Wall clock time and date at job start Wed Apr 1 2020 03:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46929 * 2 1 4 4 N 1.46897 * 109.47405 * 239.99392 * 2 1 3 5 5 C 1.46900 * 110.99910 * 85.00213 * 4 2 1 6 6 C 1.50693 * 109.47040 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00623 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99770 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99704 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99695 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00334 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00284 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47555 * 89.99910 * 14 12 10 16 16 H 1.48498 * 109.47460 * 209.99922 * 14 12 10 17 17 H 1.48503 * 109.47240 * 330.00048 * 14 12 10 18 18 C 1.50698 * 109.46712 * 119.99383 * 2 1 3 19 19 C 1.38300 * 119.96516 * 80.21513 * 18 2 1 20 20 C 1.38270 * 120.14266 * 180.25409 * 19 18 2 21 21 C 1.38127 * 120.06778 * 359.78586 * 20 19 18 22 22 C 1.38857 * 119.93406 * 359.97438 * 21 20 19 23 23 N 1.39918 * 120.07527 * 180.02562 * 22 21 20 24 24 C 1.46768 * 124.34832 * 353.97089 * 23 22 21 25 25 C 1.54656 * 105.38062 * 162.85474 * 24 23 22 26 26 C 1.54622 * 101.69043 * 25.76394 * 25 24 23 27 27 C 1.34416 * 124.35409 * 174.26717 * 23 22 21 28 28 O 1.21297 * 124.93784 * 0.38753 * 27 23 22 29 29 C 1.38090 * 119.96621 * 260.00147 * 18 2 1 30 30 H 1.09007 * 109.46888 * 60.00749 * 1 2 3 31 31 H 1.09002 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47419 * 300.00614 * 1 2 3 33 33 H 1.00899 * 111.00080 * 321.04964 * 4 2 1 34 34 H 1.09003 * 109.47135 * 299.99903 * 5 4 2 35 35 H 1.09003 * 109.47382 * 59.99509 * 5 4 2 36 36 H 0.96995 * 120.00237 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47213 * 299.99941 * 9 8 6 38 38 H 1.09000 * 109.46811 * 60.00093 * 9 8 6 39 39 H 0.96994 * 120.00270 * 180.02562 * 13 12 10 40 40 H 1.07995 * 119.93256 * 0.03692 * 19 18 2 41 41 H 1.08000 * 119.96454 * 179.76589 * 20 19 18 42 42 H 1.07997 * 120.03847 * 179.97438 * 21 20 19 43 43 H 1.09003 * 110.24500 * 281.97953 * 24 23 22 44 44 H 1.09000 * 110.24628 * 43.98168 * 24 23 22 45 45 H 1.09005 * 111.18959 * 267.59002 * 25 24 23 46 46 H 1.09002 * 110.82363 * 143.77833 * 25 24 23 47 47 H 1.08997 * 110.49184 * 216.30978 * 26 25 24 48 48 H 1.09000 * 110.48568 * 93.66232 * 26 25 24 49 49 H 1.08004 * 120.03536 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5875 -0.5221 -3.5558 7 8 2.8679 -1.6989 -3.4700 8 7 2.7285 0.1202 -4.7324 9 6 3.2199 -0.6035 -5.9076 10 6 3.2842 0.3351 -7.0849 11 1 2.9891 1.3675 -6.9691 12 6 3.7199 -0.1241 -8.3097 13 7 4.0799 -1.3812 -8.4506 14 14 3.8004 1.0395 -9.7687 15 1 5.1370 1.6851 -9.8140 16 1 3.5764 0.2769 -11.0231 17 1 2.7518 2.0817 -9.6291 18 6 2.0322 -0.7103 1.2306 19 6 2.0704 -2.0924 1.2631 20 6 2.5256 -2.7479 2.3923 21 6 2.9479 -2.0237 3.4900 22 6 2.9155 -0.6359 3.4587 23 7 3.3430 0.1007 4.5688 24 6 3.7235 -0.4895 5.8576 25 6 4.5208 0.6123 6.5939 26 6 3.9514 1.8963 5.9473 27 6 3.4527 1.4402 4.5938 28 8 3.1905 2.1761 3.6660 29 6 2.4579 0.0196 2.3228 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6161 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 2.5046 1.0614 -4.8010 37 1 4.2151 -0.9975 -5.7018 38 1 2.5432 -1.4268 -6.1364 39 1 4.3867 -1.7042 -9.3122 40 1 1.7408 -2.6609 0.4062 41 1 2.5507 -3.8274 2.4160 42 1 3.3030 -2.5362 4.3718 43 1 2.8335 -0.7589 6.4265 44 1 4.3513 -1.3665 5.7002 45 1 5.5898 0.5200 6.4020 46 1 4.3148 0.5902 7.6641 47 1 4.7347 2.6455 5.8327 48 1 3.1288 2.2912 6.5436 49 1 2.4315 1.0989 2.2953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775280441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:50 Heat of formation + Delta-G solvation = -40.870045 kcal Electronic energy + Delta-G solvation = -28985.186654 eV Core-core repulsion = 24911.879095 eV Total energy + Delta-G solvation = -4073.307560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39503 -39.39310 -38.65689 -37.10368 -36.29804 -34.10994 -33.37579 -32.30886 -31.78697 -29.69609 -28.97758 -28.12431 -27.63655 -25.56862 -23.96417 -23.26408 -22.51351 -22.03251 -20.89542 -19.69431 -19.48080 -17.88964 -17.25305 -17.03462 -16.55387 -15.91309 -15.84648 -15.58165 -15.21199 -14.97822 -14.58005 -14.45426 -14.30389 -14.17377 -13.88572 -13.77965 -13.68928 -13.46254 -13.25457 -13.15356 -12.62095 -12.48223 -12.37369 -12.17831 -12.01071 -11.90826 -11.88036 -11.64120 -11.41242 -11.33818 -11.00211 -10.94452 -10.85178 -10.41587 -10.29272 -9.92292 -9.36731 -9.01091 -8.89429 -8.70452 -8.31028 -8.08359 -7.82165 -6.13974 -4.20767 1.13038 1.30246 2.25043 2.42037 3.26151 3.32044 3.34468 3.44197 3.66041 3.73033 3.84611 3.92207 4.21759 4.33025 4.40794 4.53561 4.67334 4.80329 4.86361 4.89422 4.96638 5.05087 5.11229 5.11848 5.21210 5.21960 5.31792 5.36420 5.38670 5.42321 5.44734 5.48866 5.63448 5.66368 5.74983 5.89414 5.97684 6.03081 6.30519 6.40828 6.56216 6.76054 6.95589 7.00777 7.35435 7.43121 7.49642 7.56066 7.67557 7.70935 8.00375 8.67924 8.82146 9.16543 9.45957 10.96250 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.001738 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.889871 B =16105.601293 C =16593.587770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 H 0.089 0.911 4 N -0.662 5.662 5 C 0.040 3.960 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.036 4.036 19 C -0.116 4.116 20 C -0.094 4.094 21 C -0.162 4.162 22 C 0.157 3.843 23 N -0.559 5.559 24 C 0.095 3.905 25 C -0.132 4.132 26 C -0.154 4.154 27 C 0.513 3.487 28 O -0.509 6.509 29 C -0.151 4.151 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.351 0.649 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 3.295 34.372 34.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 H 0.107 0.893 4 N -0.295 5.295 5 C -0.093 4.093 6 C 0.281 3.719 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.037 4.037 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.183 4.183 22 C 0.064 3.936 23 N -0.283 5.283 24 C -0.027 4.027 25 C -0.169 4.169 26 C -0.194 4.194 27 C 0.302 3.698 28 O -0.384 6.384 29 C -0.171 4.171 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.171 0.829 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.542 2.781 33.921 34.218 hybrid contribution -0.859 0.972 -1.058 1.674 sum -4.401 3.754 32.863 33.368 Atomic orbital electron populations 1.22496 0.96102 1.02637 1.02485 1.20462 0.92704 0.97551 0.88136 0.89297 1.60194 1.58032 1.09028 1.02203 1.21879 1.00807 0.96167 0.90421 1.20343 0.79365 0.87897 0.84287 1.90660 1.50695 1.16108 1.84714 1.46443 1.65552 1.13848 1.10563 1.19084 0.95008 0.92433 0.80489 1.21240 1.46039 0.96505 0.94348 0.91909 1.24957 0.94855 0.95332 0.98926 1.69978 1.42975 1.14316 1.25021 0.86411 0.78481 0.80474 0.81506 1.20468 1.21021 1.19781 1.19606 0.96676 0.93576 0.93842 1.20972 1.00665 0.93973 0.97920 1.20914 0.97974 0.99707 0.92648 1.20680 1.05964 0.91432 1.00221 1.17658 0.98434 0.90741 0.86725 1.45772 1.63124 1.07323 1.12072 1.22291 0.99994 0.97652 0.82809 1.22658 1.00704 0.92848 1.00729 1.22349 1.03367 0.99480 0.94170 1.21100 0.77088 0.81480 0.90159 1.90660 1.49425 1.57828 1.40471 1.21380 1.01522 1.02183 0.92003 0.92049 0.92010 0.91811 0.82855 0.92704 0.88510 0.77797 0.95544 0.95615 0.92475 0.85663 0.85678 0.86132 0.90098 0.89466 0.89495 0.88616 0.87467 0.87359 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.14 37.16 0.34 -1.46 16 2 C 0.12 1.47 2.79 -68.87 -0.19 1.27 16 3 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 4 N -0.66 -9.58 5.32 -109.23 -0.58 -10.16 16 5 C 0.04 0.59 5.96 -4.98 -0.03 0.56 16 6 C 0.50 10.14 7.87 -10.98 -0.09 10.05 16 7 O -0.54 -13.37 16.20 5.55 0.09 -13.28 16 8 N -0.71 -15.36 5.55 -61.47 -0.34 -15.70 16 9 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 10 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 11 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 14 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 C -0.04 -0.45 4.95 -104.65 -0.52 -0.97 16 19 C -0.12 -1.39 9.32 -39.55 -0.37 -1.76 16 20 C -0.09 -0.97 10.04 -39.61 -0.40 -1.36 16 21 C -0.16 -1.57 9.42 -39.39 -0.37 -1.94 16 22 C 0.16 1.76 6.60 -83.69 -0.55 1.21 16 23 N -0.56 -5.00 3.14 -112.16 -0.35 -5.35 16 24 C 0.09 0.42 6.52 -3.02 -0.02 0.40 16 25 C -0.13 -0.34 7.19 -25.01 -0.18 -0.52 16 26 C -0.15 -0.73 6.86 -26.74 -0.18 -0.92 16 27 C 0.51 5.03 7.92 -10.86 -0.09 4.95 16 28 O -0.51 -7.01 14.81 5.54 0.08 -6.93 16 29 C -0.15 -1.94 8.91 -39.39 -0.35 -2.29 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.35 5.12 7.51 -39.29 -0.30 4.82 16 34 H 0.06 0.69 7.44 -51.93 -0.39 0.30 16 35 H 0.10 1.32 8.06 -51.93 -0.42 0.90 16 36 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 1.48 7.23 -52.49 -0.38 1.10 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.83 6.74 -52.49 -0.35 0.48 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.31 7.23 -51.93 -0.38 -0.07 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.15 2.14 5.23 -52.48 -0.27 1.86 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -36.26 402.91 -10.12 -46.38 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.37 Total: 8.21 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.44 Total: 0.35 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.54 Total: -56.93 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.26 -10.12 -46.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775280441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.510 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds