Wall clock time and date at job start Wed Apr 1 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46929 * 2 1 4 4 N 1.46897 * 109.47405 * 239.99392 * 2 1 3 5 5 C 1.46900 * 110.99910 * 85.00213 * 4 2 1 6 6 C 1.50693 * 109.47040 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00623 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99770 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99704 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99695 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00334 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00284 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47555 * 89.99910 * 14 12 10 16 16 H 1.48498 * 109.47460 * 209.99922 * 14 12 10 17 17 H 1.48503 * 109.47240 * 330.00048 * 14 12 10 18 18 C 1.50698 * 109.46712 * 119.99383 * 2 1 3 19 19 C 1.38300 * 119.96516 * 80.21513 * 18 2 1 20 20 C 1.38270 * 120.14266 * 180.25409 * 19 18 2 21 21 C 1.38127 * 120.06778 * 359.78586 * 20 19 18 22 22 C 1.38857 * 119.93406 * 359.97438 * 21 20 19 23 23 N 1.39918 * 120.07527 * 180.02562 * 22 21 20 24 24 C 1.46768 * 124.34832 * 353.97089 * 23 22 21 25 25 C 1.54656 * 105.38062 * 162.85474 * 24 23 22 26 26 C 1.54622 * 101.69043 * 25.76394 * 25 24 23 27 27 C 1.34416 * 124.35409 * 174.26717 * 23 22 21 28 28 O 1.21297 * 124.93784 * 0.38753 * 27 23 22 29 29 C 1.38090 * 119.96621 * 260.00147 * 18 2 1 30 30 H 1.09007 * 109.46888 * 60.00749 * 1 2 3 31 31 H 1.09002 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47419 * 300.00614 * 1 2 3 33 33 H 1.00899 * 111.00080 * 321.04964 * 4 2 1 34 34 H 1.09003 * 109.47135 * 299.99903 * 5 4 2 35 35 H 1.09003 * 109.47382 * 59.99509 * 5 4 2 36 36 H 0.96995 * 120.00237 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47213 * 299.99941 * 9 8 6 38 38 H 1.09000 * 109.46811 * 60.00093 * 9 8 6 39 39 H 0.96994 * 120.00270 * 180.02562 * 13 12 10 40 40 H 1.07995 * 119.93256 * 0.03692 * 19 18 2 41 41 H 1.08000 * 119.96454 * 179.76589 * 20 19 18 42 42 H 1.07997 * 120.03847 * 179.97438 * 21 20 19 43 43 H 1.09003 * 110.24500 * 281.97953 * 24 23 22 44 44 H 1.09000 * 110.24628 * 43.98168 * 24 23 22 45 45 H 1.09005 * 111.18959 * 267.59002 * 25 24 23 46 46 H 1.09002 * 110.82363 * 143.77833 * 25 24 23 47 47 H 1.08997 * 110.49184 * 216.30978 * 26 25 24 48 48 H 1.09000 * 110.48568 * 93.66232 * 26 25 24 49 49 H 1.08004 * 120.03536 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5875 -0.5221 -3.5558 7 8 2.8679 -1.6989 -3.4700 8 7 2.7285 0.1202 -4.7324 9 6 3.2199 -0.6035 -5.9076 10 6 3.2842 0.3351 -7.0849 11 1 2.9891 1.3675 -6.9691 12 6 3.7199 -0.1241 -8.3097 13 7 4.0799 -1.3812 -8.4506 14 14 3.8004 1.0395 -9.7687 15 1 5.1370 1.6851 -9.8140 16 1 3.5764 0.2769 -11.0231 17 1 2.7518 2.0817 -9.6291 18 6 2.0322 -0.7103 1.2306 19 6 2.0704 -2.0924 1.2631 20 6 2.5256 -2.7479 2.3923 21 6 2.9479 -2.0237 3.4900 22 6 2.9155 -0.6359 3.4587 23 7 3.3430 0.1007 4.5688 24 6 3.7235 -0.4895 5.8576 25 6 4.5208 0.6123 6.5939 26 6 3.9514 1.8963 5.9473 27 6 3.4527 1.4402 4.5938 28 8 3.1905 2.1761 3.6660 29 6 2.4579 0.0196 2.3228 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6161 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 2.5046 1.0614 -4.8010 37 1 4.2151 -0.9975 -5.7018 38 1 2.5432 -1.4268 -6.1364 39 1 4.3867 -1.7042 -9.3122 40 1 1.7408 -2.6609 0.4062 41 1 2.5507 -3.8274 2.4160 42 1 3.3030 -2.5362 4.3718 43 1 2.8335 -0.7589 6.4265 44 1 4.3513 -1.3665 5.7002 45 1 5.5898 0.5200 6.4020 46 1 4.3148 0.5902 7.6641 47 1 4.7347 2.6455 5.8327 48 1 3.1288 2.2912 6.5436 49 1 2.4315 1.0989 2.2953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775280441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:49 Heat of formation + Delta-G solvation = -66.795363 kcal Electronic energy + Delta-G solvation = -28986.310860 eV Core-core repulsion = 24911.879095 eV Total energy + Delta-G solvation = -4074.431766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.05484 -40.65688 -39.92873 -37.92545 -37.24418 -36.09444 -34.35744 -34.00006 -32.82861 -30.63737 -29.77007 -29.44710 -28.57837 -27.02102 -24.84575 -24.38246 -23.86888 -22.87181 -21.64530 -21.35962 -20.31117 -19.12465 -18.41063 -17.79830 -17.50322 -17.36918 -17.15735 -16.76368 -16.55438 -16.36440 -15.82192 -15.51307 -15.33217 -15.01229 -14.87924 -14.72017 -14.49913 -14.30759 -14.26182 -14.07590 -14.04087 -13.81743 -13.62264 -13.34324 -13.12459 -12.96038 -12.87854 -12.72391 -12.67351 -12.39045 -12.23421 -12.18893 -11.95854 -11.86874 -11.49441 -11.07106 -10.81068 -10.75423 -10.68285 -9.84476 -9.76993 -9.39487 -8.87281 -8.29797 -6.46566 0.29247 0.43333 1.42263 1.44882 1.53755 1.56061 1.77466 1.82410 2.27699 2.47464 2.86437 3.04837 3.22652 3.34586 3.54740 3.76214 3.91153 3.97962 4.03326 4.11426 4.16355 4.20301 4.25241 4.32380 4.45178 4.45790 4.52357 4.58346 4.62819 4.68237 4.78943 4.84523 4.85755 5.06156 5.09124 5.10524 5.16127 5.17988 5.23763 5.24580 5.48105 5.49356 5.57678 5.61666 5.70574 5.84243 5.98242 6.09426 6.13768 6.29492 6.64559 6.92903 6.97426 7.22798 7.50430 8.82445 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.001738 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.889871 B =16105.601293 C =16593.587770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 H 0.086 0.914 4 N -0.678 5.678 5 C 0.056 3.944 6 C 0.494 3.506 7 O -0.590 6.590 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.557 4.557 11 H 0.084 0.916 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.255 1.255 18 C -0.048 4.048 19 C -0.135 4.135 20 C -0.094 4.094 21 C -0.157 4.157 22 C 0.148 3.852 23 N -0.562 5.562 24 C 0.085 3.915 25 C -0.118 4.118 26 C -0.146 4.146 27 C 0.494 3.506 28 O -0.562 6.562 29 C -0.174 4.174 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.349 0.651 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.408 0.592 37 H -0.015 1.015 38 H -0.012 1.012 39 H 0.269 0.731 40 H 0.120 0.880 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 4.563 36.613 37.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 H 0.104 0.896 4 N -0.310 5.310 5 C -0.076 4.076 6 C 0.281 3.719 7 O -0.471 6.471 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.595 4.595 11 H 0.102 0.898 12 C -0.197 4.197 13 N -0.569 5.569 14 Si 0.809 3.191 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.179 1.179 18 C -0.049 4.049 19 C -0.154 4.154 20 C -0.113 4.113 21 C -0.177 4.177 22 C 0.054 3.946 23 N -0.285 5.285 24 C -0.036 4.036 25 C -0.156 4.156 26 C -0.186 4.186 27 C 0.286 3.714 28 O -0.441 6.441 29 C -0.194 4.194 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.244 0.756 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.146 0.854 47 H 0.130 0.870 48 H 0.145 0.855 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.807 4.077 36.238 36.664 hybrid contribution -0.760 0.499 -1.638 1.873 sum -4.567 4.576 34.600 35.198 Atomic orbital electron populations 1.22413 0.94455 1.02952 1.03088 1.20441 0.93970 0.96949 0.86965 0.89586 1.60164 1.58909 1.09296 1.02670 1.21783 1.02562 0.95520 0.87755 1.21345 0.77842 0.87529 0.85154 1.90635 1.52441 1.18512 1.85491 1.46180 1.65601 1.14546 1.09650 1.18524 0.92032 0.92157 0.82870 1.21633 1.45990 0.97360 0.94512 0.89810 1.26085 0.94010 0.97099 1.02499 1.70141 1.43931 1.16779 1.26069 0.85137 0.79080 0.78093 0.76777 1.19685 1.20851 1.17910 1.19674 0.97264 0.93989 0.93974 1.21067 1.01846 0.93830 0.98697 1.21248 0.96890 1.00999 0.92148 1.21001 1.04859 0.90777 1.01049 1.17896 0.97919 0.91696 0.87104 1.46086 1.62222 1.07358 1.12864 1.22686 1.01342 0.98548 0.80998 1.22715 1.00469 0.90330 1.02056 1.22416 1.04058 1.00775 0.91329 1.22138 0.76281 0.81624 0.91406 1.90622 1.51676 1.59102 1.42673 1.21342 1.03267 1.01462 0.93360 0.91241 0.91843 0.91290 0.83150 0.89362 0.86723 0.75623 0.99734 0.99355 0.92246 0.86160 0.83367 0.82878 0.88296 0.88256 0.89099 0.85393 0.86961 0.85543 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.14 71.98 0.66 -2.69 16 2 C 0.13 3.07 2.79 44.17 0.12 3.19 16 3 H 0.09 2.11 7.66 -2.39 -0.02 2.10 16 4 N -0.68 -19.75 5.32 -499.48 -2.66 -22.41 16 5 C 0.06 1.61 5.96 85.55 0.51 2.12 16 6 C 0.49 20.53 7.87 87.65 0.69 21.22 16 7 O -0.59 -30.27 16.20 -3.04 -0.05 -30.32 16 8 N -0.71 -30.91 5.55 -466.77 -2.59 -33.50 16 9 C 0.27 15.09 5.43 85.63 0.46 15.56 16 10 C -0.56 -30.99 9.28 25.60 0.24 -30.76 16 11 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 12 C 0.00 0.15 5.46 84.65 0.46 0.61 16 13 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 14 Si 0.99 43.09 29.54 68.60 2.03 45.12 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 18 C -0.05 -1.24 4.95 -19.89 -0.10 -1.33 16 19 C -0.14 -3.28 9.32 22.29 0.21 -3.07 16 20 C -0.09 -1.85 10.04 22.25 0.22 -1.63 16 21 C -0.16 -2.77 9.42 22.39 0.21 -2.56 16 22 C 0.15 3.26 6.60 38.16 0.25 3.51 16 23 N -0.56 -9.50 3.14 -627.34 -1.97 -11.47 16 24 C 0.08 0.50 6.52 86.89 0.57 1.07 16 25 C -0.12 -0.20 7.19 31.71 0.23 0.03 16 26 C -0.15 -1.11 6.86 30.59 0.21 -0.90 16 27 C 0.49 9.67 7.92 87.90 0.70 10.37 16 28 O -0.56 -16.40 14.81 -3.08 -0.05 -16.44 16 29 C -0.17 -4.66 8.91 22.39 0.20 -4.46 16 30 H 0.07 1.24 7.45 -2.38 -0.02 1.22 16 31 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.35 10.38 7.51 -89.70 -0.67 9.71 16 34 H 0.09 2.01 7.44 -2.39 -0.02 1.99 16 35 H 0.11 2.96 8.06 -2.39 -0.02 2.94 16 36 H 0.41 14.65 8.32 -92.71 -0.77 13.87 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.12 2.95 7.23 -2.91 -0.02 2.93 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.15 1.62 6.74 -2.91 -0.02 1.60 16 43 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.10 0.36 7.23 -2.39 -0.02 0.35 16 45 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 46 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.13 4.06 5.23 -2.91 -0.02 4.04 16 Total: -1.00 -84.55 402.91 0.38 -84.17 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.46 Total: 31.44 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.84 Total: 10.26 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -6.93 Total: -124.23 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.09 Total: -46.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -84.55 0.38 -84.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775280441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.377 kcal (2) G-P(sol) polarization free energy of solvation -84.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds