -21.35433 -20.98498 -19.11595 -18.78888 -18.40778 -17.83871 -17.14981 -16.94775 -16.67052 -16.48362 -16.28402 -15.94663 -15.74908 -15.54862 -15.13273 -14.91244 -14.85778 -14.46396 -14.32817 -14.14116 -14.01954 -13.81220 -13.60880 -13.48631 -13.23607 -12.91502 -12.87679 -12.73132 -12.57275 -12.47021 -12.21960 -12.19879 -11.80559 -11.55923 -11.50604 -11.44738 -11.29347 -10.90906 -10.80763 -10.69614 -9.88550 -9.80399 -9.39854 -9.08084 -8.28536 -6.44910 0.19727 0.44942 1.38111 1.43754 1.44723 1.58202 1.81933 1.95106 2.29999 2.50212 2.76566 2.90759 3.06578 3.29133 3.58386 3.71484 3.81698 3.93390 3.95823 3.99393 4.06992 4.17240 4.30525 4.36377 4.45386 4.50793 4.53687 4.62389 4.63313 4.73098 4.87779 4.88986 4.97679 5.01584 5.11311 5.13462 5.20262 5.25978 5.27186 5.33549 5.39897 5.49524 5.50718 5.58224 5.71716 5.86294 6.00553 6.07598 6.32774 6.36768 6.66877 6.96633 7.05369 7.24809 7.54447 8.83895 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.001460 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.560905 B =19179.945790 C =19558.485733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 H 0.068 0.932 4 N -0.678 5.678 5 C 0.055 3.945 6 C 0.493 3.507 7 O -0.591 6.591 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.555 4.555 11 H 0.084 0.916 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.252 1.252 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.107 4.107 19 C -0.097 4.097 20 C -0.137 4.137 21 C 0.132 3.868 22 N -0.658 5.658 23 C 0.535 3.465 24 O -0.563 6.563 25 C -0.197 4.197 26 C -0.142 4.142 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.088 4.088 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.346 0.654 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.408 0.592 37 H -0.013 1.013 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.428 0.572 43 H 0.157 0.843 44 H 0.085 0.915 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.085 0.915 48 H 0.146 0.854 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 0.197 33.612 33.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 H 0.086 0.914 4 N -0.312 5.312 5 C -0.076 4.076 6 C 0.280 3.720 7 O -0.472 6.472 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.593 4.593 11 H 0.102 0.898 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.157 4.157 21 C 0.038 3.962 22 N -0.304 5.304 23 C 0.325 3.675 24 O -0.442 6.442 25 C -0.218 4.218 26 C -0.179 4.179 27 C -0.189 4.189 28 C -0.163 4.163 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.005 0.995 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.143 0.857 42 H 0.267 0.733 43 H 0.175 0.825 44 H 0.104 0.896 45 H 0.152 0.848 46 H 0.146 0.854 47 H 0.104 0.896 48 H 0.164 0.836 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.597 -0.277 33.500 33.693 hybrid contribution 1.117 0.537 -1.027 1.610 sum -2.480 0.260 32.473 32.569 Atomic orbital electron populations 1.21786 0.93007 1.02255 1.02076 1.20462 0.96418 0.95530 0.85429 0.91374 1.60275 1.34730 1.32525 1.03620 1.21821 1.03693 0.93995 0.88132 1.21407 0.77573 0.87534 0.85471 1.90638 1.52505 1.18363 1.85679 1.46175 1.65630 1.14511 1.09690 1.18518 0.92050 0.92116 0.82962 1.21667 1.45764 0.97369 0.94488 0.89766 1.26060 0.94056 0.97028 1.02451 1.70143 1.44122 1.16779 1.25947 0.85118 0.77787 0.78839 0.77508 1.17582 1.20499 1.20522 1.19971 1.00992 0.94114 0.95754 1.21072 0.97883 1.00620 0.92049 1.21226 1.02253 0.93432 0.98795 1.17888 0.98984 0.91758 0.87603 1.43388 1.55453 1.27883 1.03637 1.20512 0.77015 0.85255 0.84683 1.90691 1.43496 1.22929 1.87053 1.22259 1.04197 1.06259 0.89099 1.23069 0.95033 0.99629 1.00166 1.23050 1.03433 0.97875 0.94571 1.21109 1.01307 1.00821 0.93046 1.21007 0.97756 0.94161 0.97778 0.91798 0.92968 0.91341 0.83512 0.86035 0.89775 0.75603 0.99535 0.99615 0.92294 0.84353 0.85666 0.73344 0.82514 0.89623 0.84829 0.85372 0.89631 0.83591 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.39 71.98 0.68 -1.85 16 2 C 0.13 2.64 2.82 44.17 0.12 2.76 16 3 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 4 N -0.68 -17.67 5.31 -499.45 -2.65 -20.33 16 5 C 0.06 1.44 5.96 85.56 0.51 1.95 16 6 C 0.49 19.46 7.87 87.66 0.69 20.15 16 7 O -0.59 -29.24 16.20 -3.05 -0.05 -29.29 16 8 N -0.71 -29.67 5.55 -466.80 -2.59 -32.26 16 9 C 0.27 14.69 5.43 85.63 0.46 15.16 16 10 C -0.56 -30.20 9.28 25.60 0.24 -29.96 16 11 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 12 C 0.00 0.20 5.46 84.66 0.46 0.66 16 13 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 14 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 15 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 C -0.11 -2.27 4.72 -19.84 -0.09 -2.36 16 19 C -0.10 -2.00 9.66 22.25 0.21 -1.78 16 20 C -0.14 -3.06 8.70 22.39 0.19 -2.87 16 21 C 0.13 2.61 6.30 38.15 0.24 2.85 16 22 N -0.66 -9.47 5.34 -303.50 -1.62 -11.09 16 23 C 0.54 9.11 7.46 87.66 0.65 9.76 16 24 O -0.56 -14.31 13.69 -3.06 -0.04 -14.35 16 25 C -0.20 -1.78 6.19 -11.54 -0.07 -1.85 16 26 C -0.14 -1.04 10.24 30.61 0.31 -0.73 16 27 C -0.15 -1.38 10.05 30.61 0.31 -1.08 16 28 C -0.14 -2.69 9.97 22.39 0.22 -2.47 16 29 C -0.09 -1.91 8.99 22.25 0.20 -1.71 16 30 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 31 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.35 9.93 7.69 -89.69 -0.69 9.24 16 34 H 0.12 2.63 7.44 -2.38 -0.02 2.61 16 35 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 36 H 0.41 13.89 8.32 -92.71 -0.77 13.12 16 37 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.14 2.32 8.03 -2.91 -0.02 2.29 16 41 H 0.13 3.08 6.22 -2.91 -0.02 3.06 16 42 H 0.43 3.09 8.82 -92.70 -0.82 2.27 16 43 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 46 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 1.21 7.67 -2.38 -0.02 1.19 16 48 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 49 H 0.13 3.05 7.71 -2.91 -0.02 3.03 16 Total: -1.00 -79.53 412.88 -0.58 -80.11 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -1.28 Total: 32.33 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.35 Total: 6.62 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.58 Total: -119.76 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.09 Total: -43.63 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -79.53 -0.58 -80.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775107744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.289 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds