Wall clock time and date at job start Wed Apr 1 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47404 * 2 1 4 4 N 1.46903 * 109.46657 * 119.99819 * 2 1 3 5 5 C 1.46905 * 110.99956 * 274.99261 * 4 2 1 6 6 C 1.50702 * 109.46982 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99805 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47009 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99810 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99830 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47395 * 89.99987 * 14 12 10 16 16 H 1.48502 * 109.46720 * 209.99951 * 14 12 10 17 17 H 1.48496 * 109.46941 * 329.99596 * 14 12 10 18 18 C 1.50698 * 109.47198 * 239.99541 * 2 1 3 19 19 C 1.38308 * 119.96548 * 280.00457 * 18 2 1 20 20 C 1.38260 * 120.13928 * 180.02562 * 19 18 2 21 21 C 1.38131 * 120.07400 * 359.97438 * 20 19 18 22 22 C 1.38859 * 119.92716 * 0.02562 * 21 20 19 23 23 N 1.39919 * 120.06845 * 180.02562 * 22 21 20 24 24 C 1.46769 * 124.34857 * 354.18457 * 23 22 21 25 25 C 1.54484 * 105.47061 * 197.03785 * 24 23 22 26 26 C 1.54631 * 101.76795 * 334.58906 * 25 24 23 27 27 C 1.34417 * 124.35202 * 174.21442 * 23 22 21 28 28 O 1.21292 * 124.93925 * 359.60447 * 27 23 22 29 29 C 1.38093 * 119.96562 * 100.30031 * 18 2 1 30 30 H 1.08997 * 109.47799 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47126 * 300.00418 * 1 2 3 32 32 H 1.09002 * 109.47119 * 60.00214 * 1 2 3 33 33 H 1.00892 * 111.00256 * 38.95470 * 4 2 1 34 34 H 1.08998 * 109.47277 * 300.00692 * 5 4 2 35 35 H 1.08995 * 109.46674 * 60.00619 * 5 4 2 36 36 H 0.96990 * 120.00500 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47331 * 299.99918 * 9 8 6 38 38 H 1.09003 * 109.47229 * 59.99887 * 9 8 6 39 39 H 0.97004 * 119.99782 * 180.02562 * 13 12 10 40 40 H 1.08000 * 119.92984 * 0.04400 * 19 18 2 41 41 H 1.08003 * 119.96190 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.03506 * 179.97438 * 21 20 19 43 43 H 1.09001 * 110.24476 * 78.04666 * 24 23 22 44 44 H 1.08997 * 110.24762 * 316.03894 * 24 23 22 45 45 H 1.09000 * 110.97104 * 216.46466 * 25 24 23 46 46 H 1.09006 * 110.96821 * 92.70761 * 25 24 23 47 47 H 1.08996 * 110.48478 * 143.47204 * 26 25 24 48 48 H 1.08997 * 110.48369 * 266.12077 * 26 25 24 49 49 H 1.07999 * 120.03104 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5884 -0.5214 3.5558 7 8 2.8694 -1.6981 3.4698 8 7 2.7286 0.1207 4.7324 9 6 3.2210 -0.6025 5.9074 10 6 3.2842 0.3360 7.0848 11 1 2.9877 1.3681 6.9693 12 6 3.7216 -0.1227 8.3093 13 7 4.0831 -1.3793 8.4499 14 14 3.7993 1.0405 9.7690 15 1 2.5057 1.0078 10.4975 16 1 4.8920 0.6175 10.6813 17 1 4.0621 2.4208 9.2885 18 6 2.0323 -0.7105 -1.2304 19 6 2.0664 -2.0927 -1.2644 20 6 2.5270 -2.7483 -2.3912 21 6 2.9544 -2.0241 -3.4871 22 6 2.9215 -0.6363 -3.4561 23 7 3.3533 0.1001 -4.5647 24 6 3.9711 -0.4872 -5.7594 25 6 4.6610 0.6882 -6.4868 26 6 3.8291 1.8953 -5.9949 27 6 3.2559 1.4365 -4.6722 28 8 2.7787 2.1681 -3.8307 29 6 2.4639 0.0193 -2.3204 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.4495 -1.4978 1.4101 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6164 2.5525 36 1 2.5036 1.0617 4.8012 37 1 2.5455 -1.4267 6.1362 38 1 4.2167 -0.9952 5.7015 39 1 4.3904 -1.7021 9.3115 40 1 1.7321 -2.6612 -0.4091 41 1 2.5520 -3.8278 -2.4148 42 1 3.3146 -2.5368 -4.3667 43 1 3.2083 -0.9310 -6.3991 44 1 4.7076 -1.2379 -5.4729 45 1 4.5845 0.5765 -7.5683 46 1 5.7024 0.7805 -6.1783 47 1 4.4685 2.7664 -5.8520 48 1 3.0288 2.1197 -6.7000 49 1 2.4412 1.0986 -2.2915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775280440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:46 Heat of formation + Delta-G solvation = -41.340548 kcal Electronic energy + Delta-G solvation = -28982.706573 eV Core-core repulsion = 24909.378611 eV Total energy + Delta-G solvation = -4073.327962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39777 -39.39496 -38.66082 -37.10720 -36.30111 -34.11425 -33.37904 -32.31253 -31.78556 -29.69822 -28.97166 -28.13274 -27.63849 -25.56958 -23.96817 -23.26720 -22.51072 -22.02896 -20.88656 -19.69794 -19.48410 -17.88535 -17.25586 -17.04647 -16.57256 -15.92567 -15.84689 -15.57643 -15.21077 -14.97963 -14.49900 -14.43911 -14.35269 -14.14337 -13.89904 -13.82027 -13.69160 -13.47219 -13.26765 -13.13589 -12.62393 -12.48345 -12.39089 -12.17061 -12.02717 -11.90379 -11.88600 -11.62995 -11.41390 -11.32334 -11.00243 -10.94899 -10.85484 -10.41465 -10.29499 -9.93854 -9.37056 -9.01387 -8.89387 -8.70805 -8.31392 -8.08529 -7.82587 -6.14293 -4.21074 1.12925 1.30256 2.24566 2.41990 3.25775 3.31795 3.34421 3.43860 3.64659 3.74058 3.86179 3.91326 4.22003 4.32808 4.40862 4.53467 4.67577 4.80410 4.87137 4.90188 4.96977 5.04902 5.10329 5.12159 5.21256 5.21675 5.31514 5.36588 5.38998 5.42267 5.44909 5.48661 5.63746 5.66128 5.74983 5.89496 5.98385 6.03019 6.30261 6.40883 6.56048 6.75877 6.95412 7.00516 7.35100 7.42816 7.49249 7.55694 7.67080 7.70594 8.00044 8.67580 8.81829 9.16180 9.45651 10.95901 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.001734 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.011422 B =16142.170620 C =16573.931535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 H 0.089 0.911 4 N -0.663 5.663 5 C 0.040 3.960 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.036 4.036 19 C -0.116 4.116 20 C -0.094 4.094 21 C -0.162 4.162 22 C 0.157 3.843 23 N -0.559 5.559 24 C 0.095 3.905 25 C -0.132 4.132 26 C -0.153 4.153 27 C 0.513 3.487 28 O -0.509 6.509 29 C -0.150 4.150 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.351 0.649 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 3.320 -34.022 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 H 0.107 0.893 4 N -0.295 5.295 5 C -0.093 4.093 6 C 0.281 3.719 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.037 4.037 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.183 4.183 22 C 0.064 3.936 23 N -0.283 5.283 24 C -0.027 4.027 25 C -0.170 4.170 26 C -0.194 4.194 27 C 0.302 3.698 28 O -0.385 6.385 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.829 2.806 -33.621 33.857 hybrid contribution -0.869 0.967 1.064 1.680 sum -3.698 3.773 -32.557 32.983 Atomic orbital electron populations 1.22495 0.96085 1.02634 1.02516 1.20460 0.92740 0.97511 0.88120 0.89328 1.60198 1.58044 1.09031 1.02200 1.21880 1.00803 0.96161 0.90434 1.20340 0.79374 0.87894 0.84286 1.90660 1.50698 1.16107 1.84712 1.46437 1.65512 1.13889 1.10561 1.19083 0.94999 0.92439 0.80492 1.21240 1.45980 0.96560 0.94364 0.91909 1.24959 0.94830 0.95349 0.98930 1.69980 1.42958 1.14376 1.24964 0.86411 0.77808 0.80749 0.81913 1.20490 1.21009 1.19762 1.19606 0.96678 0.93577 0.93836 1.20971 1.00636 0.93966 0.97956 1.20913 0.97927 0.99710 0.92697 1.20679 1.06008 0.91399 1.00174 1.17656 0.98680 0.90732 0.86503 1.45776 1.58221 1.07572 1.16690 1.22255 0.97746 0.97167 0.85566 1.22631 0.99969 0.92913 1.01438 1.22348 1.01614 1.00164 0.95232 1.21097 0.78314 0.81451 0.88944 1.90656 1.44637 1.57963 1.45209 1.21367 1.01843 1.02158 0.91668 0.92020 0.92060 0.91759 0.82848 0.88534 0.92692 0.77796 0.95622 0.95539 0.92475 0.85669 0.85677 0.86141 0.90156 0.89423 0.88587 0.89510 0.87461 0.87366 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.14 37.16 0.34 -1.48 16 2 C 0.12 1.47 2.79 -68.86 -0.19 1.28 16 3 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 4 N -0.66 -9.54 5.33 -109.22 -0.58 -10.12 16 5 C 0.04 0.59 5.97 -4.97 -0.03 0.56 16 6 C 0.50 10.11 7.87 -10.99 -0.09 10.02 16 7 O -0.54 -13.33 16.20 5.56 0.09 -13.24 16 8 N -0.71 -15.31 5.55 -61.47 -0.34 -15.66 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 10 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 11 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C -0.04 -0.45 4.95 -104.65 -0.52 -0.97 16 19 C -0.12 -1.39 9.32 -39.55 -0.37 -1.76 16 20 C -0.09 -0.97 10.04 -39.61 -0.40 -1.36 16 21 C -0.16 -1.57 9.41 -39.39 -0.37 -1.94 16 22 C 0.16 1.76 6.60 -83.70 -0.55 1.20 16 23 N -0.56 -4.99 3.14 -112.26 -0.35 -5.35 16 24 C 0.09 0.42 6.27 -3.12 -0.02 0.41 16 25 C -0.13 -0.34 7.18 -25.10 -0.18 -0.52 16 26 C -0.15 -0.73 6.86 -26.74 -0.18 -0.91 16 27 C 0.51 5.00 7.92 -10.86 -0.09 4.92 16 28 O -0.51 -6.94 14.82 5.55 0.08 -6.86 16 29 C -0.15 -1.93 8.90 -39.39 -0.35 -2.28 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.06 0.60 7.45 -51.92 -0.39 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.35 5.11 7.52 -39.30 -0.30 4.82 16 34 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 35 H 0.06 0.69 7.44 -51.93 -0.39 0.30 16 36 H 0.39 7.13 8.32 -40.82 -0.34 6.79 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 1.47 7.24 -52.49 -0.38 1.09 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.12 0.84 7.01 -52.49 -0.37 0.47 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.33 7.70 -51.93 -0.40 -0.07 16 45 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.15 2.13 5.24 -52.49 -0.28 1.86 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -36.12 403.41 -10.16 -46.28 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.41 Total: 8.18 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.44 Total: 0.29 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.54 Total: -56.80 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.17 Total: -20.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.12 -10.16 -46.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775280440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.935 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds