Wall clock time and date at job start Wed Apr 1 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 5 5 C 1.34773 * 119.99968 * 275.00042 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 H 1.08999 * 109.46628 * 39.72758 * 7 5 4 9 9 N 1.46899 * 109.47157 * 159.72600 * 7 5 4 10 10 C 1.53004 * 109.47045 * 279.72827 * 7 5 4 11 11 C 1.52996 * 109.46891 * 174.99814 * 10 7 5 12 12 C 1.50706 * 109.46583 * 179.97438 * 11 10 7 13 13 H 1.07992 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00678 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46921 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47486 * 120.00306 * 16 14 12 19 19 H 1.48504 * 109.47048 * 240.00641 * 16 14 12 20 20 C 1.50698 * 109.47696 * 239.99573 * 2 1 3 21 21 C 1.38297 * 120.08510 * 280.00400 * 20 2 1 22 22 C 1.37944 * 120.37515 * 179.97438 * 21 20 2 23 23 C 1.39367 * 120.12585 * 359.97438 * 22 21 20 24 24 C 1.38895 * 118.94883 * 0.02562 * 23 22 21 25 25 C 1.37679 * 120.80890 * 359.74722 * 24 23 22 26 26 C 1.51140 * 106.34003 * 179.97438 * 24 23 22 27 27 C 1.51385 * 104.07090 * 359.97438 * 26 24 23 28 28 O 1.21283 * 126.44660 * 180.02562 * 27 26 24 29 29 N 1.34381 * 107.11162 * 0.02562 * 27 26 24 30 30 C 1.46505 * 123.87278 * 179.97438 * 29 27 26 31 31 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 33 33 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 34 34 H 0.96998 * 119.99507 * 95.00898 * 4 2 1 35 35 H 1.00901 * 111.00061 * 60.00560 * 9 7 5 36 36 H 1.00900 * 110.99360 * 183.95164 * 9 7 5 37 37 H 1.09001 * 109.46815 * 295.00119 * 10 7 5 38 38 H 1.09001 * 109.47178 * 54.99385 * 10 7 5 39 39 H 1.08998 * 109.47134 * 299.99785 * 11 10 7 40 40 H 1.08994 * 109.47132 * 60.00298 * 11 10 7 41 41 H 0.96996 * 120.00507 * 179.97438 * 15 14 12 42 42 H 1.08002 * 119.81458 * 359.97438 * 21 20 2 43 43 H 1.07993 * 119.93408 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.04531 * 180.25763 * 25 24 23 45 45 H 1.09003 * 110.50615 * 241.35768 * 26 24 23 46 46 H 1.09001 * 110.62796 * 118.70479 * 26 24 23 47 47 H 1.09000 * 109.47150 * 269.99613 * 30 29 27 48 48 H 1.08997 * 109.47229 * 29.99996 * 30 29 27 49 49 H 1.09002 * 109.46399 * 150.00234 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8632 1.1599 2.4104 7 6 2.6497 -0.7282 3.5877 8 1 3.4529 -1.4110 3.3103 9 7 3.1567 0.2590 4.5500 10 6 1.5047 -1.5192 4.2237 11 6 2.0420 -2.3384 5.3989 12 6 0.9140 -3.1169 6.0257 13 1 -0.0857 -3.0358 5.6256 14 6 1.1589 -3.9335 7.1093 15 7 2.3765 -4.0326 7.5963 16 14 -0.2390 -4.8990 7.8859 17 1 -1.5013 -4.6157 7.1566 18 1 0.0606 -6.3516 7.8100 19 1 -0.3876 -4.4978 9.3079 20 6 2.0325 -0.7105 -1.2303 21 6 2.0676 -2.0925 -1.2671 22 6 2.5259 -2.7490 -2.3904 23 6 2.9570 -2.0219 -3.4984 24 6 2.9168 -0.6344 -3.4492 25 6 2.4546 0.0183 -2.3285 26 6 3.4410 -0.1463 -4.7801 27 6 3.7629 -1.4170 -5.5373 28 8 4.2134 -1.4917 -6.6609 29 7 3.4557 -2.4467 -4.7304 30 6 3.6248 -3.8538 -5.1017 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1528 35 1 2.4304 0.9040 4.8230 36 1 3.5584 -0.1954 5.3564 37 1 0.7408 -0.8286 4.5811 38 1 1.0702 -2.1894 3.4820 39 1 2.8058 -3.0288 5.0414 40 1 2.4764 -1.6681 6.1405 41 1 2.5487 -4.6068 8.3588 42 1 1.7344 -2.6611 -0.4114 43 1 2.5507 -3.8284 -2.4112 44 1 2.4247 1.0976 -2.3051 45 1 4.3410 0.4525 -4.6396 46 1 2.6787 0.4291 -5.3054 47 1 2.7125 -4.2168 -5.5750 48 1 4.4578 -3.9482 -5.7983 49 1 3.8298 -4.4432 -4.2080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818111635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:57 Heat of formation + Delta-G solvation = -47.208554 kcal Electronic energy + Delta-G solvation = -29354.948493 eV Core-core repulsion = 25281.366075 eV Total energy + Delta-G solvation = -4073.582418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95041 -40.01019 -38.89039 -36.97891 -35.56112 -34.83576 -33.37764 -32.87775 -31.54920 -29.91401 -29.72857 -28.26111 -27.05690 -26.54917 -24.39199 -23.39529 -22.62702 -21.19459 -20.77730 -20.34056 -19.78912 -17.66243 -17.56122 -17.23957 -16.78299 -16.29038 -16.20232 -15.53938 -14.92496 -14.81128 -14.60730 -14.46513 -14.42000 -14.17004 -14.09128 -13.85978 -13.73607 -13.50837 -13.26461 -13.13999 -13.07529 -12.85657 -12.62742 -12.44210 -12.15134 -11.96961 -11.71703 -11.56104 -11.11682 -11.10932 -10.96170 -10.69567 -10.68917 -10.55318 -10.02278 -9.93665 -9.31469 -9.29863 -9.22431 -9.06490 -8.47186 -8.29294 -8.19085 -6.11436 -4.14551 0.69703 0.90233 2.00302 2.27381 2.91272 3.14280 3.23704 3.32019 3.35491 3.38093 3.66397 3.91921 4.31216 4.36734 4.41612 4.54348 4.70026 4.82041 4.86345 4.92535 4.94227 5.01052 5.12713 5.15036 5.17209 5.22549 5.24965 5.30743 5.45619 5.53182 5.56474 5.61481 5.74291 5.77902 5.85108 6.07713 6.09382 6.16633 6.25748 6.28400 6.48626 6.55392 6.62825 6.84707 7.40935 7.43059 7.49384 7.58471 7.67545 7.85731 7.89195 8.28175 8.44242 8.91787 9.50550 10.99427 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.002044 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.969791 B =13693.990802 C =14758.722894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.188 3.812 3 H 0.096 0.904 4 N -0.730 5.730 5 C 0.528 3.472 6 O -0.537 6.537 7 C 0.074 3.926 8 H 0.096 0.904 9 N -0.831 5.831 10 C -0.137 4.137 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.105 4.105 21 C -0.076 4.076 22 C -0.130 4.130 23 C 0.139 3.861 24 C -0.140 4.140 25 C -0.053 4.053 26 C -0.113 4.113 27 C 0.525 3.475 28 O -0.505 6.505 29 N -0.553 5.553 30 C 0.077 3.923 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 4.153 -24.198 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.084 3.916 3 H 0.114 0.886 4 N -0.384 5.384 5 C 0.315 3.685 6 O -0.412 6.412 7 C -0.041 4.041 8 H 0.114 0.886 9 N -0.363 5.363 10 C -0.177 4.177 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.107 4.107 21 C -0.095 4.095 22 C -0.150 4.150 23 C 0.044 3.956 24 C -0.143 4.143 25 C -0.072 4.072 26 C -0.152 4.152 27 C 0.315 3.685 28 O -0.380 6.380 29 N -0.276 5.276 30 C -0.065 4.065 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.601 5.012 -25.333 25.874 hybrid contribution -1.347 -1.811 1.140 2.529 sum 0.254 3.201 -24.193 24.405 Atomic orbital electron populations 1.22184 0.94198 1.02623 1.02718 1.19644 0.94126 0.96668 0.81201 0.88586 1.46164 1.68796 1.14167 1.09297 1.20885 0.76276 0.87068 0.84229 1.90632 1.49660 1.16008 1.84942 1.21481 0.98428 0.93271 0.90913 0.88638 1.58744 1.38325 1.19686 1.19521 1.22377 0.96415 0.98749 1.00121 1.19108 0.96573 0.94279 0.91388 1.21213 0.94896 1.25958 1.14044 0.92664 1.25019 0.95587 0.96844 0.96919 1.69953 1.19579 1.38957 1.24673 0.86538 0.82451 0.79791 0.79239 1.19762 1.20960 1.20945 1.19849 1.01450 0.93743 0.95650 1.20731 0.97638 0.93768 0.97367 1.20332 1.03210 0.99870 0.91630 1.18179 0.97539 0.93462 0.86438 1.19707 1.05424 0.92752 0.96371 1.20074 0.96401 1.00092 0.90624 1.21053 1.04247 0.97039 0.92863 1.20678 0.76597 0.86166 0.85084 1.90789 1.44122 1.86096 1.17007 1.45756 1.60026 1.08016 1.13792 1.21851 1.03058 0.79393 1.02167 0.92129 0.91420 0.91672 0.76471 0.84135 0.83056 0.92662 0.92560 0.96346 0.96390 0.92924 0.84841 0.85367 0.84925 0.85798 0.85825 0.91450 0.89796 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.46 37.16 0.35 -1.19 16 2 C 0.19 1.89 2.78 -69.08 -0.19 1.70 16 3 H 0.10 1.08 7.44 -51.93 -0.39 0.69 16 4 N -0.73 -8.48 5.03 -54.93 -0.28 -8.75 16 5 C 0.53 8.11 7.04 -10.98 -0.08 8.04 16 6 O -0.54 -9.79 15.91 5.56 0.09 -9.70 16 7 C 0.07 1.20 3.21 -68.86 -0.22 0.98 16 8 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 9 N -0.83 -13.84 8.94 -5.65 -0.05 -13.89 16 10 C -0.14 -2.56 4.78 -26.73 -0.13 -2.68 16 11 C 0.02 0.56 4.74 -27.88 -0.13 0.42 16 12 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.11 -0.88 4.96 -104.54 -0.52 -1.40 16 21 C -0.08 -0.59 9.04 -39.67 -0.36 -0.95 16 22 C -0.13 -0.96 9.74 -39.27 -0.38 -1.34 16 23 C 0.14 1.14 6.69 -83.69 -0.56 0.58 16 24 C -0.14 -1.07 6.35 -104.37 -0.66 -1.74 16 25 C -0.05 -0.40 9.66 -39.73 -0.38 -0.78 16 26 C -0.11 -0.75 6.88 -28.48 -0.20 -0.95 16 27 C 0.53 4.99 8.23 -10.83 -0.09 4.90 16 28 O -0.51 -6.39 17.67 5.55 0.10 -6.29 16 29 N -0.55 -4.62 3.13 -120.62 -0.38 -4.99 16 30 C 0.08 0.46 10.77 59.85 0.64 1.11 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.40 3.93 6.87 -40.82 -0.28 3.65 16 35 H 0.35 5.83 8.58 -39.29 -0.34 5.50 16 36 H 0.35 5.94 7.55 -39.29 -0.30 5.65 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 0.89 6.91 -52.49 -0.36 0.53 16 43 H 0.13 0.72 7.70 -52.49 -0.40 0.32 16 44 H 0.13 0.79 8.04 -52.49 -0.42 0.36 16 45 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.52 7.95 -51.93 -0.41 0.11 16 49 H 0.08 0.35 7.61 -51.93 -0.40 -0.04 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -33.55 406.73 -9.41 -42.96 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.42 Total: 9.64 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.32 Total: -6.11 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.03 Total: -52.50 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.19 Total: -15.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.55 -9.41 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818111635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.247 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds