Wall clock time and date at job start Wed Apr 1 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47404 * 2 1 4 4 N 1.46903 * 109.46657 * 119.99819 * 2 1 3 5 5 C 1.46905 * 110.99956 * 274.99261 * 4 2 1 6 6 C 1.50702 * 109.46982 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99805 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47009 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99810 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99830 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47395 * 89.99987 * 14 12 10 16 16 H 1.48502 * 109.46720 * 209.99951 * 14 12 10 17 17 H 1.48496 * 109.46941 * 329.99596 * 14 12 10 18 18 C 1.50698 * 109.47198 * 239.99541 * 2 1 3 19 19 C 1.38308 * 119.96548 * 280.00457 * 18 2 1 20 20 C 1.38260 * 120.13928 * 180.02562 * 19 18 2 21 21 C 1.38131 * 120.07400 * 359.97438 * 20 19 18 22 22 C 1.38859 * 119.92716 * 0.02562 * 21 20 19 23 23 N 1.39919 * 120.06845 * 180.02562 * 22 21 20 24 24 C 1.46769 * 124.34857 * 354.18457 * 23 22 21 25 25 C 1.54484 * 105.47061 * 197.03785 * 24 23 22 26 26 C 1.54631 * 101.76795 * 334.58906 * 25 24 23 27 27 C 1.34417 * 124.35202 * 174.21442 * 23 22 21 28 28 O 1.21292 * 124.93925 * 359.60447 * 27 23 22 29 29 C 1.38093 * 119.96562 * 100.30031 * 18 2 1 30 30 H 1.08997 * 109.47799 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47126 * 300.00418 * 1 2 3 32 32 H 1.09002 * 109.47119 * 60.00214 * 1 2 3 33 33 H 1.00892 * 111.00256 * 38.95470 * 4 2 1 34 34 H 1.08998 * 109.47277 * 300.00692 * 5 4 2 35 35 H 1.08995 * 109.46674 * 60.00619 * 5 4 2 36 36 H 0.96990 * 120.00500 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47331 * 299.99918 * 9 8 6 38 38 H 1.09003 * 109.47229 * 59.99887 * 9 8 6 39 39 H 0.97004 * 119.99782 * 180.02562 * 13 12 10 40 40 H 1.08000 * 119.92984 * 0.04400 * 19 18 2 41 41 H 1.08003 * 119.96190 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.03506 * 179.97438 * 21 20 19 43 43 H 1.09001 * 110.24476 * 78.04666 * 24 23 22 44 44 H 1.08997 * 110.24762 * 316.03894 * 24 23 22 45 45 H 1.09000 * 110.97104 * 216.46466 * 25 24 23 46 46 H 1.09006 * 110.96821 * 92.70761 * 25 24 23 47 47 H 1.08996 * 110.48478 * 143.47204 * 26 25 24 48 48 H 1.08997 * 110.48369 * 266.12077 * 26 25 24 49 49 H 1.07999 * 120.03104 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5884 -0.5214 3.5558 7 8 2.8694 -1.6981 3.4698 8 7 2.7286 0.1207 4.7324 9 6 3.2210 -0.6025 5.9074 10 6 3.2842 0.3360 7.0848 11 1 2.9877 1.3681 6.9693 12 6 3.7216 -0.1227 8.3093 13 7 4.0831 -1.3793 8.4499 14 14 3.7993 1.0405 9.7690 15 1 2.5057 1.0078 10.4975 16 1 4.8920 0.6175 10.6813 17 1 4.0621 2.4208 9.2885 18 6 2.0323 -0.7105 -1.2304 19 6 2.0664 -2.0927 -1.2644 20 6 2.5270 -2.7483 -2.3912 21 6 2.9544 -2.0241 -3.4871 22 6 2.9215 -0.6363 -3.4561 23 7 3.3533 0.1001 -4.5647 24 6 3.9711 -0.4872 -5.7594 25 6 4.6610 0.6882 -6.4868 26 6 3.8291 1.8953 -5.9949 27 6 3.2559 1.4365 -4.6722 28 8 2.7787 2.1681 -3.8307 29 6 2.4639 0.0193 -2.3204 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.4495 -1.4978 1.4101 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6164 2.5525 36 1 2.5036 1.0617 4.8012 37 1 2.5455 -1.4267 6.1362 38 1 4.2167 -0.9952 5.7015 39 1 4.3904 -1.7021 9.3115 40 1 1.7321 -2.6612 -0.4091 41 1 2.5520 -3.8278 -2.4148 42 1 3.3146 -2.5368 -4.3667 43 1 3.2083 -0.9310 -6.3991 44 1 4.7076 -1.2379 -5.4729 45 1 4.5845 0.5765 -7.5683 46 1 5.7024 0.7805 -6.1783 47 1 4.4685 2.7664 -5.8520 48 1 3.0288 2.1197 -6.7000 49 1 2.4412 1.0986 -2.2915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775280440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:45 Heat of formation + Delta-G solvation = -67.101827 kcal Electronic energy + Delta-G solvation = -28983.823666 eV Core-core repulsion = 24909.378611 eV Total energy + Delta-G solvation = -4074.445055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05562 -40.65578 -39.92928 -37.92397 -37.24674 -36.09343 -34.35679 -34.00337 -32.82569 -30.63984 -29.76774 -29.44543 -28.58670 -27.01936 -24.85052 -24.38042 -23.87256 -22.86650 -21.63713 -21.35486 -20.31292 -19.12177 -18.40490 -17.77785 -17.52272 -17.39605 -17.15263 -16.75998 -16.58683 -16.35355 -15.80461 -15.50212 -15.32027 -14.98203 -14.83395 -14.69519 -14.56388 -14.35284 -14.27704 -14.05523 -14.03768 -13.81191 -13.62780 -13.32660 -13.15584 -12.94333 -12.89351 -12.73077 -12.67131 -12.37979 -12.23515 -12.20178 -11.96041 -11.85198 -11.49423 -11.07223 -10.80880 -10.75159 -10.69201 -9.84335 -9.76917 -9.39661 -8.87404 -8.29712 -6.46439 0.29257 0.43348 1.42352 1.44971 1.53729 1.56226 1.77769 1.82359 2.27741 2.47435 2.86361 3.04948 3.23517 3.33719 3.55357 3.76106 3.91210 3.98611 4.02791 4.11194 4.16307 4.20285 4.25772 4.32674 4.45263 4.45654 4.52585 4.59508 4.61626 4.66727 4.78996 4.84314 4.86294 5.05994 5.09017 5.10665 5.15823 5.17753 5.23928 5.24589 5.48232 5.48989 5.57876 5.61644 5.70640 5.84365 5.98163 6.09316 6.13632 6.29246 6.64699 6.93149 6.97267 7.22932 7.50663 8.82488 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.001734 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.011422 B =16142.170620 C =16573.931535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 H 0.087 0.913 4 N -0.677 5.677 5 C 0.056 3.944 6 C 0.494 3.506 7 O -0.590 6.590 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.557 4.557 11 H 0.084 0.916 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.256 1.256 18 C -0.048 4.048 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.156 4.156 22 C 0.148 3.852 23 N -0.562 5.562 24 C 0.085 3.915 25 C -0.119 4.119 26 C -0.146 4.146 27 C 0.494 3.506 28 O -0.561 6.561 29 C -0.173 4.173 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.408 0.592 37 H -0.012 1.012 38 H -0.015 1.015 39 H 0.269 0.731 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 4.607 -36.183 36.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 H 0.105 0.895 4 N -0.310 5.310 5 C -0.076 4.076 6 C 0.281 3.719 7 O -0.471 6.471 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.595 4.595 11 H 0.102 0.898 12 C -0.197 4.197 13 N -0.569 5.569 14 Si 0.809 3.191 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.180 1.180 18 C -0.049 4.049 19 C -0.154 4.154 20 C -0.113 4.113 21 C -0.176 4.176 22 C 0.054 3.946 23 N -0.285 5.285 24 C -0.036 4.036 25 C -0.156 4.156 26 C -0.186 4.186 27 C 0.286 3.714 28 O -0.440 6.440 29 C -0.194 4.194 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.244 0.756 37 H 0.006 0.994 38 H 0.003 0.997 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.146 0.854 46 H 0.108 0.892 47 H 0.131 0.869 48 H 0.145 0.855 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.885 4.121 -35.854 36.205 hybrid contribution -0.833 0.488 1.621 1.887 sum -3.718 4.609 -34.233 34.741 Atomic orbital electron populations 1.22414 0.94564 1.02923 1.03044 1.20437 0.93904 0.96969 0.86979 0.89529 1.60169 1.58882 1.09281 1.02652 1.21787 1.02555 0.95532 0.87760 1.21341 0.77851 0.87524 0.85150 1.90636 1.52444 1.18510 1.85488 1.46174 1.65562 1.14587 1.09646 1.18522 0.92033 0.92151 0.82874 1.21633 1.45914 0.97418 0.94529 0.89812 1.26087 0.93992 0.97114 1.02501 1.70143 1.43922 1.16829 1.26015 0.85139 0.77972 0.78654 0.77333 1.19512 1.20932 1.18009 1.19673 0.97264 0.93993 0.93968 1.21067 1.01805 0.93821 0.98739 1.21246 0.96847 1.01001 0.92195 1.20997 1.04924 0.90749 1.00980 1.17893 0.98181 0.91687 0.86859 1.46089 1.57677 1.07620 1.17141 1.22644 0.98542 0.98112 0.84266 1.22687 0.99362 0.90534 1.03020 1.22414 1.02344 1.01227 0.92567 1.22128 0.77588 0.81574 0.90129 1.90619 1.46904 1.59197 1.47305 1.21328 1.03592 1.01434 0.93027 0.91859 0.91220 0.91417 0.83165 0.86667 0.89395 0.75623 0.99386 0.99701 0.92250 0.86150 0.83370 0.82910 0.88204 0.88442 0.85352 0.89198 0.86926 0.85529 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.14 71.98 0.66 -2.75 16 2 C 0.13 3.08 2.79 44.17 0.12 3.20 16 3 H 0.09 2.11 7.65 -2.39 -0.02 2.09 16 4 N -0.68 -19.62 5.33 -499.45 -2.66 -22.28 16 5 C 0.06 1.59 5.97 85.56 0.51 2.10 16 6 C 0.49 20.44 7.87 87.66 0.69 21.13 16 7 O -0.59 -30.16 16.20 -3.04 -0.05 -30.21 16 8 N -0.71 -30.79 5.55 -466.79 -2.59 -33.38 16 9 C 0.27 15.05 5.43 85.63 0.46 15.52 16 10 C -0.56 -30.92 9.28 25.60 0.24 -30.68 16 11 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 14 Si 0.99 43.00 29.54 68.60 2.03 45.03 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 C -0.05 -1.24 4.95 -19.88 -0.10 -1.33 16 19 C -0.14 -3.27 9.32 22.29 0.21 -3.06 16 20 C -0.09 -1.85 10.04 22.25 0.22 -1.63 16 21 C -0.16 -2.77 9.41 22.39 0.21 -2.56 16 22 C 0.15 3.26 6.60 38.15 0.25 3.51 16 23 N -0.56 -9.51 3.14 -627.68 -1.97 -11.48 16 24 C 0.08 0.51 6.27 86.83 0.54 1.06 16 25 C -0.12 -0.22 7.18 31.65 0.23 0.01 16 26 C -0.15 -1.10 6.86 30.59 0.21 -0.89 16 27 C 0.49 9.60 7.92 87.90 0.70 10.29 16 28 O -0.56 -16.17 14.82 -3.07 -0.05 -16.22 16 29 C -0.17 -4.64 8.90 22.39 0.20 -4.44 16 30 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.07 1.26 7.45 -2.38 -0.02 1.24 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.35 10.35 7.52 -89.70 -0.67 9.68 16 34 H 0.12 2.93 8.05 -2.39 -0.02 2.91 16 35 H 0.09 2.00 7.44 -2.39 -0.02 1.98 16 36 H 0.41 14.58 8.32 -92.72 -0.77 13.80 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.12 2.94 7.24 -2.91 -0.02 2.92 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.15 1.63 7.01 -2.91 -0.02 1.61 16 43 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.10 0.42 7.70 -2.39 -0.02 0.40 16 45 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 47 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.13 4.05 5.24 -2.91 -0.02 4.03 16 Total: -1.00 -84.12 403.41 0.35 -83.77 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.46 Total: 31.43 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.82 Total: 10.07 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -6.93 Total: -123.88 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.09 Total: -46.43 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -84.12 0.35 -83.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775280440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.673 kcal (2) G-P(sol) polarization free energy of solvation -84.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds