Wall clock time and date at job start Wed Apr 1 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46840 * 2 1 4 4 N 1.46908 * 109.46922 * 119.99618 * 2 1 3 5 5 C 1.46905 * 110.99637 * 275.00086 * 4 2 1 6 6 C 1.50703 * 109.46598 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00159 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99806 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00512 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47375 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47422 * 120.00076 * 13 11 9 16 16 H 1.48510 * 109.47177 * 239.99891 * 13 11 9 17 17 C 1.50694 * 109.47440 * 239.99483 * 2 1 3 18 18 C 1.38281 * 119.93240 * 279.72509 * 17 2 1 19 19 C 1.38113 * 120.07116 * 179.76768 * 18 17 2 20 20 C 1.38865 * 119.92744 * 0.50248 * 19 18 17 21 21 N 1.39934 * 120.06841 * 179.72365 * 20 19 18 22 22 C 1.45757 * 117.94125 * 89.02245 * 21 20 19 23 23 C 1.53107 * 110.38288 * 160.74103 * 22 21 20 24 24 C 1.53354 * 108.52625 * 51.11507 * 23 22 21 25 25 C 1.53063 * 108.42422 * 292.30821 * 24 23 22 26 26 C 1.33346 * 117.94803 * 269.28414 * 21 20 19 27 27 O 1.21285 * 118.24762 * 2.24413 * 26 21 20 28 28 C 1.38871 * 119.86228 * 359.75177 * 20 19 18 29 29 C 1.38111 * 119.92662 * 359.97438 * 28 20 19 30 30 H 1.08994 * 109.46990 * 60.00901 * 1 2 3 31 31 H 1.09002 * 109.46994 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46986 * 300.00195 * 1 2 3 33 33 H 1.00896 * 110.99824 * 38.95631 * 4 2 1 34 34 H 1.09001 * 109.47092 * 300.00011 * 5 4 2 35 35 H 1.08992 * 109.47119 * 60.00357 * 5 4 2 36 36 H 0.97001 * 119.99927 * 359.97438 * 8 6 5 37 37 H 0.97000 * 120.00759 * 180.02562 * 12 11 9 38 38 H 1.08002 * 119.96475 * 0.02562 * 18 17 2 39 39 H 1.08000 * 120.03639 * 180.25997 * 19 18 17 40 40 H 1.08993 * 109.30078 * 281.23650 * 22 21 20 41 41 H 1.09000 * 109.30052 * 40.61520 * 22 21 20 42 42 H 1.08995 * 109.80868 * 291.32747 * 23 22 21 43 43 H 1.09001 * 109.54354 * 170.74330 * 23 22 21 44 44 H 1.08998 * 109.66896 * 172.57432 * 24 23 22 45 45 H 1.08999 * 109.67233 * 52.04362 * 24 23 22 46 46 H 1.09001 * 109.40385 * 288.77103 * 25 24 23 47 47 H 1.08998 * 109.33029 * 168.98370 * 25 24 23 48 48 H 1.07998 * 120.03460 * 180.02562 * 28 20 19 49 49 H 1.08003 * 119.96450 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 2.0824 0.2228 2.3469 6 6 2.5884 -0.5213 3.5558 7 8 2.8687 -1.6982 3.4702 8 7 2.7285 0.1209 4.7324 9 6 3.1883 -0.5561 5.8324 10 1 3.4379 -1.6041 5.7561 11 6 3.3333 0.1060 7.0453 12 7 3.0291 1.3811 7.1383 13 14 3.9605 -0.8162 8.5438 14 1 4.2289 -2.2302 8.1783 15 1 5.2139 -0.1827 9.0262 16 1 2.9366 -0.7690 9.6185 17 6 2.0324 -0.7105 -1.2303 18 6 2.0716 -2.0924 -1.2614 19 6 2.5270 -2.7466 -2.3893 20 6 2.9556 -2.0149 -3.4890 21 7 3.4230 -2.6746 -4.6311 22 6 2.4524 -3.0347 -5.6572 23 6 3.1579 -3.2947 -6.9909 24 6 4.3027 -4.2866 -6.7513 25 6 5.3697 -3.5968 -5.8978 26 6 4.7276 -2.9391 -4.7102 27 8 5.4333 -2.6325 -3.7726 28 6 2.9200 -0.6271 -3.4527 29 6 2.4581 0.0210 -2.3239 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.4495 -1.4978 1.4101 34 1 2.7588 1.0464 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5040 1.0620 4.8010 37 1 3.1306 1.8435 7.9849 38 1 1.7418 -2.6608 -0.4044 39 1 2.5534 -3.8260 -2.4146 40 1 1.9172 -3.9323 -5.3476 41 1 1.7401 -2.2190 -5.7814 42 1 3.5594 -2.3610 -7.3845 43 1 2.4489 -3.7193 -7.7017 44 1 4.7340 -4.5866 -7.7063 45 1 3.9242 -5.1641 -6.2272 46 1 5.8810 -2.8431 -6.4967 47 1 6.0918 -4.3377 -5.5548 48 1 3.2523 -0.0553 -4.3065 49 1 2.4298 1.1002 -2.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810131533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:49 Heat of formation + Delta-G solvation = -67.579165 kcal Electronic energy + Delta-G solvation = -29268.947060 eV Core-core repulsion = 25194.481306 eV Total energy + Delta-G solvation = -4074.465754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.00528 -40.42744 -39.84993 -37.78062 -37.25090 -35.95201 -34.88821 -33.29948 -32.12871 -31.90949 -30.66661 -29.39228 -27.98879 -26.01002 -25.55303 -24.56447 -23.70234 -23.04866 -21.49223 -21.13268 -19.94223 -19.81246 -18.57262 -17.99594 -17.36007 -17.25869 -16.92374 -16.41232 -16.29017 -16.15446 -15.83107 -15.58025 -15.26662 -15.13257 -15.01211 -14.66130 -14.54111 -14.33346 -14.26184 -14.24552 -13.96158 -13.54156 -13.44909 -13.23467 -13.02945 -12.80771 -12.76465 -12.54081 -12.42217 -12.27523 -12.13527 -12.07227 -11.90997 -11.87363 -11.76763 -11.52757 -10.78515 -10.37395 -10.02515 -9.96518 -9.88366 -9.59873 -9.28412 -8.47950 -5.96605 0.25382 0.45198 1.35281 1.40403 1.52681 1.54824 1.92949 2.04135 2.28051 2.66650 2.97423 3.19186 3.52655 3.63817 3.80495 3.86741 3.89020 3.91635 3.92732 4.01710 4.21828 4.28451 4.35325 4.40023 4.44647 4.45680 4.52131 4.54276 4.60244 4.64715 4.73034 4.81022 4.89050 4.89650 4.94335 5.07574 5.07723 5.11923 5.20487 5.31036 5.34891 5.39946 5.49471 5.58142 5.60398 5.91756 6.04293 6.14106 6.37357 6.38467 6.59259 7.11679 7.12315 7.55107 8.10936 8.69655 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.001862 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.050480 B =15030.658269 C =15877.209999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 H 0.099 0.901 4 N -0.679 5.679 5 C 0.067 3.933 6 C 0.437 3.563 7 O -0.625 6.625 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.275 1.275 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.066 4.066 18 C -0.099 4.099 19 C -0.123 4.123 20 C 0.113 3.887 21 N -0.559 5.559 22 C 0.106 3.894 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.127 4.127 26 C 0.505 3.495 27 O -0.600 6.600 28 C -0.116 4.116 29 C -0.107 4.107 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.345 0.655 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.134 0.866 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 -3.635 -32.985 33.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.117 0.883 4 N -0.311 5.311 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.817 3.183 14 H -0.200 1.200 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.066 4.066 18 C -0.118 4.118 19 C -0.142 4.142 20 C 0.023 3.977 21 N -0.289 5.289 22 C -0.015 4.015 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.167 4.167 26 C 0.296 3.704 27 O -0.481 6.481 28 C -0.135 4.135 29 C -0.126 4.126 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.133 0.867 47 H 0.118 0.882 48 H 0.152 0.848 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.132 -4.074 -32.611 33.262 hybrid contribution -0.520 0.070 1.594 1.678 sum -5.652 -4.004 -31.017 31.780 Atomic orbital electron populations 1.22422 0.94441 1.02694 1.03355 1.20562 0.94024 0.97420 0.86664 0.88285 1.60147 1.58790 1.09258 1.02948 1.21554 1.01345 0.95222 0.88399 1.20926 0.83424 0.88015 0.85212 1.90495 1.56666 1.18507 1.85472 1.41922 1.58316 1.12628 1.08137 1.19692 1.42177 0.95919 0.88577 0.90530 1.26035 0.97226 0.96659 1.01358 1.69672 1.48606 1.09620 1.28115 0.84872 0.78224 0.77950 0.77281 1.20000 1.19614 1.19347 1.19950 0.98124 0.93573 0.94998 1.20892 0.99354 0.94679 0.96918 1.21293 0.99812 0.99967 0.93154 1.17700 1.00131 0.91501 0.88326 1.45096 1.07574 1.57301 1.18914 1.21846 0.90671 1.01821 0.87135 1.21955 0.98655 1.00732 0.95249 1.21698 0.94898 0.98118 1.00952 1.21716 0.99736 1.01653 0.93559 1.21223 0.81429 0.78095 0.89606 1.90773 1.61823 1.54846 1.40684 1.21325 0.99834 0.93040 0.99298 1.21115 0.98428 1.00943 0.92117 0.89979 0.92502 0.91871 0.83592 0.87901 0.90912 0.76892 0.91268 0.86296 0.86314 0.90741 0.89509 0.90391 0.86841 0.87832 0.91196 0.86699 0.88219 0.84774 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.14 71.98 0.66 -2.67 16 2 C 0.12 3.00 2.79 44.17 0.12 3.12 16 3 H 0.10 2.18 7.66 -2.39 -0.02 2.17 16 4 N -0.68 -22.56 5.32 -499.45 -2.66 -25.21 16 5 C 0.07 2.36 5.97 85.56 0.51 2.87 16 6 C 0.44 21.54 7.82 87.66 0.69 22.23 16 7 O -0.62 -36.16 15.78 -3.06 -0.05 -36.21 16 8 N -0.57 -30.21 5.29 -306.98 -1.62 -31.84 16 9 C -0.33 -19.53 9.68 84.04 0.81 -18.72 16 10 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 12 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 13 Si 0.99 44.05 29.55 68.60 2.03 46.07 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 C -0.07 -1.69 4.96 -19.85 -0.10 -1.78 16 18 C -0.10 -2.79 9.32 22.25 0.21 -2.58 16 19 C -0.12 -3.33 9.97 22.39 0.22 -3.10 16 20 C 0.11 2.81 4.01 38.15 0.15 2.96 16 21 N -0.56 -11.12 2.84 -635.48 -1.81 -12.92 16 22 C 0.11 1.10 6.35 86.56 0.55 1.64 16 23 C -0.13 -0.59 6.03 30.75 0.19 -0.41 16 24 C -0.12 -0.72 6.03 30.73 0.19 -0.53 16 25 C -0.13 -1.65 6.03 29.71 0.18 -1.47 16 26 C 0.51 11.93 7.44 87.72 0.65 12.58 16 27 O -0.60 -21.47 16.71 -3.04 -0.05 -21.52 16 28 C -0.12 -2.65 9.97 22.39 0.22 -2.42 16 29 C -0.11 -2.40 9.66 22.25 0.21 -2.18 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 33 H 0.34 11.92 7.51 -89.70 -0.67 11.25 16 34 H 0.10 3.31 8.06 -2.39 -0.02 3.29 16 35 H 0.07 2.17 7.43 -2.39 -0.02 2.16 16 36 H 0.40 19.74 7.90 -92.71 -0.73 19.00 16 37 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.12 3.45 7.23 -2.91 -0.02 3.43 16 39 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 42 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 43 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.10 0.17 8.14 -2.39 -0.02 0.16 16 45 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 49 H 0.15 2.50 8.03 -2.91 -0.02 2.48 16 Total: -1.00 -81.26 404.69 1.62 -79.64 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -0.43 Total: 42.80 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.93 Total: 9.28 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.80 Total: -120.06 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.10 Total: -57.73 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.26 1.62 -79.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810131533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.057 kcal (2) G-P(sol) polarization free energy of solvation -81.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds