Wall clock time and date at job start Wed Apr 1 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.59767 * 2 1 4 4 C 1.52989 * 109.58974 * 120.30230 * 2 1 3 5 5 N 1.46010 * 110.03840 * 170.21897 * 4 2 1 6 6 C 1.46499 * 118.53742 * 161.81938 * 5 4 2 7 7 C 1.33719 * 122.93109 * 341.83249 * 5 4 2 8 8 O 1.21277 * 118.62726 * 181.68979 * 7 5 4 9 9 C 1.50255 * 122.74897 * 1.67092 * 7 5 4 10 10 N 1.46894 * 109.98669 * 342.83524 * 9 7 5 11 11 C 1.46904 * 111.00421 * 173.64694 * 10 9 7 12 12 C 1.50705 * 109.46964 * 54.62419 * 11 10 9 13 13 O 1.21282 * 120.00235 * 6.75304 * 12 11 10 14 14 N 1.34781 * 119.99658 * 186.75222 * 12 11 10 15 15 C 1.46497 * 119.99878 * 184.34395 * 14 12 11 16 16 C 1.50694 * 109.47072 * 90.00063 * 15 14 12 17 17 H 1.07996 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00140 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00111 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99666 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46948 * 90.00464 * 20 18 16 22 22 H 1.48506 * 109.47102 * 210.00143 * 20 18 16 23 23 H 1.48493 * 109.47609 * 330.00560 * 20 18 16 24 24 C 1.39923 * 119.99699 * 4.34436 * 14 12 11 25 25 C 1.38868 * 120.07389 * 284.69611 * 24 14 12 26 26 C 1.38106 * 119.93120 * 179.79809 * 25 24 14 27 27 C 1.38284 * 120.07019 * 0.48189 * 26 25 24 28 28 C 1.38283 * 120.14245 * 359.74881 * 27 26 25 29 29 C 1.38116 * 120.06808 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47450 * 300.00302 * 1 2 3 31 31 H 1.09004 * 109.46547 * 60.00316 * 1 2 3 32 32 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.37501 * 290.38898 * 4 2 1 34 34 H 1.08994 * 109.37824 * 50.16221 * 4 2 1 35 35 H 1.08999 * 109.47773 * 89.99407 * 6 5 4 36 36 H 1.09003 * 109.47430 * 209.99922 * 6 5 4 37 37 H 1.09000 * 109.46612 * 329.99402 * 6 5 4 38 38 H 1.09001 * 109.39120 * 102.97093 * 9 7 5 39 39 H 1.09001 * 109.38699 * 222.76569 * 9 7 5 40 40 H 1.08996 * 109.47047 * 174.62296 * 11 10 9 41 41 H 1.08999 * 109.46967 * 294.62571 * 11 10 9 42 42 H 1.08995 * 109.47386 * 210.00401 * 15 14 12 43 43 H 1.09008 * 109.47133 * 329.99957 * 15 14 12 44 44 H 0.97005 * 120.00300 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.03127 * 0.02562 * 25 24 14 46 46 H 1.07997 * 119.96915 * 180.23276 * 26 25 24 47 47 H 1.08003 * 119.93186 * 179.77200 * 27 26 25 48 48 H 1.08001 * 119.96790 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.03220 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 6 2.0430 -0.7272 1.2444 5 7 3.4842 -0.9376 1.1425 6 6 4.2355 -1.2396 2.3633 7 6 4.1491 -0.8665 -0.0155 8 8 5.3420 -1.0856 -0.0150 9 6 3.4802 -0.5271 -1.3174 10 7 2.0267 -0.7008 -1.1953 11 6 1.3369 -0.2323 -2.4048 12 6 1.9126 -0.9267 -3.6121 13 8 2.7214 -1.8193 -3.4701 14 7 1.5286 -0.5558 -4.8497 15 6 2.0145 -1.2925 -6.0190 16 6 1.0633 -2.4178 -6.3346 17 1 0.1849 -2.5694 -5.7250 18 6 1.3150 -3.2546 -7.4011 19 7 0.4845 -4.2364 -7.6769 20 14 2.8348 -2.9929 -8.4552 21 1 3.9663 -3.7745 -7.8950 22 1 2.5591 -3.4458 -9.8424 23 1 3.1872 -1.5504 -8.4663 24 6 0.6658 0.5329 -5.0175 25 6 -0.6861 0.4004 -4.7291 26 6 -1.5343 1.4781 -4.8919 27 6 -1.0404 2.6854 -5.3510 28 6 0.3044 2.8193 -5.6437 29 6 1.1587 1.7466 -5.4786 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8267 -0.1276 2.1285 34 1 1.5437 -1.6922 1.3309 35 1 4.2645 -2.3187 2.5146 36 1 5.2523 -0.8586 2.2680 37 1 3.7487 -0.7662 3.2159 38 1 3.6998 0.5083 -1.5780 39 1 3.8573 -1.1850 -2.1003 40 1 0.2737 -0.4594 -2.3277 41 1 1.4721 0.8445 -2.5061 42 1 2.0762 -0.6184 -6.8733 43 1 3.0026 -1.7008 -5.8063 44 1 0.6614 -4.8249 -8.4275 45 1 -1.0731 -0.5435 -4.3744 46 1 -2.5851 1.3768 -4.6642 47 1 -1.7064 3.5256 -5.4810 48 1 0.6871 3.7634 -6.0025 49 1 2.2090 1.8520 -5.7069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782583285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:00 Heat of formation + Delta-G solvation = -29.080888 kcal Electronic energy + Delta-G solvation = -31442.345675 eV Core-core repulsion = 27369.549332 eV Total energy + Delta-G solvation = -4072.796343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00486 -41.19044 -39.64117 -38.58550 -36.71711 -36.18028 -34.76567 -32.86208 -31.88534 -31.50316 -30.75935 -29.43097 -27.68179 -27.17233 -25.83313 -24.29875 -23.72686 -23.33505 -22.17855 -20.47829 -19.82893 -19.14172 -18.95345 -18.03352 -17.68422 -17.32587 -17.13878 -16.89889 -16.60857 -16.13458 -16.06881 -15.76904 -15.42557 -15.30932 -15.00367 -14.64680 -14.50955 -14.42229 -14.24818 -13.87160 -13.79890 -13.71096 -13.49954 -13.31311 -13.24638 -13.19811 -12.87062 -12.65143 -12.53364 -12.34397 -12.26422 -12.15264 -12.06378 -11.96197 -11.74565 -11.10981 -10.86461 -10.81892 -9.99233 -9.81534 -9.81061 -9.49775 -9.34849 -8.37110 -6.41708 0.36112 0.52026 1.28305 1.32783 1.39834 1.39970 1.58958 1.91844 2.01215 2.26956 2.64012 2.86775 2.97384 3.38815 3.51497 3.63130 3.96084 4.06673 4.09759 4.14461 4.16476 4.22446 4.33492 4.34190 4.38782 4.48616 4.58243 4.59843 4.61642 4.66766 4.71096 4.79809 4.81577 4.86929 4.88779 4.90749 5.03456 5.17511 5.29904 5.34989 5.38003 5.43280 5.56302 5.58799 5.64787 5.72748 5.86220 6.06881 6.19245 6.26364 6.58324 6.63857 6.97604 7.16465 7.30020 8.79504 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.003955 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.648767 B = 7077.690212 C = 8869.643417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.605 5.605 6 C 0.077 3.923 7 C 0.520 3.480 8 O -0.596 6.596 9 C 0.030 3.970 10 N -0.526 5.526 11 C 0.058 3.942 12 C 0.504 3.496 13 O -0.562 6.562 14 N -0.560 5.560 15 C 0.230 3.770 16 C -0.532 4.532 17 H 0.034 0.966 18 C 0.017 3.983 19 N -0.941 5.941 20 Si 0.940 3.060 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.242 1.242 24 C 0.117 3.883 25 C -0.128 4.128 26 C -0.105 4.105 27 C -0.113 4.113 28 C -0.105 4.105 29 C -0.134 4.134 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.023 0.977 44 H 0.269 0.731 45 H 0.106 0.894 46 H 0.150 0.850 47 H 0.159 0.841 48 H 0.154 0.846 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 20.191 17.299 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.337 5.337 6 C -0.065 4.065 7 C 0.308 3.692 8 O -0.478 6.478 9 C -0.100 4.100 10 N -0.253 5.253 11 C -0.072 4.072 12 C 0.294 3.706 13 O -0.441 6.441 14 N -0.288 5.288 15 C 0.108 3.892 16 C -0.571 4.571 17 H 0.052 0.948 18 C -0.182 4.182 19 N -0.581 5.581 20 Si 0.763 3.237 21 H -0.202 1.202 22 H -0.197 1.197 23 H -0.165 1.165 24 C 0.027 3.973 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.131 4.131 28 C -0.123 4.123 29 C -0.153 4.153 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.124 0.876 46 H 0.168 0.832 47 H 0.177 0.823 48 H 0.172 0.828 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.069 18.937 17.329 25.990 hybrid contribution 0.958 -0.428 -1.187 1.585 sum -3.111 18.509 16.142 24.755 Atomic orbital electron populations 1.21913 0.90522 1.03515 1.04304 1.22282 0.98337 0.95989 0.88350 0.91604 1.21920 0.77494 1.02016 0.98661 1.47503 1.09986 1.68770 1.07418 1.21847 0.97354 1.01394 0.85870 1.20250 0.86642 0.76230 0.86060 1.90668 1.17367 1.52577 1.87165 1.22464 0.89011 1.02520 0.95998 1.62265 1.02377 1.57891 1.02812 1.22032 1.00640 0.98203 0.86365 1.21217 0.81405 0.83196 0.84819 1.90591 1.35358 1.32425 1.85713 1.45483 1.46687 1.30059 1.06603 1.19374 0.94530 0.91324 0.83923 1.21436 1.08856 1.13301 1.13483 0.94815 1.25731 0.99693 0.94184 0.98546 1.70024 1.39006 1.18679 1.30345 0.85831 0.79262 0.80386 0.78234 1.20180 1.19695 1.16537 1.17954 0.89936 0.86911 1.02467 1.21431 0.92235 0.99497 1.01571 1.21336 1.00290 0.92137 0.98563 1.21579 0.95656 0.98133 0.97753 1.21352 0.93607 0.98492 0.98841 1.21445 1.00896 0.92179 1.00825 0.88161 0.91456 0.91870 0.85757 0.90555 0.92788 0.92182 0.87026 0.90741 0.87554 0.85490 0.89741 0.93918 0.95862 0.92211 0.87572 0.83240 0.82340 0.82806 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.52 71.98 0.61 -1.13 16 2 C 0.06 1.00 2.60 44.86 0.12 1.11 16 3 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 4 C 0.12 1.85 5.93 86.47 0.51 2.36 16 5 N -0.61 -14.08 3.23 -850.22 -2.74 -16.83 16 6 C 0.08 1.40 10.29 127.77 1.32 2.72 16 7 C 0.52 17.01 7.56 87.68 0.66 17.67 16 8 O -0.60 -24.19 16.33 -3.02 -0.05 -24.24 16 9 C 0.03 0.99 4.97 85.42 0.42 1.42 16 10 N -0.53 -14.69 4.52 -880.21 -3.98 -18.66 16 11 C 0.06 1.64 3.39 85.56 0.29 1.93 16 12 C 0.50 20.76 7.21 87.66 0.63 21.39 16 13 O -0.56 -28.41 13.30 -3.04 -0.04 -28.45 16 14 N -0.56 -23.48 2.49 -635.31 -1.58 -25.06 16 15 C 0.23 11.55 4.25 85.63 0.36 11.91 16 16 C -0.53 -31.73 9.94 25.60 0.25 -31.48 16 17 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 18 C 0.02 1.02 5.47 84.66 0.46 1.48 16 19 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 20 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 24 C 0.12 3.89 4.06 38.15 0.15 4.04 16 25 C -0.13 -3.77 8.98 22.39 0.20 -3.57 16 26 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 27 C -0.11 -1.93 10.04 22.29 0.22 -1.70 16 28 C -0.10 -2.01 10.04 22.25 0.22 -1.78 16 29 C -0.13 -3.60 9.96 22.39 0.22 -3.38 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.83 6.43 -2.38 -0.02 0.82 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.86 7.98 -2.39 -0.02 0.84 16 34 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.32 7.26 -2.39 -0.02 1.30 16 37 H 0.11 1.03 7.92 -2.39 -0.02 1.02 16 38 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 39 H 0.11 4.51 5.34 -2.39 -0.01 4.49 16 40 H 0.13 3.27 5.87 -2.39 -0.01 3.26 16 41 H 0.08 2.00 7.82 -2.39 -0.02 1.98 16 42 H 0.04 2.04 7.11 -2.39 -0.02 2.02 16 43 H 0.02 1.25 6.79 -2.38 -0.02 1.24 16 44 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 45 H 0.11 3.50 8.06 -2.91 -0.02 3.47 16 46 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 49 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -87.20 393.20 1.58 -85.62 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.89 Total: 18.81 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.90 Total: 21.04 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -8.00 Total: -120.17 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.09 Total: -52.69 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -87.20 1.58 -85.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782583285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.537 kcal (2) G-P(sol) polarization free energy of solvation -87.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds