Wall clock time and date at job start Wed Apr 1 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.71647 * 2 1 4 4 C 1.53179 * 109.90828 * 239.30860 * 2 1 3 5 5 N 1.45648 * 110.66525 * 287.34704 * 4 2 1 6 6 C 1.46506 * 117.70111 * 157.96043 * 5 4 2 7 7 C 1.33374 * 124.59403 * 337.67641 * 5 4 2 8 8 O 1.21279 * 118.49390 * 184.55665 * 7 5 4 9 9 C 1.50440 * 123.01980 * 4.58075 * 7 5 4 10 10 N 1.47043 * 108.89094 * 347.28774 * 9 7 5 11 11 C 1.34780 * 121.35824 * 222.75921 * 10 9 7 12 12 O 1.21583 * 120.00409 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99636 * 0.02562 * 11 10 9 14 14 C 1.46497 * 119.99672 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47775 * 324.99935 * 14 13 11 16 16 C 1.53000 * 109.46927 * 205.00354 * 14 13 11 17 17 C 1.50703 * 109.47362 * 65.00305 * 16 14 13 18 18 H 1.08004 * 119.99746 * 359.97438 * 17 16 14 19 19 C 1.37878 * 120.00099 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47284 * 119.99662 * 21 19 17 24 24 H 1.48501 * 109.46786 * 239.99608 * 21 19 17 25 25 C 1.50702 * 109.47287 * 85.00832 * 14 13 11 26 26 C 1.38235 * 120.00098 * 39.71659 * 25 14 13 27 27 C 1.38224 * 120.00021 * 179.79325 * 26 25 14 28 28 C 1.38236 * 120.00133 * 0.44525 * 27 26 25 29 29 C 1.38229 * 119.99921 * 359.80952 * 28 27 26 30 30 C 1.38235 * 120.00232 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47262 * 299.39058 * 1 2 3 32 32 H 1.09002 * 109.46660 * 59.39414 * 1 2 3 33 33 H 1.09004 * 109.46979 * 179.38588 * 1 2 3 34 34 H 1.09006 * 109.40284 * 166.96274 * 4 2 1 35 35 H 1.08994 * 109.13850 * 47.56914 * 4 2 1 36 36 H 1.09001 * 109.47060 * 179.74072 * 6 5 4 37 37 H 1.09004 * 109.47073 * 299.73560 * 6 5 4 38 38 H 1.09000 * 109.47212 * 59.73643 * 6 5 4 39 39 H 1.08998 * 109.57181 * 107.11372 * 9 7 5 40 40 H 1.09007 * 109.56643 * 227.46911 * 9 7 5 41 41 H 0.96998 * 119.99976 * 0.02562 * 13 11 10 42 42 H 1.09006 * 109.47093 * 185.00201 * 16 14 13 43 43 H 1.09001 * 109.47145 * 304.99924 * 16 14 13 44 44 H 0.96999 * 120.00080 * 180.02562 * 20 19 17 45 45 H 1.08002 * 119.99530 * 0.02562 * 26 25 14 46 46 H 1.08005 * 119.99867 * 180.28243 * 27 26 25 47 47 H 1.08002 * 120.00046 * 179.84049 * 28 27 26 48 48 H 1.07996 * 120.00384 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.00464 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0516 -0.7351 -1.2385 5 7 1.8446 -2.1710 -1.1091 6 6 1.8130 -2.9680 -2.3380 7 6 1.6872 -2.8120 0.0498 8 8 1.6057 -4.0219 0.0354 9 6 1.6056 -2.1031 1.3742 10 7 2.0269 -0.7060 1.1932 11 6 2.8352 -0.0963 2.0828 12 8 3.1680 1.0601 1.9090 13 7 3.2747 -0.7686 3.1651 14 6 4.1538 -0.1061 4.1317 15 1 4.8177 0.5814 3.6076 16 6 4.9866 -1.1575 4.8678 17 6 5.9100 -1.8404 3.8920 18 1 5.9032 -1.5535 2.8508 19 6 6.7627 -2.8322 4.3283 20 7 6.7706 -3.1819 5.5960 21 14 7.9077 -3.6781 3.1189 22 1 7.7063 -3.1058 1.7634 23 1 9.3160 -3.4685 3.5409 24 1 7.6106 -5.1328 3.0907 25 6 3.3201 0.6605 5.1259 26 6 2.1412 0.1186 5.6029 27 6 1.3787 0.8198 6.5180 28 6 1.7903 2.0670 6.9492 29 6 2.9664 2.6112 6.4683 30 6 3.7313 1.9080 5.5565 31 1 -0.3633 0.5043 0.8954 32 1 -0.3633 0.5232 -0.8845 33 1 -0.3633 -1.0276 -0.0110 34 1 3.1167 -0.5354 -1.3564 35 1 1.5201 -0.3738 -2.1188 36 1 1.6564 -4.0170 -2.0868 37 1 0.9990 -2.6215 -2.9749 38 1 2.7599 -2.8583 -2.8667 39 1 0.5793 -2.1304 1.7403 40 1 2.2640 -2.5929 2.0917 41 1 3.0096 -1.6913 3.3035 42 1 5.5752 -0.6741 5.6476 43 1 4.3235 -1.8960 5.3184 44 1 7.3707 -3.8794 5.9030 45 1 1.8179 -0.8544 5.2633 46 1 0.4600 0.3944 6.8940 47 1 1.1932 2.6160 7.6623 48 1 3.2883 3.5854 6.8055 49 1 4.6501 2.3334 5.1805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782596273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:17 Heat of formation + Delta-G solvation = -23.335241 kcal Electronic energy + Delta-G solvation = -31469.223899 eV Core-core repulsion = 27396.676706 eV Total energy + Delta-G solvation = -4072.547193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03798 -39.59575 -38.62135 -36.91401 -35.23593 -34.90749 -32.86032 -32.05525 -30.63647 -30.34151 -28.88167 -28.42914 -27.53537 -25.46595 -24.94500 -22.65028 -22.26714 -21.92833 -20.72894 -19.82669 -18.41516 -17.94926 -17.44620 -16.74822 -16.32724 -16.14799 -16.09646 -15.68953 -15.03694 -14.89240 -14.56402 -14.55190 -14.27573 -13.89283 -13.46069 -13.39676 -13.27330 -13.07975 -12.96603 -12.66864 -12.54987 -12.41038 -12.32363 -12.11299 -12.09768 -11.68709 -11.53963 -11.23997 -11.11799 -10.92772 -10.74046 -10.59944 -10.50587 -10.30221 -9.78084 -9.70747 -9.28534 -8.95781 -8.75762 -8.52912 -8.45771 -8.33765 -8.17633 -6.08819 -4.12093 1.78164 1.81301 2.43984 2.54440 2.94145 3.27603 3.36073 3.40236 3.52073 4.08444 4.24911 4.29485 4.40953 4.49238 4.77940 4.87349 5.10186 5.12421 5.16984 5.24947 5.26693 5.27543 5.28169 5.32319 5.37828 5.40105 5.54130 5.56838 5.68374 5.70570 5.91160 5.92141 5.94667 6.08731 6.11946 6.32692 6.37618 6.45587 6.58434 6.85192 6.86015 6.89428 7.00561 7.15434 7.21199 7.41313 7.50150 7.63915 7.88097 7.95139 8.24927 8.31072 8.93183 8.93939 9.53341 11.01672 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007078 B = 0.005022 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.780165 B = 5573.912435 C = 8540.015509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.121 0.879 4 C 0.104 3.896 5 N -0.602 5.602 6 C 0.069 3.931 7 C 0.514 3.486 8 O -0.545 6.545 9 C 0.100 3.900 10 N -0.634 5.634 11 C 0.714 3.286 12 O -0.589 6.589 13 N -0.714 5.714 14 C 0.201 3.799 15 H 0.088 0.912 16 C 0.023 3.977 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.071 4.071 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.135 4.135 29 C -0.123 4.123 30 C -0.107 4.107 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.396 0.604 42 H 0.036 0.964 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 7.019 -9.426 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.139 0.861 4 C -0.020 4.020 5 N -0.335 5.335 6 C -0.074 4.074 7 C 0.301 3.699 8 O -0.422 6.422 9 C -0.026 4.026 10 N -0.375 5.375 11 C 0.416 3.584 12 O -0.467 6.467 13 N -0.367 5.367 14 C 0.096 3.904 15 H 0.106 0.894 16 C -0.014 4.014 17 C -0.557 4.557 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.072 4.072 26 C -0.125 4.125 27 C -0.143 4.143 28 C -0.153 4.153 29 C -0.141 4.141 30 C -0.126 4.126 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.232 0.768 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.151 7.128 -9.377 18.412 hybrid contribution 0.597 -1.024 -0.522 1.295 sum -13.554 6.104 -9.899 17.860 Atomic orbital electron populations 1.22120 0.94341 1.02370 1.02997 1.21379 0.94254 0.98184 0.82442 0.86110 1.21905 1.01972 0.79224 0.98858 1.47041 1.71424 1.08271 1.06799 1.21803 1.01397 0.98504 0.85713 1.20271 0.75853 0.87809 0.85955 1.90742 1.50795 1.13807 1.86878 1.21746 1.03382 0.82069 0.95407 1.47414 1.52669 1.11915 1.25509 1.15780 0.78353 0.84564 0.79748 1.90874 1.62444 1.15946 1.77408 1.45325 1.52273 1.15789 1.23308 1.20164 0.88414 0.95226 0.86552 0.89442 1.19412 0.94154 0.92229 0.95636 1.21150 1.20516 1.19149 0.94927 0.92420 1.24970 0.97122 0.96880 0.95063 1.69962 1.38261 1.30602 1.14138 0.86569 0.80802 0.79409 0.81459 1.19836 1.20950 1.20972 1.20573 0.95140 0.94348 0.97129 1.20880 0.94867 0.99540 0.97196 1.21030 0.99754 0.95296 0.98250 1.20986 0.97230 0.96196 1.00915 1.21035 0.95373 0.99691 0.98005 1.21011 0.99777 0.94240 0.97532 0.91466 0.91071 0.92546 0.90919 0.89505 0.88977 0.92162 0.92153 0.88068 0.86366 0.76789 0.94555 0.95736 0.92911 0.86723 0.86812 0.86900 0.86646 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.05 37.16 0.34 -1.01 16 2 C 0.14 1.52 3.27 -67.41 -0.22 1.30 16 3 H 0.12 1.42 7.06 -51.93 -0.37 1.05 16 4 C 0.10 0.99 5.96 -4.41 -0.03 0.96 16 5 N -0.60 -6.85 3.09 -182.65 -0.57 -7.42 16 6 C 0.07 0.65 10.43 59.85 0.62 1.27 16 7 C 0.51 7.13 7.03 -11.73 -0.08 7.05 16 8 O -0.55 -9.29 15.97 5.56 0.09 -9.20 16 9 C 0.10 1.27 5.65 -5.02 -0.03 1.24 16 10 N -0.63 -8.62 2.76 -172.18 -0.47 -9.10 16 11 C 0.71 12.44 8.30 -86.91 -0.72 11.72 16 12 O -0.59 -11.98 15.49 5.29 0.08 -11.90 16 13 N -0.71 -12.81 3.93 -59.81 -0.23 -13.04 16 14 C 0.20 4.05 2.12 -69.08 -0.15 3.90 16 15 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 16 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 17 C -0.52 -13.75 8.84 -34.44 -0.30 -14.06 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 26 C -0.11 -1.77 9.32 -39.59 -0.37 -2.13 16 27 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 28 C -0.14 -1.90 10.05 -39.59 -0.40 -2.29 16 29 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 30 C -0.11 -1.83 9.67 -39.58 -0.38 -2.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 6.82 -51.93 -0.35 0.14 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.09 1.04 6.59 -51.93 -0.34 0.69 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 1.05 7.84 -51.93 -0.41 0.64 16 40 H 0.12 1.60 5.95 -51.92 -0.31 1.29 16 41 H 0.40 6.69 6.24 -40.82 -0.25 6.43 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.11 1.79 7.71 -52.49 -0.40 1.38 16 46 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 49 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 398.93 15.07 6.01 6.01 Total: -1.00 -33.58 398.93 -10.06 -43.64 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.43 Total: 7.97 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.25 Total: 1.50 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.54 Total: -54.44 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.58 -10.06 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782596273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.308 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds