Wall clock time and date at job start Wed Apr 1 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.71702 * 2 1 4 4 C 1.52980 * 109.59541 * 239.61474 * 2 1 3 5 5 N 1.46009 * 110.04476 * 189.94209 * 4 2 1 6 6 C 1.46493 * 118.53660 * 198.18745 * 5 4 2 7 7 C 1.33714 * 122.92224 * 18.15599 * 5 4 2 8 8 O 1.21289 * 118.62213 * 178.31690 * 7 5 4 9 9 C 1.50255 * 122.75813 * 358.32031 * 7 5 4 10 10 N 1.46901 * 109.97424 * 17.19597 * 9 7 5 11 11 C 1.46907 * 110.99683 * 73.07285 * 10 9 7 12 12 C 1.50703 * 109.47378 * 56.81869 * 11 10 9 13 13 O 1.21287 * 119.99748 * 7.46557 * 12 11 10 14 14 N 1.34775 * 120.00003 * 187.47567 * 12 11 10 15 15 C 1.46499 * 119.99799 * 4.08166 * 14 12 11 16 16 C 1.50696 * 109.47196 * 270.00092 * 15 14 12 17 17 H 1.07995 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99893 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 60.00194 * 20 18 16 22 22 H 1.48502 * 109.46955 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46976 * 299.99799 * 20 18 16 24 24 C 1.39921 * 120.00121 * 184.08362 * 14 12 11 25 25 C 1.38871 * 120.07255 * 240.52490 * 24 14 12 26 26 C 1.38108 * 119.92790 * 179.97438 * 25 24 14 27 27 C 1.38289 * 120.07320 * 359.97438 * 26 25 24 28 28 C 1.38277 * 120.13939 * 0.27842 * 27 26 25 29 29 C 1.38122 * 120.07208 * 359.48480 * 28 27 26 30 30 H 1.08996 * 109.47000 * 299.62856 * 1 2 3 31 31 H 1.08998 * 109.46713 * 59.62371 * 1 2 3 32 32 H 1.08996 * 109.47307 * 179.62043 * 1 2 3 33 33 H 1.09004 * 109.37744 * 310.11472 * 4 2 1 34 34 H 1.08997 * 109.37361 * 69.87781 * 4 2 1 35 35 H 1.08998 * 109.47439 * 89.99641 * 6 5 4 36 36 H 1.09012 * 109.47083 * 209.99700 * 6 5 4 37 37 H 1.09003 * 109.47457 * 329.99099 * 6 5 4 38 38 H 1.09002 * 109.38358 * 257.04551 * 9 7 5 39 39 H 1.09002 * 109.38771 * 137.35302 * 9 7 5 40 40 H 1.08994 * 109.47211 * 296.81378 * 11 10 9 41 41 H 1.09002 * 109.46930 * 176.81596 * 11 10 9 42 42 H 1.08999 * 109.47501 * 30.00275 * 15 14 12 43 43 H 1.09007 * 109.46806 * 150.00362 * 15 14 12 44 44 H 0.97000 * 119.99506 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03149 * 359.97438 * 25 24 14 46 46 H 1.08004 * 119.96610 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.92861 * 179.97438 * 27 26 25 48 48 H 1.07999 * 119.96468 * 179.72909 * 28 27 26 49 49 H 1.07992 * 120.03539 * 180.25918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0431 -0.7290 -1.2432 5 7 3.4837 -0.9426 -1.1393 6 6 4.2359 -1.2468 -2.3590 7 6 4.1471 -0.8722 0.0196 8 8 5.3396 -1.0939 0.0208 9 6 3.4773 -0.5301 1.3203 10 7 2.0235 -0.7012 1.1964 11 6 1.6623 -2.1247 1.1589 12 6 2.1893 -2.8094 2.3936 13 8 2.6851 -2.1540 3.2856 14 7 2.1097 -4.1501 2.5065 15 6 1.5934 -4.9496 1.3928 16 6 0.1007 -5.1017 1.5332 17 1 -0.4122 -4.6478 2.3682 18 6 -0.6103 -5.8203 0.5955 19 7 0.0144 -6.3734 -0.4211 20 14 -2.4607 -6.0082 0.7691 21 1 -3.0982 -4.6670 0.7522 22 1 -2.9839 -6.8198 -0.3591 23 1 -2.7709 -6.6876 2.0526 24 6 2.5202 -4.7783 3.6875 25 6 3.5527 -5.7065 3.6593 26 6 3.9558 -6.3244 4.8268 27 6 3.3329 -6.0193 6.0231 28 6 2.3010 -5.0993 6.0537 29 6 1.8963 -4.4742 4.8904 30 1 -0.3633 0.5080 0.8933 31 1 -0.3633 0.5197 -0.8866 32 1 -0.3634 -1.0276 -0.0068 33 1 1.5402 -1.6921 -1.3311 34 1 1.8311 -0.1284 -2.1278 35 1 4.5822 -0.3185 -2.8134 36 1 5.0938 -1.8718 -2.1105 37 1 3.5916 -1.7766 -3.0607 38 1 3.6989 0.5050 1.5801 39 1 3.8533 -1.1870 2.1047 40 1 2.0980 -2.5869 0.2731 41 1 0.5773 -2.2233 1.1238 42 1 1.8207 -4.4503 0.4509 43 1 2.0616 -5.9339 1.4045 44 1 -0.4858 -6.8793 -1.0805 45 1 4.0399 -5.9449 2.7253 46 1 4.7585 -7.0467 4.8055 47 1 3.6497 -6.5042 6.9346 48 1 1.8135 -4.8664 6.9889 49 1 1.0932 -3.7528 4.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782583286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:05 Heat of formation + Delta-G solvation = -10.366432 kcal Electronic energy + Delta-G solvation = -32072.736865 eV Core-core repulsion = 28000.752041 eV Total energy + Delta-G solvation = -4071.984824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.03117 -39.75488 -38.14760 -37.24516 -35.24988 -34.77512 -32.74741 -31.78069 -30.50374 -30.16353 -28.65237 -27.37365 -27.03941 -25.98290 -24.58743 -23.30402 -22.38446 -21.88512 -21.05400 -19.43884 -17.96798 -17.37824 -16.97236 -16.59302 -16.49373 -16.06279 -15.87777 -15.52138 -15.19901 -14.86962 -14.68487 -14.45472 -13.90395 -13.84541 -13.69575 -13.24067 -13.06367 -13.01188 -12.74590 -12.66020 -12.49461 -12.38674 -12.14385 -12.00859 -11.69129 -11.65037 -11.44689 -11.36903 -11.20563 -11.02990 -10.89313 -10.85641 -10.74439 -10.30618 -10.18185 -9.95838 -9.22982 -8.75645 -8.73482 -8.67945 -8.49505 -8.15133 -7.60309 -6.29247 -4.37677 1.75250 1.84401 2.68949 2.92652 3.15814 3.16947 3.22658 3.26409 3.47718 4.03853 4.20825 4.27741 4.41953 4.79866 4.84782 5.00371 5.04383 5.19295 5.30655 5.31992 5.32171 5.34149 5.35615 5.49146 5.52228 5.56708 5.66698 5.72763 5.81105 5.82933 5.93705 5.95926 5.98246 5.99616 6.06767 6.19177 6.36816 6.41681 6.61875 6.78185 6.82746 6.89370 6.91579 6.97866 7.05943 7.21497 7.41164 7.58749 7.66933 7.90049 8.08199 8.18903 8.64991 8.83097 9.30282 10.77275 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.005145 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.359794 B = 5441.114987 C = 7461.865826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.093 0.907 4 C 0.075 3.925 5 N -0.612 5.612 6 C 0.080 3.920 7 C 0.483 3.517 8 O -0.552 6.552 9 C 0.029 3.971 10 N -0.504 5.504 11 C 0.033 3.967 12 C 0.522 3.478 13 O -0.540 6.540 14 N -0.557 5.557 15 C 0.239 3.761 16 C -0.540 4.540 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.897 3.103 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.177 3.823 25 C -0.128 4.128 26 C -0.111 4.111 27 C -0.138 4.138 28 C -0.112 4.112 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.267 0.733 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 8.479 -0.169 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 H 0.111 0.889 4 C -0.050 4.050 5 N -0.346 5.346 6 C -0.063 4.063 7 C 0.270 3.730 8 O -0.429 6.429 9 C -0.102 4.102 10 N -0.228 5.228 11 C -0.096 4.096 12 C 0.311 3.689 13 O -0.419 6.419 14 N -0.284 5.284 15 C 0.120 3.880 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.527 5.527 20 Si 0.724 3.276 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.085 3.915 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.157 4.157 28 C -0.131 4.131 29 C -0.127 4.127 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.143 0.857 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.856 8.809 0.498 9.273 hybrid contribution -0.866 -0.761 -1.039 1.552 sum 1.989 8.048 -0.541 8.308 Atomic orbital electron populations 1.21804 0.92285 1.03509 1.02634 1.22113 0.97228 0.98167 0.86615 0.88855 1.22313 0.80030 1.02097 1.00514 1.47429 1.08543 1.70523 1.08076 1.21659 0.97596 1.00941 0.86125 1.21590 0.88043 0.76765 0.86569 1.90682 1.15705 1.49634 1.86885 1.22821 0.87014 1.05944 0.94392 1.62354 1.11556 1.11351 1.37529 1.22182 1.04172 0.87051 0.96236 1.20319 0.78337 0.81724 0.88528 1.90591 1.45040 1.64265 1.41960 1.45963 1.60958 1.06154 1.15356 1.19587 0.94617 0.91169 0.82625 1.21380 0.91764 1.34519 1.10189 0.91903 1.24921 0.98944 0.94835 0.94845 1.69911 1.36349 1.33872 1.12568 0.86561 0.84642 0.78455 0.77915 1.19927 1.21086 1.20001 1.17593 0.93210 0.94288 0.86421 1.21145 0.96363 0.98475 0.98746 1.20890 1.00036 0.99783 0.92304 1.21000 0.97666 0.99341 0.97652 1.20925 0.97496 0.97086 0.97561 1.21144 0.99359 1.00148 0.92082 0.90860 0.91781 0.91335 0.90376 0.90112 0.92907 0.90328 0.91177 0.87315 0.84425 0.91254 0.85698 0.94352 0.94161 0.92336 0.86118 0.86269 0.86563 0.86341 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.10 37.16 0.34 -1.14 16 2 C 0.07 0.78 2.84 -67.56 -0.19 0.59 16 3 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 4 C 0.07 0.86 4.93 -4.32 -0.02 0.84 16 5 N -0.61 -8.56 3.04 -182.48 -0.55 -9.11 16 6 C 0.08 0.97 10.31 59.84 0.62 1.59 16 7 C 0.48 8.10 6.96 -11.67 -0.08 8.02 16 8 O -0.55 -11.09 16.31 5.55 0.09 -11.00 16 9 C 0.03 0.46 5.44 -5.19 -0.03 0.43 16 10 N -0.50 -7.55 4.64 -229.56 -1.07 -8.62 16 11 C 0.03 0.58 3.47 -4.97 -0.02 0.56 16 12 C 0.52 10.59 6.91 -10.98 -0.08 10.51 16 13 O -0.54 -11.67 13.54 5.55 0.08 -11.59 16 14 N -0.56 -11.81 2.54 -114.74 -0.29 -12.10 16 15 C 0.24 5.52 4.87 -5.20 -0.03 5.49 16 16 C -0.54 -13.40 9.39 -34.44 -0.32 -13.72 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -23.41 13.29 55.43 0.74 -22.67 16 20 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.18 3.60 5.03 -83.69 -0.42 3.18 16 25 C -0.13 -2.36 9.39 -39.39 -0.37 -2.73 16 26 C -0.11 -1.75 10.04 -39.61 -0.40 -2.14 16 27 C -0.14 -2.04 10.04 -39.55 -0.40 -2.44 16 28 C -0.11 -1.78 10.04 -39.61 -0.40 -2.18 16 29 C -0.11 -2.04 9.13 -39.39 -0.36 -2.40 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.08 0.99 6.84 -51.93 -0.36 0.64 16 34 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.10 7.21 -51.92 -0.37 0.73 16 37 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 38 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.14 2.61 5.16 -51.93 -0.27 2.34 16 40 H 0.07 1.25 4.58 -51.93 -0.24 1.01 16 41 H 0.13 2.19 6.48 -51.93 -0.34 1.85 16 42 H 0.04 0.90 6.27 -51.93 -0.33 0.58 16 43 H 0.04 1.00 7.60 -51.93 -0.39 0.61 16 44 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.12 2.17 8.02 -52.49 -0.42 1.75 16 46 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 47 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 48 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -30.49 391.45 -9.62 -40.11 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.24 Total: 8.36 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.25 Total: 6.07 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -1.18 Total: -52.51 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.49 -9.62 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782583286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.743 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds