Wall clock time and date at job start Wed Apr 1 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.75104 * 2 1 4 4 C 1.52992 * 109.72247 * 120.63136 * 2 1 3 5 5 N 1.45640 * 110.77471 * 166.40075 * 4 2 1 6 6 C 1.46497 * 117.70926 * 158.09948 * 5 4 2 7 7 C 1.33386 * 124.58957 * 338.07744 * 5 4 2 8 8 O 1.21279 * 118.48687 * 184.34562 * 7 5 4 9 9 C 1.50072 * 123.00896 * 4.16404 * 7 5 4 10 10 N 1.47050 * 109.08519 * 347.59486 * 9 7 5 11 11 C 1.34783 * 121.35139 * 222.68923 * 10 9 7 12 12 O 1.21587 * 120.00090 * 179.71143 * 11 10 9 13 13 N 1.34781 * 120.00017 * 359.70918 * 11 10 9 14 14 C 1.46499 * 119.99874 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47391 * 325.00213 * 14 13 11 16 16 C 1.53002 * 109.46799 * 205.00309 * 14 13 11 17 17 C 1.50696 * 109.47344 * 65.00157 * 16 14 13 18 18 H 1.08002 * 119.99611 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99982 * 179.97438 * 17 16 14 20 20 N 1.31518 * 119.99788 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47019 * 89.99793 * 21 19 17 23 23 H 1.48497 * 109.47388 * 209.99898 * 21 19 17 24 24 H 1.48498 * 109.47097 * 329.99975 * 21 19 17 25 25 C 1.50701 * 109.46992 * 85.00222 * 14 13 11 26 26 C 1.38242 * 119.99675 * 39.72735 * 25 14 13 27 27 C 1.38239 * 119.99296 * 179.76653 * 26 25 14 28 28 C 1.38233 * 120.00563 * 0.48117 * 27 26 25 29 29 C 1.38240 * 119.99381 * 359.79325 * 28 27 26 30 30 C 1.38229 * 120.00483 * 359.95562 * 29 28 27 31 31 H 1.09000 * 109.47235 * 180.64092 * 1 2 3 32 32 H 1.08998 * 109.47080 * 300.63561 * 1 2 3 33 33 H 1.08997 * 109.47401 * 60.63434 * 1 2 3 34 34 H 1.08999 * 109.21542 * 286.73293 * 4 2 1 35 35 H 1.08999 * 109.21157 * 46.05965 * 4 2 1 36 36 H 1.09003 * 109.47162 * 89.99379 * 6 5 4 37 37 H 1.08995 * 109.47548 * 209.99733 * 6 5 4 38 38 H 1.09005 * 109.46616 * 330.00252 * 6 5 4 39 39 H 1.08998 * 109.53578 * 227.67549 * 9 7 5 40 40 H 1.08999 * 109.41418 * 107.43393 * 9 7 5 41 41 H 0.97002 * 119.99716 * 0.02562 * 13 11 10 42 42 H 1.09008 * 109.46873 * 185.00266 * 16 14 13 43 43 H 1.08997 * 109.47047 * 304.99955 * 16 14 13 44 44 H 0.97006 * 119.99810 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.00052 * 359.97438 * 26 25 14 46 46 H 1.07999 * 119.99600 * 180.24971 * 27 26 25 47 47 H 1.07991 * 120.00468 * 179.76758 * 28 27 26 48 48 H 1.08008 * 119.99692 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.00420 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0463 -0.7338 1.2392 5 7 3.4665 -1.0295 1.1102 6 6 4.2270 -1.2682 2.3393 7 6 4.1233 -1.0986 -0.0487 8 8 5.2894 -1.4315 -0.0337 9 6 3.4844 -0.7870 -1.3704 10 7 2.0269 -0.7064 -1.1928 11 6 1.1803 -1.2614 -2.0826 12 8 -0.0207 -1.1845 -1.9087 13 7 1.6649 -1.9017 -3.1651 14 6 0.7446 -2.5045 -4.1325 15 1 -0.1271 -2.8972 -3.6089 16 6 1.4530 -3.6433 -4.8690 17 6 1.7831 -4.7436 -3.8937 18 1 1.5142 -4.6412 -2.8527 19 6 2.4276 -5.8815 -4.3305 20 7 2.7153 -6.8421 -3.4795 21 14 2.8920 -6.0590 -6.1311 22 1 4.2526 -5.5049 -6.3483 23 1 2.8768 -7.4955 -6.5071 24 1 1.9161 -5.3175 -6.9695 25 6 0.3053 -1.4601 -5.1261 26 6 1.2141 -0.5336 -5.6022 27 6 0.8123 0.4215 -6.5173 28 6 -0.5005 0.4562 -6.9488 29 6 -1.4106 -0.4668 -6.4683 30 6 -1.0076 -1.4251 -5.5572 31 1 -0.3634 -1.0276 0.0115 32 1 -0.3633 0.5237 0.8842 33 1 -0.3634 0.5039 -0.8956 34 1 1.8884 -0.1087 2.1181 35 1 1.4950 -1.6664 1.3595 36 1 4.2010 -2.3306 2.5821 37 1 5.2605 -0.9539 2.1940 38 1 3.7851 -0.6980 3.1565 39 1 3.7220 -1.5751 -2.0849 40 1 3.8605 0.1675 -1.7386 41 1 2.6230 -1.9633 -3.3035 42 1 0.7993 -4.0334 -5.6493 43 1 2.3723 -3.2685 -5.3188 44 1 3.1690 -7.6425 -3.7867 45 1 2.2388 -0.5580 -5.2617 46 1 1.5232 1.1428 -6.8923 47 1 -0.8153 1.2046 -7.6608 48 1 -2.4364 -0.4394 -6.8051 49 1 -1.7185 -2.1464 -5.1821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782596271.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:08 Heat of formation + Delta-G solvation = -27.552518 kcal Electronic energy + Delta-G solvation = -31579.993454 eV Core-core repulsion = 27507.263386 eV Total energy + Delta-G solvation = -4072.730068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.16494 -40.89084 -39.93891 -37.93323 -36.78539 -35.97898 -34.79545 -33.56652 -31.91083 -31.58715 -30.95121 -29.59035 -27.76765 -26.70936 -26.43922 -23.88738 -23.57540 -23.18239 -21.80124 -21.25771 -20.06658 -19.07814 -18.85127 -18.37422 -17.57026 -17.32278 -17.10205 -16.92582 -16.48547 -16.28137 -16.08888 -15.91161 -15.35880 -15.04225 -14.70306 -14.60678 -14.43017 -14.30102 -14.13376 -13.99332 -13.85170 -13.65740 -13.48874 -13.44886 -13.23525 -13.08803 -12.96931 -12.46939 -12.42634 -12.38318 -12.32223 -11.93728 -11.78001 -11.69902 -11.48084 -11.40707 -10.78778 -10.35521 -10.04308 -9.89678 -9.72834 -9.59751 -9.48788 -8.28973 -6.33594 0.52518 0.59197 1.35204 1.35701 1.37933 1.45470 1.48855 1.93629 2.21793 2.34757 2.81223 3.02535 3.09724 3.25793 3.65777 3.90777 3.94396 4.03671 4.06397 4.17778 4.23522 4.30629 4.34986 4.37722 4.40659 4.46790 4.55981 4.60453 4.74227 4.75563 4.77170 4.79958 4.89251 5.04093 5.10838 5.15695 5.17406 5.20127 5.26202 5.35895 5.55466 5.58505 5.67790 5.67803 5.71193 5.78628 5.95389 6.20876 6.22787 6.24997 6.73205 6.86894 6.98510 7.30585 7.60877 8.87426 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007853 B = 0.004711 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.553259 B = 5941.632080 C = 8334.102180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.146 3.854 3 H 0.110 0.890 4 C 0.101 3.899 5 N -0.602 5.602 6 C 0.074 3.926 7 C 0.504 3.496 8 O -0.584 6.584 9 C 0.103 3.897 10 N -0.632 5.632 11 C 0.710 3.290 12 O -0.605 6.605 13 N -0.718 5.718 14 C 0.225 3.775 15 H 0.058 0.942 16 C -0.005 4.005 17 C -0.516 4.516 18 H 0.029 0.971 19 C 0.010 3.990 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.246 1.246 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.123 4.123 30 C -0.128 4.128 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.398 0.602 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.121 0.879 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.142 0.858 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 20.995 3.488 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.043 3.957 3 H 0.128 0.872 4 C -0.022 4.022 5 N -0.333 5.333 6 C -0.068 4.068 7 C 0.292 3.708 8 O -0.465 6.465 9 C -0.023 4.023 10 N -0.372 5.372 11 C 0.412 3.588 12 O -0.485 6.485 13 N -0.372 5.372 14 C 0.119 3.881 15 H 0.076 0.924 16 C -0.043 4.043 17 C -0.554 4.554 18 H 0.047 0.953 19 C -0.188 4.188 20 N -0.589 5.589 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.170 1.170 25 C -0.098 4.098 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.146 4.146 29 C -0.141 4.141 30 C -0.147 4.147 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.235 0.765 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.139 0.861 46 H 0.162 0.838 47 H 0.166 0.834 48 H 0.160 0.840 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.830 20.693 3.637 21.200 hybrid contribution 0.821 -1.361 -0.401 1.640 sum -2.009 19.332 3.235 19.704 Atomic orbital electron populations 1.21893 0.91324 1.02619 1.01922 1.21704 0.96766 0.95836 0.81391 0.87207 1.22165 0.78620 1.01217 1.00218 1.47259 1.10723 1.68472 1.06866 1.21896 0.97465 1.01715 0.85710 1.20429 0.86498 0.76934 0.86933 1.90738 1.18724 1.49393 1.87611 1.21746 0.79919 1.05817 0.94772 1.47414 1.04718 1.59543 1.25513 1.15931 0.84854 0.78166 0.79843 1.90923 1.14245 1.65994 1.77382 1.45266 1.10133 1.58014 1.23826 1.19400 0.91842 0.90034 0.86821 0.92371 1.19744 0.96366 0.92603 0.95599 1.21173 1.37407 1.01759 0.95091 0.95289 1.25920 0.95332 0.95201 1.02298 1.70075 1.43046 1.08679 1.37124 0.85740 0.79848 0.77454 0.80121 1.18922 1.21443 1.16958 1.20375 0.94636 0.96984 0.97788 1.21050 0.99336 0.95400 0.97840 1.21412 0.97049 0.98588 0.97101 1.21458 0.93317 0.99342 1.00443 1.21371 1.00830 0.94984 0.96923 1.21154 0.95217 0.99612 0.98670 0.93465 0.90132 0.92515 0.84930 0.92539 0.93431 0.91370 0.87109 0.87816 0.84772 0.76539 0.94857 0.94961 0.92639 0.86121 0.83754 0.83369 0.84030 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 7.57 71.98 0.55 -2.21 16 2 C 0.15 2.98 3.56 44.84 0.16 3.14 16 3 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 4 C 0.10 1.83 5.92 86.54 0.51 2.34 16 5 N -0.60 -13.85 3.20 -851.86 -2.73 -16.58 16 6 C 0.07 1.39 10.19 127.77 1.30 2.70 16 7 C 0.50 14.59 7.57 87.68 0.66 15.25 16 8 O -0.58 -21.21 16.25 -3.03 -0.05 -21.26 16 9 C 0.10 2.63 6.40 85.33 0.55 3.18 16 10 N -0.63 -17.28 2.98 -817.96 -2.44 -19.72 16 11 C 0.71 25.09 8.22 179.05 1.47 26.56 16 12 O -0.61 -24.24 11.54 -3.99 -0.05 -24.28 16 13 N -0.72 -26.27 3.93 -461.39 -1.81 -28.08 16 14 C 0.22 9.04 2.12 44.25 0.09 9.13 16 15 H 0.06 2.70 7.44 -2.39 -0.02 2.68 16 16 C -0.01 -0.24 3.56 29.85 0.11 -0.14 16 17 C -0.52 -28.94 9.39 25.60 0.24 -28.70 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 19 C 0.01 0.55 5.47 84.65 0.46 1.02 16 20 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 21 Si 0.94 43.61 27.47 68.60 1.88 45.49 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 25 C -0.10 -3.31 4.92 -19.86 -0.10 -3.41 16 26 C -0.12 -3.46 9.33 22.27 0.21 -3.25 16 27 C -0.12 -2.95 10.05 22.27 0.22 -2.72 16 28 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 29 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 30 C -0.13 -4.09 9.67 22.27 0.22 -3.87 16 31 H 0.05 1.42 6.70 -2.39 -0.02 1.40 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.57 6.87 -2.39 -0.02 1.55 16 34 H 0.13 1.24 7.84 -2.39 -0.02 1.22 16 35 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.46 7.23 -2.39 -0.02 1.44 16 38 H 0.11 1.15 7.80 -2.38 -0.02 1.13 16 39 H 0.10 2.97 5.96 -2.39 -0.01 2.96 16 40 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.40 13.69 6.24 -92.71 -0.58 13.11 16 42 H 0.03 1.52 7.20 -2.38 -0.02 1.50 16 43 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 44 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 45 H 0.12 3.30 7.71 -2.91 -0.02 3.28 16 46 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 47 H 0.15 2.30 8.06 -2.92 -0.02 2.27 16 48 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 49 H 0.11 3.65 8.04 -2.91 -0.02 3.63 16 Total: -1.00 -79.11 391.82 2.53 -76.58 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.32 Total: 33.57 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 7.10 Total: 13.48 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.68 Total: -123.59 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.10 Total: -45.54 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -79.11 2.53 -76.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782596271.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.027 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds