Wall clock time and date at job start Wed Apr 1 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46840 * 2 1 4 4 N 1.46908 * 109.46922 * 119.99618 * 2 1 3 5 5 C 1.46905 * 110.99637 * 275.00086 * 4 2 1 6 6 C 1.50703 * 109.46598 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00159 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99806 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00512 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47375 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47422 * 120.00076 * 13 11 9 16 16 H 1.48510 * 109.47177 * 239.99891 * 13 11 9 17 17 C 1.50694 * 109.47440 * 239.99483 * 2 1 3 18 18 C 1.38281 * 119.93240 * 279.72509 * 17 2 1 19 19 C 1.38113 * 120.07116 * 179.76768 * 18 17 2 20 20 C 1.38865 * 119.92744 * 0.50248 * 19 18 17 21 21 N 1.39934 * 120.06841 * 179.72365 * 20 19 18 22 22 C 1.45757 * 117.94125 * 89.02245 * 21 20 19 23 23 C 1.53107 * 110.38288 * 160.74103 * 22 21 20 24 24 C 1.53354 * 108.52625 * 51.11507 * 23 22 21 25 25 C 1.53063 * 108.42422 * 292.30821 * 24 23 22 26 26 C 1.33346 * 117.94803 * 269.28414 * 21 20 19 27 27 O 1.21285 * 118.24762 * 2.24413 * 26 21 20 28 28 C 1.38871 * 119.86228 * 359.75177 * 20 19 18 29 29 C 1.38111 * 119.92662 * 359.97438 * 28 20 19 30 30 H 1.08994 * 109.46990 * 60.00901 * 1 2 3 31 31 H 1.09002 * 109.46994 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46986 * 300.00195 * 1 2 3 33 33 H 1.00896 * 110.99824 * 38.95631 * 4 2 1 34 34 H 1.09001 * 109.47092 * 300.00011 * 5 4 2 35 35 H 1.08992 * 109.47119 * 60.00357 * 5 4 2 36 36 H 0.97001 * 119.99927 * 359.97438 * 8 6 5 37 37 H 0.97000 * 120.00759 * 180.02562 * 12 11 9 38 38 H 1.08002 * 119.96475 * 0.02562 * 18 17 2 39 39 H 1.08000 * 120.03639 * 180.25997 * 19 18 17 40 40 H 1.08993 * 109.30078 * 281.23650 * 22 21 20 41 41 H 1.09000 * 109.30052 * 40.61520 * 22 21 20 42 42 H 1.08995 * 109.80868 * 291.32747 * 23 22 21 43 43 H 1.09001 * 109.54354 * 170.74330 * 23 22 21 44 44 H 1.08998 * 109.66896 * 172.57432 * 24 23 22 45 45 H 1.08999 * 109.67233 * 52.04362 * 24 23 22 46 46 H 1.09001 * 109.40385 * 288.77103 * 25 24 23 47 47 H 1.08998 * 109.33029 * 168.98370 * 25 24 23 48 48 H 1.07998 * 120.03460 * 180.02562 * 28 20 19 49 49 H 1.08003 * 119.96450 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 2.0824 0.2228 2.3469 6 6 2.5884 -0.5213 3.5558 7 8 2.8687 -1.6982 3.4702 8 7 2.7285 0.1209 4.7324 9 6 3.1883 -0.5561 5.8324 10 1 3.4379 -1.6041 5.7561 11 6 3.3333 0.1060 7.0453 12 7 3.0291 1.3811 7.1383 13 14 3.9605 -0.8162 8.5438 14 1 4.2289 -2.2302 8.1783 15 1 5.2139 -0.1827 9.0262 16 1 2.9366 -0.7690 9.6185 17 6 2.0324 -0.7105 -1.2303 18 6 2.0716 -2.0924 -1.2614 19 6 2.5270 -2.7466 -2.3893 20 6 2.9556 -2.0149 -3.4890 21 7 3.4230 -2.6746 -4.6311 22 6 2.4524 -3.0347 -5.6572 23 6 3.1579 -3.2947 -6.9909 24 6 4.3027 -4.2866 -6.7513 25 6 5.3697 -3.5968 -5.8978 26 6 4.7276 -2.9391 -4.7102 27 8 5.4333 -2.6325 -3.7726 28 6 2.9200 -0.6271 -3.4527 29 6 2.4581 0.0210 -2.3239 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.4495 -1.4978 1.4101 34 1 2.7588 1.0464 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5040 1.0620 4.8010 37 1 3.1306 1.8435 7.9849 38 1 1.7418 -2.6608 -0.4044 39 1 2.5534 -3.8260 -2.4146 40 1 1.9172 -3.9323 -5.3476 41 1 1.7401 -2.2190 -5.7814 42 1 3.5594 -2.3610 -7.3845 43 1 2.4489 -3.7193 -7.7017 44 1 4.7340 -4.5866 -7.7063 45 1 3.9242 -5.1641 -6.2272 46 1 5.8810 -2.8431 -6.4967 47 1 6.0918 -4.3377 -5.5548 48 1 3.2523 -0.0553 -4.3065 49 1 2.4298 1.1002 -2.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810131533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:51 Heat of formation + Delta-G solvation = -43.326023 kcal Electronic energy + Delta-G solvation = -29267.895365 eV Core-core repulsion = 25194.481306 eV Total energy + Delta-G solvation = -4073.414059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17411 -39.25550 -38.17588 -36.82944 -36.24629 -34.21148 -33.78168 -31.30562 -31.02801 -30.81411 -30.04972 -28.47302 -26.34518 -25.12065 -24.18411 -23.62158 -22.76031 -22.28552 -20.54077 -19.26989 -19.12713 -17.90224 -17.70220 -16.61822 -16.46060 -16.29675 -15.51898 -15.24216 -15.05421 -14.79052 -14.60665 -14.47085 -14.30640 -14.00584 -13.89207 -13.66474 -13.61529 -13.48201 -13.28508 -13.00234 -12.65270 -12.25629 -12.17004 -12.12660 -11.78413 -11.63210 -11.52758 -11.51170 -11.44340 -11.40467 -11.06795 -11.02489 -10.90541 -10.31435 -10.19092 -9.92257 -9.48574 -9.13443 -8.91130 -8.61083 -8.43405 -8.00171 -7.91855 -6.38450 -3.78987 1.22481 1.43166 2.40307 2.67174 3.19056 3.29383 3.37090 3.65488 3.94981 4.13917 4.19173 4.24750 4.30763 4.36240 4.38416 4.79438 4.83528 4.90516 4.93937 4.95401 5.05375 5.12754 5.21816 5.24015 5.24879 5.29068 5.30901 5.39798 5.41766 5.43424 5.54655 5.57914 5.65992 5.67915 5.72642 5.86033 6.02848 6.03523 6.05918 6.25424 6.30308 6.44051 6.51180 6.64315 6.97772 7.15491 7.27591 7.58846 7.68305 7.98108 8.10294 8.65056 9.21645 9.58141 10.09793 10.79450 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.001862 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.050480 B =15030.658269 C =15877.209999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 H 0.087 0.913 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.054 4.054 18 C -0.085 4.085 19 C -0.107 4.107 20 C 0.122 3.878 21 N -0.564 5.564 22 C 0.115 3.885 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.132 4.132 26 C 0.514 3.486 27 O -0.534 6.534 28 C -0.110 4.110 29 C -0.109 4.109 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.350 0.650 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.118 0.882 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -4.495 -30.892 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.105 0.895 4 N -0.292 5.292 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.055 4.055 18 C -0.104 4.104 19 C -0.127 4.127 20 C 0.032 3.968 21 N -0.295 5.295 22 C -0.007 4.007 23 C -0.173 4.173 24 C -0.163 4.163 25 C -0.172 4.172 26 C 0.302 3.698 27 O -0.409 6.409 28 C -0.129 4.129 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.136 0.864 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.283 -4.960 -30.468 31.164 hybrid contribution -0.745 0.355 1.019 1.311 sum -5.028 -4.605 -29.448 30.227 Atomic orbital electron populations 1.22507 0.96330 1.02538 1.02337 1.20497 0.92539 0.97485 0.88613 0.89485 1.60176 1.57654 1.09058 1.02326 1.21706 0.99935 0.95738 0.90784 1.19812 0.85086 0.88246 0.84153 1.90527 1.55177 1.16297 1.84586 1.41865 1.57895 1.12465 1.07936 1.19758 1.39758 0.96468 0.86723 0.87879 1.25257 0.97731 0.95790 0.99254 1.69619 1.48872 1.08855 1.27053 0.85800 0.78224 0.79655 0.80668 1.19224 1.20756 1.20811 1.19853 0.97429 0.93797 0.94374 1.20859 0.98530 0.94038 0.96943 1.21201 0.99015 0.99754 0.92701 1.17465 1.00769 0.90862 0.87659 1.44890 1.07276 1.58428 1.18914 1.21517 0.91033 1.01206 0.86973 1.21933 0.98511 1.00498 0.96384 1.21682 0.95578 0.98486 1.00509 1.21663 0.99103 1.01448 0.94975 1.20314 0.81365 0.78940 0.89136 1.90810 1.60205 1.51839 1.38055 1.21078 1.00123 0.93123 0.98618 1.20836 0.99511 0.99706 0.92742 0.91990 0.92152 0.92036 0.83015 0.89546 0.93739 0.77478 0.91973 0.85340 0.86279 0.91400 0.90439 0.90772 0.89543 0.90375 0.90945 0.88199 0.88024 0.86391 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.14 37.16 0.34 -1.56 16 2 C 0.12 1.53 2.79 -68.86 -0.19 1.34 16 3 H 0.09 1.06 7.66 -51.93 -0.40 0.67 16 4 N -0.66 -11.00 5.32 -109.22 -0.58 -11.58 16 5 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 6 C 0.44 10.69 7.82 -10.99 -0.09 10.60 16 7 O -0.58 -16.23 15.78 5.55 0.09 -16.14 16 8 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 9 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 10 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 13 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.05 -0.70 4.96 -104.59 -0.52 -1.22 16 18 C -0.08 -1.15 9.32 -39.61 -0.37 -1.52 16 19 C -0.11 -1.39 9.97 -39.40 -0.39 -1.79 16 20 C 0.12 1.50 4.01 -83.69 -0.34 1.17 16 21 N -0.56 -5.72 2.84 -114.54 -0.33 -6.05 16 22 C 0.11 0.70 6.35 -4.39 -0.03 0.67 16 23 C -0.14 -0.52 6.03 -26.49 -0.16 -0.68 16 24 C -0.12 -0.54 6.03 -26.52 -0.16 -0.70 16 25 C -0.13 -0.93 6.03 -28.10 -0.17 -1.10 16 26 C 0.51 6.02 7.44 -11.87 -0.09 5.93 16 27 O -0.53 -9.12 16.71 5.55 0.09 -9.02 16 28 C -0.11 -1.30 9.97 -39.39 -0.39 -1.70 16 29 C -0.11 -1.29 9.66 -39.61 -0.38 -1.67 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 33 H 0.35 5.91 7.51 -39.29 -0.30 5.61 16 34 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 35 H 0.04 0.71 7.43 -51.93 -0.39 0.32 16 36 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.13 1.74 7.23 -52.49 -0.38 1.36 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 49 H 0.12 1.20 8.03 -52.48 -0.42 0.78 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -35.97 404.69 -9.78 -45.75 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -7.59 Total: 12.86 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.21 Total: 0.52 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.24 Total: -56.51 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.18 Total: -25.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.97 -9.78 -45.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810131533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.421 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds