Wall clock time and date at job start Wed Apr 1 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.71702 * 2 1 4 4 C 1.52980 * 109.59541 * 239.61474 * 2 1 3 5 5 N 1.46009 * 110.04476 * 189.94209 * 4 2 1 6 6 C 1.46493 * 118.53660 * 198.18745 * 5 4 2 7 7 C 1.33714 * 122.92224 * 18.15599 * 5 4 2 8 8 O 1.21289 * 118.62213 * 178.31690 * 7 5 4 9 9 C 1.50255 * 122.75813 * 358.32031 * 7 5 4 10 10 N 1.46901 * 109.97424 * 17.19597 * 9 7 5 11 11 C 1.46907 * 110.99683 * 73.07285 * 10 9 7 12 12 C 1.50703 * 109.47378 * 56.81869 * 11 10 9 13 13 O 1.21287 * 119.99748 * 7.46557 * 12 11 10 14 14 N 1.34775 * 120.00003 * 187.47567 * 12 11 10 15 15 C 1.46499 * 119.99799 * 4.08166 * 14 12 11 16 16 C 1.50696 * 109.47196 * 270.00092 * 15 14 12 17 17 H 1.07995 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99893 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 60.00194 * 20 18 16 22 22 H 1.48502 * 109.46955 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46976 * 299.99799 * 20 18 16 24 24 C 1.39921 * 120.00121 * 184.08362 * 14 12 11 25 25 C 1.38871 * 120.07255 * 240.52490 * 24 14 12 26 26 C 1.38108 * 119.92790 * 179.97438 * 25 24 14 27 27 C 1.38289 * 120.07320 * 359.97438 * 26 25 24 28 28 C 1.38277 * 120.13939 * 0.27842 * 27 26 25 29 29 C 1.38122 * 120.07208 * 359.48480 * 28 27 26 30 30 H 1.08996 * 109.47000 * 299.62856 * 1 2 3 31 31 H 1.08998 * 109.46713 * 59.62371 * 1 2 3 32 32 H 1.08996 * 109.47307 * 179.62043 * 1 2 3 33 33 H 1.09004 * 109.37744 * 310.11472 * 4 2 1 34 34 H 1.08997 * 109.37361 * 69.87781 * 4 2 1 35 35 H 1.08998 * 109.47439 * 89.99641 * 6 5 4 36 36 H 1.09012 * 109.47083 * 209.99700 * 6 5 4 37 37 H 1.09003 * 109.47457 * 329.99099 * 6 5 4 38 38 H 1.09002 * 109.38358 * 257.04551 * 9 7 5 39 39 H 1.09002 * 109.38771 * 137.35302 * 9 7 5 40 40 H 1.08994 * 109.47211 * 296.81378 * 11 10 9 41 41 H 1.09002 * 109.46930 * 176.81596 * 11 10 9 42 42 H 1.08999 * 109.47501 * 30.00275 * 15 14 12 43 43 H 1.09007 * 109.46806 * 150.00362 * 15 14 12 44 44 H 0.97000 * 119.99506 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03149 * 359.97438 * 25 24 14 46 46 H 1.08004 * 119.96610 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.92861 * 179.97438 * 27 26 25 48 48 H 1.07999 * 119.96468 * 179.72909 * 28 27 26 49 49 H 1.07992 * 120.03539 * 180.25918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0431 -0.7290 -1.2432 5 7 3.4837 -0.9426 -1.1393 6 6 4.2359 -1.2468 -2.3590 7 6 4.1471 -0.8722 0.0196 8 8 5.3396 -1.0939 0.0208 9 6 3.4773 -0.5301 1.3203 10 7 2.0235 -0.7012 1.1964 11 6 1.6623 -2.1247 1.1589 12 6 2.1893 -2.8094 2.3936 13 8 2.6851 -2.1540 3.2856 14 7 2.1097 -4.1501 2.5065 15 6 1.5934 -4.9496 1.3928 16 6 0.1007 -5.1017 1.5332 17 1 -0.4122 -4.6478 2.3682 18 6 -0.6103 -5.8203 0.5955 19 7 0.0144 -6.3734 -0.4211 20 14 -2.4607 -6.0082 0.7691 21 1 -3.0982 -4.6670 0.7522 22 1 -2.9839 -6.8198 -0.3591 23 1 -2.7709 -6.6876 2.0526 24 6 2.5202 -4.7783 3.6875 25 6 3.5527 -5.7065 3.6593 26 6 3.9558 -6.3244 4.8268 27 6 3.3329 -6.0193 6.0231 28 6 2.3010 -5.0993 6.0537 29 6 1.8963 -4.4742 4.8904 30 1 -0.3633 0.5080 0.8933 31 1 -0.3633 0.5197 -0.8866 32 1 -0.3634 -1.0276 -0.0068 33 1 1.5402 -1.6921 -1.3311 34 1 1.8311 -0.1284 -2.1278 35 1 4.5822 -0.3185 -2.8134 36 1 5.0938 -1.8718 -2.1105 37 1 3.5916 -1.7766 -3.0607 38 1 3.6989 0.5050 1.5801 39 1 3.8533 -1.1870 2.1047 40 1 2.0980 -2.5869 0.2731 41 1 0.5773 -2.2233 1.1238 42 1 1.8207 -4.4503 0.4509 43 1 2.0616 -5.9339 1.4045 44 1 -0.4858 -6.8793 -1.0805 45 1 4.0399 -5.9449 2.7253 46 1 4.7585 -7.0467 4.8055 47 1 3.6497 -6.5042 6.9346 48 1 1.8135 -4.8664 6.9889 49 1 1.0932 -3.7528 4.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782583286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:04 Heat of formation + Delta-G solvation = -29.267086 kcal Electronic energy + Delta-G solvation = -32073.556459 eV Core-core repulsion = 28000.752041 eV Total energy + Delta-G solvation = -4072.804418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.32397 -41.21381 -39.52232 -38.54868 -36.85269 -36.04271 -34.63211 -32.86891 -31.84383 -31.59025 -30.04954 -28.97232 -28.27350 -27.09680 -25.78129 -25.13440 -23.72555 -23.26894 -22.20378 -20.82039 -19.28111 -18.75636 -18.73779 -18.15868 -17.80878 -17.35753 -17.17419 -16.94715 -16.53574 -16.42257 -16.03783 -15.91715 -15.27690 -15.17029 -14.95917 -14.45683 -14.34158 -14.30440 -14.19106 -14.16104 -13.70530 -13.65740 -13.43700 -13.41522 -13.09933 -12.95004 -12.84750 -12.66958 -12.56276 -12.46137 -12.33682 -12.14458 -12.08183 -11.86570 -11.77817 -11.56646 -10.84676 -10.61981 -10.26898 -9.89492 -9.84537 -9.40606 -9.15661 -8.23588 -6.39849 0.38175 0.49337 1.37182 1.42026 1.43947 1.50714 1.59077 1.80383 2.03010 2.39225 2.75899 2.88371 3.06587 3.32766 3.59798 3.71114 3.87158 4.02212 4.08010 4.08576 4.16627 4.26362 4.26753 4.36379 4.41398 4.48023 4.53863 4.55666 4.58770 4.65207 4.67077 4.73115 4.81474 4.90082 4.93403 5.04642 5.05547 5.11394 5.20541 5.40236 5.44961 5.51053 5.58682 5.63428 5.66023 5.77457 5.83598 5.96807 6.15825 6.22070 6.41045 6.70780 6.92189 7.18209 7.33189 8.81725 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.005145 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.359794 B = 5441.114987 C = 7461.865826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.117 0.883 4 C 0.073 3.927 5 N -0.608 5.608 6 C 0.076 3.924 7 C 0.478 3.522 8 O -0.595 6.595 9 C 0.035 3.965 10 N -0.505 5.505 11 C 0.049 3.951 12 C 0.513 3.487 13 O -0.556 6.556 14 N -0.561 5.561 15 C 0.258 3.742 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.028 3.972 19 N -0.917 5.917 20 Si 0.956 3.044 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.136 3.864 25 C -0.151 4.151 26 C -0.107 4.107 27 C -0.127 4.127 28 C -0.109 4.109 29 C -0.130 4.130 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.029 0.971 43 H 0.015 0.985 44 H 0.269 0.731 45 H 0.111 0.889 46 H 0.152 0.848 47 H 0.160 0.840 48 H 0.151 0.849 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 9.149 0.192 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 H 0.135 0.865 4 C -0.050 4.050 5 N -0.340 5.340 6 C -0.066 4.066 7 C 0.266 3.734 8 O -0.476 6.476 9 C -0.096 4.096 10 N -0.229 5.229 11 C -0.081 4.081 12 C 0.303 3.697 13 O -0.436 6.436 14 N -0.288 5.288 15 C 0.138 3.862 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.203 1.203 24 C 0.045 3.955 25 C -0.171 4.171 26 C -0.126 4.126 27 C -0.145 4.145 28 C -0.127 4.127 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.141 0.859 42 H 0.047 0.953 43 H 0.033 0.967 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.170 0.830 47 H 0.178 0.822 48 H 0.169 0.831 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.602 9.493 0.844 9.664 hybrid contribution -0.435 -1.001 -1.099 1.549 sum 1.166 8.491 -0.255 8.575 Atomic orbital electron populations 1.21789 0.90979 1.02718 1.04177 1.22346 0.98178 0.98647 0.84965 0.86547 1.22495 0.78163 1.02196 1.02149 1.47551 1.09671 1.68965 1.07801 1.21801 0.97154 1.01918 0.85702 1.21714 0.87575 0.76572 0.87574 1.90654 1.17490 1.51937 1.87552 1.22654 0.87429 1.06262 0.93216 1.62417 1.10877 1.09734 1.39869 1.21972 1.03539 0.88409 0.94197 1.20845 0.78016 0.81501 0.89299 1.90563 1.45774 1.64396 1.42884 1.45925 1.61094 1.06434 1.15370 1.19169 0.93860 0.90038 0.83086 1.21489 0.92456 1.34541 1.09931 0.92734 1.25618 1.02928 0.94355 0.94405 1.70008 1.37902 1.34432 1.13216 0.85631 0.79806 0.78871 0.77595 1.18613 1.20582 1.20326 1.17996 0.94932 0.95956 0.86621 1.21297 0.96685 0.99194 0.99881 1.21315 1.00349 0.99370 0.91519 1.21506 0.96142 0.98051 0.98813 1.21336 0.97535 0.96289 0.97553 1.21215 0.99744 1.01054 0.92959 0.90929 0.88611 0.93249 0.91661 0.86125 0.90697 0.92841 0.88936 0.85164 0.87757 0.92329 0.85923 0.95313 0.96665 0.92159 0.87067 0.83005 0.82194 0.83144 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.10 71.98 0.65 -1.89 16 2 C 0.07 1.41 2.84 44.85 0.13 1.54 16 3 H 0.12 2.02 8.08 -2.39 -0.02 2.00 16 4 C 0.07 1.55 4.93 86.47 0.43 1.98 16 5 N -0.61 -16.63 3.04 -850.21 -2.58 -19.21 16 6 C 0.08 1.80 10.31 127.77 1.32 3.12 16 7 C 0.48 16.40 6.96 87.68 0.61 17.01 16 8 O -0.60 -24.97 16.31 -3.06 -0.05 -25.02 16 9 C 0.04 1.15 5.44 85.42 0.46 1.61 16 10 N -0.50 -15.19 4.64 -880.20 -4.09 -19.28 16 11 C 0.05 1.77 3.47 85.56 0.30 2.07 16 12 C 0.51 22.07 6.91 87.66 0.61 22.68 16 13 O -0.56 -25.36 13.54 -3.05 -0.04 -25.40 16 14 N -0.56 -25.31 2.54 -635.31 -1.61 -26.93 16 15 C 0.26 12.65 4.87 85.63 0.42 13.06 16 16 C -0.55 -27.97 9.39 25.60 0.24 -27.73 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.03 1.43 5.46 84.66 0.46 1.89 16 19 N -0.92 -49.10 13.29 21.45 0.28 -48.81 16 20 Si 0.96 40.24 29.54 68.60 2.03 42.26 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.14 5.81 5.03 38.15 0.19 6.00 16 25 C -0.15 -5.78 9.39 22.39 0.21 -5.57 16 26 C -0.11 -3.21 10.04 22.25 0.22 -2.99 16 27 C -0.13 -3.40 10.04 22.29 0.22 -3.17 16 28 C -0.11 -3.29 10.04 22.25 0.22 -3.07 16 29 C -0.13 -5.05 9.13 22.40 0.20 -4.85 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.11 6.56 -2.39 -0.02 1.09 16 33 H 0.07 1.60 6.84 -2.38 -0.02 1.59 16 34 H 0.12 1.67 8.12 -2.39 -0.02 1.65 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.54 7.21 -2.38 -0.02 1.53 16 37 H 0.09 1.75 8.03 -2.39 -0.02 1.73 16 38 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.10 4.20 5.16 -2.39 -0.01 4.19 16 40 H 0.06 2.23 4.58 -2.39 -0.01 2.22 16 41 H 0.12 4.47 6.48 -2.39 -0.02 4.45 16 42 H 0.03 1.45 6.27 -2.39 -0.01 1.43 16 43 H 0.02 0.81 7.60 -2.38 -0.02 0.80 16 44 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 45 H 0.11 4.31 8.02 -2.91 -0.02 4.29 16 46 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 48 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 49 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -69.91 391.45 1.79 -68.12 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.95 Total: 32.59 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.90 Total: 21.68 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -8.00 Total: -114.23 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.91 1.79 -68.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782583286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.853 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds