Wall clock time and date at job start Wed Apr 1 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 5 5 C 1.34773 * 119.99968 * 275.00042 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 H 1.08999 * 109.46628 * 39.72758 * 7 5 4 9 9 N 1.46899 * 109.47157 * 159.72600 * 7 5 4 10 10 C 1.53004 * 109.47045 * 279.72827 * 7 5 4 11 11 C 1.52996 * 109.46891 * 174.99814 * 10 7 5 12 12 C 1.50706 * 109.46583 * 179.97438 * 11 10 7 13 13 H 1.07992 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00678 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46921 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47486 * 120.00306 * 16 14 12 19 19 H 1.48504 * 109.47048 * 240.00641 * 16 14 12 20 20 C 1.50698 * 109.47696 * 239.99573 * 2 1 3 21 21 C 1.38297 * 120.08510 * 280.00400 * 20 2 1 22 22 C 1.37944 * 120.37515 * 179.97438 * 21 20 2 23 23 C 1.39367 * 120.12585 * 359.97438 * 22 21 20 24 24 C 1.38895 * 118.94883 * 0.02562 * 23 22 21 25 25 C 1.37679 * 120.80890 * 359.74722 * 24 23 22 26 26 C 1.51140 * 106.34003 * 179.97438 * 24 23 22 27 27 C 1.51385 * 104.07090 * 359.97438 * 26 24 23 28 28 O 1.21283 * 126.44660 * 180.02562 * 27 26 24 29 29 N 1.34381 * 107.11162 * 0.02562 * 27 26 24 30 30 C 1.46505 * 123.87278 * 179.97438 * 29 27 26 31 31 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 33 33 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 34 34 H 0.96998 * 119.99507 * 95.00898 * 4 2 1 35 35 H 1.00901 * 111.00061 * 60.00560 * 9 7 5 36 36 H 1.00900 * 110.99360 * 183.95164 * 9 7 5 37 37 H 1.09001 * 109.46815 * 295.00119 * 10 7 5 38 38 H 1.09001 * 109.47178 * 54.99385 * 10 7 5 39 39 H 1.08998 * 109.47134 * 299.99785 * 11 10 7 40 40 H 1.08994 * 109.47132 * 60.00298 * 11 10 7 41 41 H 0.96996 * 120.00507 * 179.97438 * 15 14 12 42 42 H 1.08002 * 119.81458 * 359.97438 * 21 20 2 43 43 H 1.07993 * 119.93408 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.04531 * 180.25763 * 25 24 23 45 45 H 1.09003 * 110.50615 * 241.35768 * 26 24 23 46 46 H 1.09001 * 110.62796 * 118.70479 * 26 24 23 47 47 H 1.09000 * 109.47150 * 269.99613 * 30 29 27 48 48 H 1.08997 * 109.47229 * 29.99996 * 30 29 27 49 49 H 1.09002 * 109.46399 * 150.00234 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8632 1.1599 2.4104 7 6 2.6497 -0.7282 3.5877 8 1 3.4529 -1.4110 3.3103 9 7 3.1567 0.2590 4.5500 10 6 1.5047 -1.5192 4.2237 11 6 2.0420 -2.3384 5.3989 12 6 0.9140 -3.1169 6.0257 13 1 -0.0857 -3.0358 5.6256 14 6 1.1589 -3.9335 7.1093 15 7 2.3765 -4.0326 7.5963 16 14 -0.2390 -4.8990 7.8859 17 1 -1.5013 -4.6157 7.1566 18 1 0.0606 -6.3516 7.8100 19 1 -0.3876 -4.4978 9.3079 20 6 2.0325 -0.7105 -1.2303 21 6 2.0676 -2.0925 -1.2671 22 6 2.5259 -2.7490 -2.3904 23 6 2.9570 -2.0219 -3.4984 24 6 2.9168 -0.6344 -3.4492 25 6 2.4546 0.0183 -2.3285 26 6 3.4410 -0.1463 -4.7801 27 6 3.7629 -1.4170 -5.5373 28 8 4.2134 -1.4917 -6.6609 29 7 3.4557 -2.4467 -4.7304 30 6 3.6248 -3.8538 -5.1017 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1528 35 1 2.4304 0.9040 4.8230 36 1 3.5584 -0.1954 5.3564 37 1 0.7408 -0.8286 4.5811 38 1 1.0702 -2.1894 3.4820 39 1 2.8058 -3.0288 5.0414 40 1 2.4764 -1.6681 6.1405 41 1 2.5487 -4.6068 8.3588 42 1 1.7344 -2.6611 -0.4114 43 1 2.5507 -3.8284 -2.4112 44 1 2.4247 1.0976 -2.3051 45 1 4.3410 0.4525 -4.6396 46 1 2.6787 0.4291 -5.3054 47 1 2.7125 -4.2168 -5.5750 48 1 4.4578 -3.9482 -5.7983 49 1 3.8298 -4.4432 -4.2080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818111635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:56 Heat of formation + Delta-G solvation = -69.461009 kcal Electronic energy + Delta-G solvation = -29355.913432 eV Core-core repulsion = 25281.366075 eV Total energy + Delta-G solvation = -4074.547357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.57016 -41.08956 -39.70772 -37.83878 -36.96863 -35.75382 -34.80730 -33.95644 -32.39627 -31.64767 -30.41772 -28.89486 -28.10785 -27.57976 -25.86508 -24.40472 -23.24666 -22.50353 -21.62254 -21.24065 -20.93928 -18.94821 -18.22317 -18.12980 -17.99906 -17.40629 -17.10585 -16.62460 -16.34657 -15.98688 -15.69221 -15.55319 -15.35433 -15.08160 -14.76842 -14.73185 -14.63930 -14.48566 -14.39578 -14.06038 -14.03146 -13.85254 -13.49937 -13.37259 -13.34063 -13.04199 -12.92945 -12.72019 -12.64594 -12.47883 -12.22842 -11.78473 -11.76464 -11.67613 -11.34907 -11.26560 -11.25721 -10.68629 -10.54594 -10.10517 -9.84501 -9.60160 -8.91277 -8.19705 -6.29542 0.06633 0.34208 1.32943 1.39686 1.41786 1.53019 1.68095 1.70311 2.16913 2.41411 2.73156 3.05642 3.14203 3.35566 3.66099 3.79613 3.80667 3.88580 4.03158 4.13692 4.18102 4.27418 4.29204 4.33781 4.40734 4.45069 4.47530 4.52019 4.71111 4.71363 4.73984 4.81324 4.87247 4.91075 4.95127 5.08056 5.13286 5.22969 5.32804 5.40847 5.50126 5.53272 5.65036 5.69096 5.70291 5.83664 6.02789 6.11901 6.23805 6.51240 6.58073 6.76667 6.86707 7.29264 7.39569 8.91114 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.002044 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.969791 B =13693.990802 C =14758.722894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.191 3.809 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.531 3.469 6 O -0.568 6.568 7 C 0.079 3.921 8 H 0.108 0.892 9 N -0.831 5.831 10 C -0.120 4.120 11 C 0.029 3.971 12 C -0.541 4.541 13 H 0.056 0.944 14 C 0.004 3.996 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.282 1.282 20 C -0.110 4.110 21 C -0.080 4.080 22 C -0.128 4.128 23 C 0.126 3.874 24 C -0.141 4.141 25 C -0.053 4.053 26 C -0.107 4.107 27 C 0.516 3.484 28 O -0.547 6.547 29 N -0.555 5.555 30 C 0.070 3.930 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.410 0.590 35 H 0.344 0.656 36 H 0.352 0.648 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.263 0.737 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 3.611 -25.039 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.087 3.913 3 H 0.104 0.896 4 N -0.368 5.368 5 C 0.317 3.683 6 O -0.446 6.446 7 C -0.036 4.036 8 H 0.126 0.874 9 N -0.362 5.362 10 C -0.160 4.160 11 C -0.008 4.008 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.208 1.208 20 C -0.111 4.111 21 C -0.099 4.099 22 C -0.148 4.148 23 C 0.031 3.969 24 C -0.144 4.144 25 C -0.072 4.072 26 C -0.146 4.146 27 C 0.307 3.693 28 O -0.425 6.425 29 N -0.276 5.276 30 C -0.071 4.071 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.072 0.928 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.157 0.843 46 H 0.161 0.839 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.668 4.437 -26.186 26.567 hybrid contribution -1.047 -1.666 1.382 2.404 sum -0.379 2.772 -24.804 24.961 Atomic orbital electron populations 1.22142 0.93779 1.02947 1.02426 1.19672 0.94386 0.96197 0.81061 0.89645 1.46067 1.67381 1.14583 1.08789 1.20626 0.76174 0.86621 0.84836 1.90623 1.51212 1.17278 1.85514 1.21433 0.97753 0.93177 0.91244 0.87424 1.58764 1.38219 1.19702 1.19539 1.22123 0.96836 0.98295 0.98718 1.18979 0.95383 0.93902 0.92562 1.21654 0.95732 1.26183 1.14315 0.92617 1.25861 0.97962 0.98003 0.97609 1.70063 1.21491 1.39883 1.25276 0.85511 0.79635 0.78397 0.78172 1.18897 1.20347 1.20776 1.19697 1.02309 0.94030 0.95092 1.20865 0.97556 0.93581 0.97864 1.20514 1.02438 1.00820 0.91068 1.18384 0.98015 0.93970 0.86569 1.19823 1.05152 0.92719 0.96672 1.20204 0.95861 1.00941 0.90190 1.21097 1.05398 0.96015 0.92056 1.21134 0.75994 0.87406 0.84754 1.90761 1.46201 1.86797 1.18730 1.45893 1.59334 1.08702 1.13716 1.22023 1.03323 0.78700 1.03049 0.91460 0.93809 0.89860 0.75219 0.84335 0.83360 0.93751 0.91275 0.97920 0.98072 0.92809 0.83831 0.83643 0.83414 0.84276 0.83949 0.90594 0.90406 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.46 71.98 0.68 -2.06 16 2 C 0.19 3.50 2.78 44.24 0.12 3.62 16 3 H 0.09 1.80 7.44 -2.39 -0.02 1.78 16 4 N -0.71 -15.36 5.03 -446.09 -2.24 -17.61 16 5 C 0.53 15.73 7.04 87.66 0.62 16.35 16 6 O -0.57 -20.40 15.91 -3.04 -0.05 -20.45 16 7 C 0.08 2.49 3.21 44.17 0.14 2.63 16 8 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 9 N -0.83 -27.56 8.94 -171.79 -1.54 -29.10 16 10 C -0.12 -4.40 4.78 30.59 0.15 -4.26 16 11 C 0.03 1.37 4.74 29.85 0.14 1.51 16 12 C -0.54 -28.85 9.11 25.60 0.23 -28.61 16 13 H 0.06 2.90 7.74 -2.91 -0.02 2.87 16 14 C 0.00 0.22 5.46 84.66 0.46 0.68 16 15 N -0.93 -53.44 13.29 21.45 0.28 -53.15 16 16 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 C -0.11 -1.58 4.96 -19.81 -0.10 -1.68 16 21 C -0.08 -1.03 9.04 22.21 0.20 -0.83 16 22 C -0.13 -1.57 9.74 22.47 0.22 -1.35 16 23 C 0.13 1.81 6.69 38.35 0.26 2.06 16 24 C -0.14 -1.86 6.35 -19.70 -0.13 -1.98 16 25 C -0.05 -0.68 9.66 22.17 0.21 -0.46 16 26 C -0.11 -1.23 6.88 29.46 0.20 -1.02 16 27 C 0.52 9.40 8.23 87.94 0.72 10.13 16 28 O -0.55 -13.89 17.67 -3.04 -0.05 -13.95 16 29 N -0.55 -8.53 3.13 -654.14 -2.05 -10.58 16 30 C 0.07 0.76 10.77 127.77 1.38 2.13 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.41 7.12 6.87 -92.71 -0.64 6.48 16 35 H 0.34 11.65 8.58 -89.69 -0.77 10.88 16 36 H 0.35 11.91 7.55 -89.69 -0.68 11.23 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.14 1.50 6.91 -2.91 -0.02 1.48 16 43 H 0.15 1.22 7.70 -2.91 -0.02 1.20 16 44 H 0.15 1.38 8.04 -2.91 -0.02 1.36 16 45 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.94 7.95 -2.39 -0.02 0.92 16 49 H 0.10 0.68 7.61 -2.39 -0.02 0.66 16 Total: -1.00 -71.97 406.73 0.81 -71.16 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -1.09 Total: 32.28 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.52 Total: -3.13 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -5.54 Total: -110.44 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.10 Total: -34.40 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.97 0.81 -71.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818111635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.703 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds