Wall clock time and date at job start Wed Apr 1 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.59767 * 2 1 4 4 C 1.52989 * 109.58974 * 120.30230 * 2 1 3 5 5 N 1.46010 * 110.03840 * 170.21897 * 4 2 1 6 6 C 1.46499 * 118.53742 * 161.81938 * 5 4 2 7 7 C 1.33719 * 122.93109 * 341.83249 * 5 4 2 8 8 O 1.21277 * 118.62726 * 181.68979 * 7 5 4 9 9 C 1.50255 * 122.74897 * 1.67092 * 7 5 4 10 10 N 1.46894 * 109.98669 * 342.83524 * 9 7 5 11 11 C 1.46904 * 111.00421 * 173.64694 * 10 9 7 12 12 C 1.50705 * 109.46964 * 54.62419 * 11 10 9 13 13 O 1.21282 * 120.00235 * 6.75304 * 12 11 10 14 14 N 1.34781 * 119.99658 * 186.75222 * 12 11 10 15 15 C 1.46497 * 119.99878 * 184.34395 * 14 12 11 16 16 C 1.50694 * 109.47072 * 90.00063 * 15 14 12 17 17 H 1.07996 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00140 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00111 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99666 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46948 * 90.00464 * 20 18 16 22 22 H 1.48506 * 109.47102 * 210.00143 * 20 18 16 23 23 H 1.48493 * 109.47609 * 330.00560 * 20 18 16 24 24 C 1.39923 * 119.99699 * 4.34436 * 14 12 11 25 25 C 1.38868 * 120.07389 * 284.69611 * 24 14 12 26 26 C 1.38106 * 119.93120 * 179.79809 * 25 24 14 27 27 C 1.38284 * 120.07019 * 0.48189 * 26 25 24 28 28 C 1.38283 * 120.14245 * 359.74881 * 27 26 25 29 29 C 1.38116 * 120.06808 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47450 * 300.00302 * 1 2 3 31 31 H 1.09004 * 109.46547 * 60.00316 * 1 2 3 32 32 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.37501 * 290.38898 * 4 2 1 34 34 H 1.08994 * 109.37824 * 50.16221 * 4 2 1 35 35 H 1.08999 * 109.47773 * 89.99407 * 6 5 4 36 36 H 1.09003 * 109.47430 * 209.99922 * 6 5 4 37 37 H 1.09000 * 109.46612 * 329.99402 * 6 5 4 38 38 H 1.09001 * 109.39120 * 102.97093 * 9 7 5 39 39 H 1.09001 * 109.38699 * 222.76569 * 9 7 5 40 40 H 1.08996 * 109.47047 * 174.62296 * 11 10 9 41 41 H 1.08999 * 109.46967 * 294.62571 * 11 10 9 42 42 H 1.08995 * 109.47386 * 210.00401 * 15 14 12 43 43 H 1.09008 * 109.47133 * 329.99957 * 15 14 12 44 44 H 0.97005 * 120.00300 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.03127 * 0.02562 * 25 24 14 46 46 H 1.07997 * 119.96915 * 180.23276 * 26 25 24 47 47 H 1.08003 * 119.93186 * 179.77200 * 27 26 25 48 48 H 1.08001 * 119.96790 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.03220 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0430 -0.7272 1.2444 5 7 3.4842 -0.9376 1.1425 6 6 4.2355 -1.2396 2.3633 7 6 4.1491 -0.8665 -0.0155 8 8 5.3420 -1.0856 -0.0150 9 6 3.4802 -0.5271 -1.3174 10 7 2.0267 -0.7008 -1.1953 11 6 1.3369 -0.2323 -2.4048 12 6 1.9126 -0.9267 -3.6121 13 8 2.7214 -1.8193 -3.4701 14 7 1.5286 -0.5558 -4.8497 15 6 2.0145 -1.2925 -6.0190 16 6 1.0633 -2.4178 -6.3346 17 1 0.1849 -2.5694 -5.7250 18 6 1.3150 -3.2546 -7.4011 19 7 0.4845 -4.2364 -7.6769 20 14 2.8348 -2.9929 -8.4552 21 1 3.9663 -3.7745 -7.8950 22 1 2.5591 -3.4458 -9.8424 23 1 3.1872 -1.5504 -8.4663 24 6 0.6658 0.5329 -5.0175 25 6 -0.6861 0.4004 -4.7291 26 6 -1.5343 1.4781 -4.8919 27 6 -1.0404 2.6854 -5.3510 28 6 0.3044 2.8193 -5.6437 29 6 1.1587 1.7466 -5.4786 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8267 -0.1276 2.1285 34 1 1.5437 -1.6922 1.3309 35 1 4.2645 -2.3187 2.5146 36 1 5.2523 -0.8586 2.2680 37 1 3.7487 -0.7662 3.2159 38 1 3.6998 0.5083 -1.5780 39 1 3.8573 -1.1850 -2.1003 40 1 0.2737 -0.4594 -2.3277 41 1 1.4721 0.8445 -2.5061 42 1 2.0762 -0.6184 -6.8733 43 1 3.0026 -1.7008 -5.8063 44 1 0.6614 -4.8249 -8.4275 45 1 -1.0731 -0.5435 -4.3744 46 1 -2.5851 1.3768 -4.6642 47 1 -1.7064 3.5256 -5.4810 48 1 0.6871 3.7634 -6.0025 49 1 2.2090 1.8520 -5.7069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782583285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:01 Heat of formation + Delta-G solvation = -3.398646 kcal Electronic energy + Delta-G solvation = -31441.232009 eV Core-core repulsion = 27369.549332 eV Total energy + Delta-G solvation = -4071.682678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82678 -39.92443 -38.45426 -37.42297 -35.44359 -34.86727 -32.65637 -31.93823 -30.83965 -30.06058 -29.59029 -27.95889 -26.70724 -26.12791 -24.68467 -22.68985 -22.58092 -22.14436 -21.14235 -19.14586 -18.84125 -17.76494 -17.00656 -16.86716 -16.48431 -16.11767 -16.02890 -15.54538 -15.29207 -15.13500 -14.72951 -14.33330 -14.18475 -14.14475 -13.71977 -13.46717 -13.38868 -13.25515 -12.85284 -12.74551 -12.53825 -12.52685 -12.41218 -12.30656 -12.04138 -11.85027 -11.72882 -11.42920 -11.33405 -11.28740 -11.04283 -10.90867 -10.58528 -10.21510 -9.85499 -9.58519 -9.38220 -8.85136 -8.81648 -8.72818 -8.61341 -8.35543 -7.90068 -6.11830 -4.11213 1.41784 1.52130 2.62090 2.88283 3.07775 3.24511 3.29761 3.34275 3.37040 3.80822 3.89589 4.35353 4.37104 4.43831 4.68384 4.83484 4.94525 5.05737 5.07397 5.08634 5.13824 5.18444 5.21675 5.24321 5.29545 5.33377 5.37522 5.49023 5.55024 5.57442 5.66052 5.69196 5.70477 5.86867 5.89892 5.98169 6.14591 6.27207 6.44976 6.58008 6.61203 6.63918 6.71498 6.79500 6.89271 6.97281 7.23556 7.31938 7.54053 8.10422 8.12598 8.40535 8.75805 8.90295 9.47389 11.01283 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.003955 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.648767 B = 7077.690212 C = 8869.643417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 H 0.052 0.948 4 C 0.127 3.873 5 N -0.612 5.612 6 C 0.081 3.919 7 C 0.527 3.473 8 O -0.550 6.550 9 C 0.023 3.977 10 N -0.508 5.508 11 C 0.036 3.964 12 C 0.516 3.484 13 O -0.510 6.510 14 N -0.557 5.557 15 C 0.219 3.781 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.894 5.894 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.154 3.846 25 C -0.112 4.112 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.113 4.113 29 C -0.125 4.125 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.042 0.958 44 H 0.265 0.735 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 16.149 16.079 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 H 0.070 0.930 4 C 0.003 3.997 5 N -0.346 5.346 6 C -0.062 4.062 7 C 0.316 3.684 8 O -0.427 6.427 9 C -0.106 4.106 10 N -0.235 5.235 11 C -0.094 4.094 12 C 0.303 3.697 13 O -0.385 6.385 14 N -0.286 5.286 15 C 0.100 3.900 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.191 1.191 24 C 0.063 3.937 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.147 4.147 28 C -0.132 4.132 29 C -0.145 4.145 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.335 14.840 16.063 21.993 hybrid contribution 0.605 0.793 -0.898 1.342 sum -1.730 15.633 15.166 21.849 Atomic orbital electron populations 1.21910 0.92536 1.03656 1.02659 1.22055 0.96827 0.95698 0.90266 0.93021 1.21577 0.79750 1.01073 0.97259 1.47363 1.08516 1.70748 1.07926 1.21660 0.97799 1.01063 0.85650 1.20196 0.87093 0.76160 0.84958 1.90704 1.15475 1.50094 1.86399 1.22790 0.87744 1.03049 0.97040 1.62305 1.03461 1.56147 1.01554 1.22188 1.00738 0.97824 0.88653 1.20180 0.82271 0.83636 0.83588 1.90606 1.33125 1.29981 1.84831 1.45573 1.46163 1.29312 1.07531 1.19803 0.96522 0.91990 0.81707 1.21229 1.09523 1.11820 1.14216 0.90610 1.24803 0.96330 0.94590 0.96979 1.69881 1.36733 1.17381 1.29264 0.86896 0.83934 0.79143 0.80034 1.19739 1.20962 1.19090 1.17702 0.89738 0.87127 0.99165 1.21494 0.92343 0.99041 1.00293 1.21032 0.99483 0.92767 0.99676 1.21110 0.95463 0.97723 1.00366 1.20967 0.93587 0.98301 1.00336 1.21351 1.00282 0.92200 1.00617 0.91487 0.91428 0.90824 0.90331 0.90582 0.92614 0.90471 0.91426 0.91837 0.83225 0.86828 0.92114 0.95022 0.93959 0.92481 0.85417 0.85903 0.86272 0.86082 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.52 37.16 0.32 -0.82 16 2 C 0.06 0.59 2.60 -67.56 -0.18 0.42 16 3 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 4 C 0.13 1.16 5.93 -4.31 -0.03 1.13 16 5 N -0.61 -7.47 3.23 -182.48 -0.59 -8.06 16 6 C 0.08 0.80 10.29 59.85 0.62 1.41 16 7 C 0.53 8.37 7.56 -11.67 -0.09 8.28 16 8 O -0.55 -10.53 16.33 5.56 0.09 -10.44 16 9 C 0.02 0.36 4.97 -5.20 -0.03 0.34 16 10 N -0.51 -7.06 4.52 -229.57 -1.04 -8.10 16 11 C 0.04 0.52 3.39 -4.97 -0.02 0.50 16 12 C 0.52 10.01 7.21 -10.98 -0.08 9.94 16 13 O -0.51 -11.88 13.30 5.56 0.07 -11.81 16 14 N -0.56 -11.13 2.49 -114.74 -0.29 -11.42 16 15 C 0.22 5.27 4.25 -5.20 -0.02 5.25 16 16 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 17 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 20 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 24 C 0.15 2.55 4.06 -83.69 -0.34 2.21 16 25 C -0.11 -1.67 8.98 -39.40 -0.35 -2.02 16 26 C -0.11 -1.32 10.04 -39.61 -0.40 -1.72 16 27 C -0.13 -1.40 10.04 -39.55 -0.40 -1.79 16 28 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 29 C -0.12 -1.78 9.96 -39.39 -0.39 -2.17 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.48 7.98 -51.93 -0.41 0.07 16 34 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.86 7.26 -51.93 -0.38 0.48 16 37 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 38 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.15 2.88 5.34 -51.93 -0.28 2.60 16 40 H 0.11 1.47 5.87 -51.93 -0.31 1.16 16 41 H 0.06 0.75 7.82 -51.93 -0.41 0.35 16 42 H 0.03 0.74 7.11 -51.93 -0.37 0.38 16 43 H 0.04 1.08 6.79 -51.92 -0.35 0.73 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 48 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 49 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -35.85 393.20 -9.42 -45.27 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.48 Total: 2.33 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.22 Total: 6.03 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.14 Total: -54.16 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.16 Total: -22.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.85 -9.42 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782583285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.866 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds