Wall clock time and date at job start Wed Apr 1 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.71647 * 2 1 4 4 C 1.53179 * 109.90828 * 239.30860 * 2 1 3 5 5 N 1.45648 * 110.66525 * 287.34704 * 4 2 1 6 6 C 1.46506 * 117.70111 * 157.96043 * 5 4 2 7 7 C 1.33374 * 124.59403 * 337.67641 * 5 4 2 8 8 O 1.21279 * 118.49390 * 184.55665 * 7 5 4 9 9 C 1.50440 * 123.01980 * 4.58075 * 7 5 4 10 10 N 1.47043 * 108.89094 * 347.28774 * 9 7 5 11 11 C 1.34780 * 121.35824 * 222.75921 * 10 9 7 12 12 O 1.21583 * 120.00409 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99636 * 0.02562 * 11 10 9 14 14 C 1.46497 * 119.99672 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47775 * 324.99935 * 14 13 11 16 16 C 1.53000 * 109.46927 * 205.00354 * 14 13 11 17 17 C 1.50703 * 109.47362 * 65.00305 * 16 14 13 18 18 H 1.08004 * 119.99746 * 359.97438 * 17 16 14 19 19 C 1.37878 * 120.00099 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47284 * 119.99662 * 21 19 17 24 24 H 1.48501 * 109.46786 * 239.99608 * 21 19 17 25 25 C 1.50702 * 109.47287 * 85.00832 * 14 13 11 26 26 C 1.38235 * 120.00098 * 39.71659 * 25 14 13 27 27 C 1.38224 * 120.00021 * 179.79325 * 26 25 14 28 28 C 1.38236 * 120.00133 * 0.44525 * 27 26 25 29 29 C 1.38229 * 119.99921 * 359.80952 * 28 27 26 30 30 C 1.38235 * 120.00232 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47262 * 299.39058 * 1 2 3 32 32 H 1.09002 * 109.46660 * 59.39414 * 1 2 3 33 33 H 1.09004 * 109.46979 * 179.38588 * 1 2 3 34 34 H 1.09006 * 109.40284 * 166.96274 * 4 2 1 35 35 H 1.08994 * 109.13850 * 47.56914 * 4 2 1 36 36 H 1.09001 * 109.47060 * 179.74072 * 6 5 4 37 37 H 1.09004 * 109.47073 * 299.73560 * 6 5 4 38 38 H 1.09000 * 109.47212 * 59.73643 * 6 5 4 39 39 H 1.08998 * 109.57181 * 107.11372 * 9 7 5 40 40 H 1.09007 * 109.56643 * 227.46911 * 9 7 5 41 41 H 0.96998 * 119.99976 * 0.02562 * 13 11 10 42 42 H 1.09006 * 109.47093 * 185.00201 * 16 14 13 43 43 H 1.09001 * 109.47145 * 304.99924 * 16 14 13 44 44 H 0.96999 * 120.00080 * 180.02562 * 20 19 17 45 45 H 1.08002 * 119.99530 * 0.02562 * 26 25 14 46 46 H 1.08005 * 119.99867 * 180.28243 * 27 26 25 47 47 H 1.08002 * 120.00046 * 179.84049 * 28 27 26 48 48 H 1.07996 * 120.00384 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.00464 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0516 -0.7351 -1.2385 5 7 1.8446 -2.1710 -1.1091 6 6 1.8130 -2.9680 -2.3380 7 6 1.6872 -2.8120 0.0498 8 8 1.6057 -4.0219 0.0354 9 6 1.6056 -2.1031 1.3742 10 7 2.0269 -0.7060 1.1932 11 6 2.8352 -0.0963 2.0828 12 8 3.1680 1.0601 1.9090 13 7 3.2747 -0.7686 3.1651 14 6 4.1538 -0.1061 4.1317 15 1 4.8177 0.5814 3.6076 16 6 4.9866 -1.1575 4.8678 17 6 5.9100 -1.8404 3.8920 18 1 5.9032 -1.5535 2.8508 19 6 6.7627 -2.8322 4.3283 20 7 6.7706 -3.1819 5.5960 21 14 7.9077 -3.6781 3.1189 22 1 7.7063 -3.1058 1.7634 23 1 9.3160 -3.4685 3.5409 24 1 7.6106 -5.1328 3.0907 25 6 3.3201 0.6605 5.1259 26 6 2.1412 0.1186 5.6029 27 6 1.3787 0.8198 6.5180 28 6 1.7903 2.0670 6.9492 29 6 2.9664 2.6112 6.4683 30 6 3.7313 1.9080 5.5565 31 1 -0.3633 0.5043 0.8954 32 1 -0.3633 0.5232 -0.8845 33 1 -0.3633 -1.0276 -0.0110 34 1 3.1167 -0.5354 -1.3564 35 1 1.5201 -0.3738 -2.1188 36 1 1.6564 -4.0170 -2.0868 37 1 0.9990 -2.6215 -2.9749 38 1 2.7599 -2.8583 -2.8667 39 1 0.5793 -2.1304 1.7403 40 1 2.2640 -2.5929 2.0917 41 1 3.0096 -1.6913 3.3035 42 1 5.5752 -0.6741 5.6476 43 1 4.3235 -1.8960 5.3184 44 1 7.3707 -3.8794 5.9030 45 1 1.8179 -0.8544 5.2633 46 1 0.4600 0.3944 6.8940 47 1 1.1932 2.6160 7.6623 48 1 3.2883 3.5854 6.8055 49 1 4.6501 2.3334 5.1805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782596273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:16 Heat of formation + Delta-G solvation = -43.477160 kcal Electronic energy + Delta-G solvation = -31470.097318 eV Core-core repulsion = 27396.676706 eV Total energy + Delta-G solvation = -4073.420613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.14700 -40.88984 -39.86033 -38.03709 -36.75149 -36.02843 -34.77062 -33.26067 -31.84139 -31.55629 -30.51664 -29.61212 -28.29892 -26.72230 -26.36138 -23.90363 -23.67445 -23.21856 -21.96649 -21.24440 -19.72571 -18.93671 -18.67430 -18.43152 -17.59641 -17.34281 -17.18455 -16.91732 -16.53661 -16.30952 -16.06065 -15.74964 -15.43052 -15.07393 -14.73092 -14.47268 -14.41389 -14.19138 -14.16691 -14.03004 -13.84002 -13.67284 -13.46822 -13.27346 -13.04330 -13.03908 -12.92489 -12.66416 -12.54323 -12.44559 -12.14487 -12.07408 -11.85581 -11.60892 -11.57235 -11.33494 -11.08631 -10.61216 -10.16370 -9.85765 -9.73147 -9.60733 -9.48374 -8.22849 -6.31962 0.53464 0.59065 1.34086 1.36190 1.36707 1.43616 1.47190 1.93764 2.16704 2.36527 2.80908 3.04135 3.12722 3.28829 3.60022 3.87252 3.99281 4.04414 4.06789 4.18823 4.23517 4.33500 4.34734 4.42292 4.43297 4.48362 4.55671 4.65615 4.67617 4.77149 4.80628 4.82765 4.91178 4.94432 5.14773 5.20640 5.21687 5.23285 5.27126 5.39637 5.43629 5.62309 5.63654 5.67034 5.74807 5.78526 5.97696 6.15788 6.22047 6.23850 6.80553 6.86332 6.97228 7.36679 7.54031 8.87984 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007078 B = 0.005022 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.780165 B = 5573.912435 C = 8540.015509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 H 0.111 0.889 4 C 0.106 3.894 5 N -0.598 5.598 6 C 0.066 3.934 7 C 0.509 3.491 8 O -0.584 6.584 9 C 0.102 3.898 10 N -0.627 5.627 11 C 0.713 3.287 12 O -0.621 6.621 13 N -0.714 5.714 14 C 0.218 3.782 15 H 0.060 0.940 16 C 0.037 3.963 17 C -0.525 4.525 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.923 5.923 21 Si 0.951 3.049 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.096 4.096 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.123 4.123 30 C -0.131 4.131 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.400 0.600 42 H 0.008 0.992 43 H 0.011 0.989 44 H 0.264 0.736 45 H 0.117 0.883 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.144 0.856 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 7.924 -10.510 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.129 0.871 4 C -0.017 4.017 5 N -0.330 5.330 6 C -0.076 4.076 7 C 0.296 3.704 8 O -0.464 6.464 9 C -0.024 4.024 10 N -0.367 5.367 11 C 0.415 3.585 12 O -0.502 6.502 13 N -0.368 5.368 14 C 0.113 3.887 15 H 0.078 0.922 16 C 0.000 4.000 17 C -0.564 4.564 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.563 5.563 21 Si 0.776 3.224 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.097 4.097 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.141 4.141 30 C -0.149 4.149 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.237 0.763 42 H 0.026 0.974 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.162 0.838 47 H 0.168 0.832 48 H 0.161 0.839 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.269 8.044 -10.513 20.974 hybrid contribution 1.214 -1.236 -0.201 1.744 sum -15.056 6.807 -10.714 19.693 Atomic orbital electron populations 1.22053 0.91935 1.02681 1.04053 1.21675 0.96038 0.97533 0.81573 0.87118 1.22036 1.01959 0.77946 0.99761 1.47168 1.69843 1.09199 1.06766 1.21952 1.03288 0.97193 0.85154 1.20377 0.75784 0.87382 0.86830 1.90727 1.52982 1.15289 1.87439 1.21796 1.04501 0.81104 0.95018 1.47431 1.51531 1.12281 1.25448 1.15836 0.78614 0.84200 0.79889 1.90843 1.63795 1.17384 1.78183 1.45160 1.52099 1.15947 1.23545 1.19609 0.88630 0.93602 0.86865 0.92227 1.19147 0.93699 0.92490 0.94689 1.21383 1.20897 1.19163 0.94914 0.93218 1.25706 0.98622 0.97632 0.96572 1.70059 1.39228 1.31323 1.15679 0.85618 0.79042 0.78408 0.79285 1.19782 1.20298 1.20418 1.20435 0.96172 0.95194 0.97931 1.21019 0.94667 1.00041 0.98074 1.21411 1.00339 0.95413 0.97077 1.21454 0.96801 0.95922 1.00496 1.21378 0.95291 1.00571 0.96862 1.21165 1.00389 0.94489 0.98886 0.92294 0.88128 0.92517 0.92043 0.85130 0.91110 0.88794 0.91155 0.85420 0.87747 0.76342 0.97356 0.97067 0.92706 0.86517 0.83759 0.83187 0.83858 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.05 71.98 0.65 -1.45 16 2 C 0.13 2.69 3.27 44.90 0.15 2.84 16 3 H 0.11 2.50 7.06 -2.39 -0.02 2.48 16 4 C 0.11 1.76 5.96 86.60 0.52 2.28 16 5 N -0.60 -12.57 3.09 -850.96 -2.63 -15.21 16 6 C 0.07 1.10 10.43 127.77 1.33 2.44 16 7 C 0.51 13.85 7.03 87.79 0.62 14.47 16 8 O -0.58 -20.03 15.97 -3.03 -0.05 -20.08 16 9 C 0.10 2.55 5.65 85.45 0.48 3.04 16 10 N -0.63 -16.96 2.76 -816.93 -2.25 -19.21 16 11 C 0.71 25.59 8.30 179.05 1.49 27.08 16 12 O -0.62 -26.15 15.49 -3.98 -0.06 -26.21 16 13 N -0.71 -26.87 3.93 -461.42 -1.81 -28.69 16 14 C 0.22 9.35 2.12 44.25 0.09 9.44 16 15 H 0.06 2.84 7.44 -2.39 -0.02 2.82 16 16 C 0.04 1.88 4.49 29.85 0.13 2.02 16 17 C -0.53 -28.98 8.84 25.60 0.23 -28.76 16 18 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 19 C 0.01 0.76 5.46 84.65 0.46 1.22 16 20 N -0.92 -54.46 13.29 21.45 0.28 -54.17 16 21 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C -0.10 -3.64 4.91 -19.86 -0.10 -3.74 16 26 C -0.12 -3.97 9.32 22.27 0.21 -3.76 16 27 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16 28 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 29 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 30 C -0.13 -4.59 9.67 22.27 0.22 -4.38 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.82 6.82 -2.39 -0.02 0.80 16 34 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.13 1.09 8.02 -2.39 -0.02 1.07 16 36 H 0.07 1.54 6.59 -2.39 -0.02 1.52 16 37 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.13 2.51 7.84 -2.39 -0.02 2.49 16 40 H 0.10 2.93 5.95 -2.38 -0.01 2.92 16 41 H 0.40 14.23 6.24 -92.71 -0.58 13.65 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.12 3.69 7.71 -2.91 -0.02 3.67 16 46 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 48 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 49 H 0.11 3.97 8.04 -2.91 -0.02 3.95 16 Total: -1.00 -75.93 398.93 3.03 -72.90 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.38 Total: 30.53 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 7.15 Total: 13.32 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -6.41 Total: -117.27 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.11 Total: -46.29 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.93 3.03 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782596273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.422 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds