Wall clock time and date at job start Wed Apr 1 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46949 * 2 1 4 4 N 1.46904 * 109.47005 * 120.00199 * 2 1 3 5 5 C 1.46899 * 110.99814 * 275.00155 * 4 2 1 6 6 C 1.53001 * 109.47034 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.46707 * 304.99684 * 6 5 4 8 8 O 1.42891 * 109.47204 * 64.99870 * 6 5 4 9 9 C 1.52998 * 109.46921 * 185.00138 * 6 5 4 10 10 O 1.42905 * 109.47023 * 174.99537 * 9 6 5 11 11 C 1.35675 * 117.00094 * 179.97438 * 10 9 6 12 12 C 1.39306 * 119.81729 * 359.73065 * 11 10 9 13 13 C 1.36438 * 120.18375 * 179.75702 * 12 11 10 14 14 C 1.40824 * 119.81387 * 0.51443 * 13 12 11 15 15 C 1.41217 * 120.18304 * 179.71825 * 14 13 12 16 16 H 1.07998 * 119.99788 * 24.67917 * 15 14 13 17 17 C 1.39892 * 120.00278 * 204.67262 * 15 14 13 18 18 N 1.30880 * 119.99803 * 15.49591 * 17 15 14 19 19 Si 1.86793 * 120.00304 * 195.49635 * 17 15 14 20 20 H 1.48505 * 109.46910 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47170 * 119.99946 * 19 17 15 22 22 H 1.48494 * 109.47530 * 240.00075 * 19 17 15 23 23 C 1.40837 * 119.63935 * 359.74098 * 14 13 12 24 24 C 1.36432 * 119.81110 * 359.97438 * 23 14 13 25 25 C 1.50703 * 109.47211 * 240.00060 * 2 1 3 26 26 C 1.35315 * 126.12889 * 274.25759 * 25 2 1 27 27 C 1.39865 * 107.92115 * 179.90622 * 26 25 2 28 28 N 1.30837 * 108.20165 * 0.36680 * 27 26 25 29 29 N 1.34945 * 126.12496 * 94.57136 * 25 2 1 30 30 C 1.46498 * 126.04093 * 359.97438 * 29 25 2 31 31 H 1.08996 * 109.47606 * 296.20030 * 1 2 3 32 32 H 1.09003 * 109.47128 * 56.20420 * 1 2 3 33 33 H 1.09004 * 109.47045 * 176.19658 * 1 2 3 34 34 H 1.00900 * 111.00251 * 151.04738 * 4 2 1 35 35 H 1.09002 * 109.46781 * 59.99923 * 5 4 2 36 36 H 1.08996 * 109.47349 * 299.99808 * 5 4 2 37 37 H 0.96701 * 114.00071 * 60.00129 * 8 6 5 38 38 H 1.08997 * 109.47123 * 294.99720 * 9 6 5 39 39 H 1.08998 * 109.47652 * 55.00269 * 9 6 5 40 40 H 1.08006 * 119.90830 * 0.02562 * 12 11 10 41 41 H 1.08010 * 120.09366 * 180.25589 * 13 12 11 42 42 H 0.96998 * 120.00383 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.09261 * 179.97438 * 23 14 13 44 44 H 1.08009 * 119.91000 * 179.97438 * 24 23 14 45 45 H 1.07999 * 126.03789 * 0.03626 * 26 25 2 46 46 H 1.08001 * 125.89834 * 180.14419 * 27 26 25 47 47 H 1.09004 * 109.47213 * 93.35082 * 30 29 25 48 48 H 1.09003 * 109.47625 * 213.35627 * 30 29 25 49 49 H 1.09006 * 109.47013 * 333.35441 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0824 0.2225 2.3469 6 6 2.5961 -0.5330 3.5742 7 1 1.9707 -1.4084 3.7500 8 8 3.9444 -0.9485 3.3478 9 6 2.5437 0.3851 4.7970 10 8 2.9125 -0.3536 5.9634 11 6 2.9178 0.3184 7.1420 12 6 2.5783 1.6692 7.1707 13 6 2.5764 2.3510 8.3525 14 6 2.9293 1.6882 9.5438 15 6 2.9357 2.3879 10.7705 16 1 2.3199 3.2664 10.8942 17 6 3.7395 1.9430 11.8254 18 7 4.6995 1.0827 11.5988 19 14 3.4428 2.5766 13.5573 20 1 2.3064 3.5325 13.5468 21 1 3.1219 1.4366 14.4533 22 1 4.6638 3.2640 14.0490 23 6 3.2764 0.3238 9.5052 24 6 3.2677 -0.3449 8.3160 25 6 2.0323 -0.7104 -1.2305 26 6 2.2218 -2.0439 -1.3604 27 6 2.6932 -2.2876 -2.6544 28 7 2.7911 -1.1407 -3.2765 29 7 2.3794 -0.1300 -2.3982 30 6 2.3342 1.3039 -2.6950 31 1 -0.3634 0.4537 0.9220 32 1 -0.3633 0.5716 -0.8540 33 1 -0.3633 -1.0254 -0.0682 34 1 2.9173 -1.1206 1.0288 35 1 1.0869 0.6162 2.5525 36 1 2.7587 1.0461 2.1183 37 1 4.5583 -0.2195 3.1839 38 1 3.2367 1.2149 4.6583 39 1 1.5321 0.7727 4.9173 40 1 2.3117 2.1770 6.2556 41 1 2.3089 3.3973 8.3737 42 1 5.2572 0.7744 12.3302 43 1 3.5487 -0.1916 10.4144 44 1 3.5340 -1.3911 8.2845 45 1 2.0391 -2.7887 -0.5999 46 1 2.9380 -3.2550 -3.0676 47 1 3.3075 1.7488 -2.4878 48 1 2.0843 1.4498 -3.7460 49 1 1.5770 1.7802 -2.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872240033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:23 Heat of formation + Delta-G solvation = 10.480108 kcal Electronic energy + Delta-G solvation = -28726.135994 eV Core-core repulsion = 24655.055144 eV Total energy + Delta-G solvation = -4071.080850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.63285 -39.18147 -38.07252 -36.60875 -35.87586 -33.65692 -33.32805 -32.07791 -30.18534 -29.44635 -29.16916 -28.79752 -27.10130 -25.61068 -24.54983 -23.02241 -22.07680 -21.24700 -20.74160 -20.58356 -19.76550 -17.73420 -17.37891 -16.92761 -16.60998 -16.30746 -15.93956 -15.87521 -15.22896 -15.01208 -14.77603 -14.25374 -13.99963 -13.92166 -13.87755 -13.81262 -13.45727 -13.09210 -12.89730 -12.82853 -12.78162 -12.47154 -12.27265 -12.22078 -12.15277 -11.78112 -11.49355 -11.40693 -11.18035 -10.98809 -10.95088 -10.81996 -10.61593 -10.09951 -9.98469 -9.82731 -9.62621 -9.34919 -9.05234 -8.90836 -8.83388 -7.65686 -7.03590 -6.71761 -4.27618 1.49094 2.12066 2.54925 2.75650 2.93741 3.08089 3.13068 3.19095 3.41749 3.94301 4.02311 4.07815 4.20724 4.34294 4.56554 4.61609 4.68577 4.78304 4.83116 4.86315 4.94892 4.96665 5.09723 5.23968 5.28936 5.31722 5.35230 5.44564 5.51178 5.57716 5.66111 5.81939 5.86118 6.01242 6.03429 6.21360 6.35998 6.48295 6.67248 6.71871 6.95984 6.97045 7.09736 7.17909 7.38389 7.45571 7.54121 7.58379 7.77316 7.99625 8.20013 8.43984 8.64314 8.89180 8.97334 10.22044 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.001539 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.314216 B =18190.228585 C =18540.858347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.151 3.849 3 H 0.053 0.947 4 N -0.669 5.669 5 C 0.031 3.969 6 C 0.112 3.888 7 H 0.117 0.883 8 O -0.550 6.550 9 C 0.040 3.960 10 O -0.316 6.316 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.198 4.198 14 C 0.086 3.914 15 C -0.462 4.462 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.132 4.132 24 C -0.120 4.120 25 C 0.076 3.924 26 C -0.251 4.251 27 C 0.045 3.955 28 N -0.298 5.298 29 N -0.373 5.373 30 C 0.098 3.902 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.356 0.644 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.370 0.630 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.279 0.721 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.154 0.846 46 H 0.184 0.816 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -0.859 -23.575 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.039 3.961 3 H 0.070 0.930 4 N -0.303 5.303 5 C -0.098 4.098 6 C 0.053 3.947 7 H 0.135 0.865 8 O -0.354 6.354 9 C -0.038 4.038 10 O -0.232 6.232 11 C -0.051 4.051 12 C -0.188 4.188 13 C -0.218 4.218 14 C 0.083 3.917 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.428 5.428 19 Si 0.733 3.267 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.052 4.052 26 C -0.280 4.280 27 C -0.141 4.141 28 N -0.119 5.119 29 N -0.156 5.156 30 C -0.044 4.044 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.216 0.784 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.116 0.884 45 H 0.172 0.828 46 H 0.201 0.799 47 H 0.093 0.907 48 H 0.108 0.892 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.470 -1.263 -24.353 24.992 hybrid contribution 0.706 1.391 1.144 1.935 sum -4.764 0.129 -23.209 23.694 Atomic orbital electron populations 1.21794 0.92547 1.03369 1.01733 1.19994 0.96480 0.94532 0.85087 0.92956 1.60449 1.35030 1.32094 1.02755 1.22634 1.02009 0.93895 0.91307 1.21946 0.84218 0.98543 0.90003 0.86529 1.86660 1.18067 1.37010 1.93661 1.23073 0.99994 0.94571 0.86154 1.85892 1.86022 1.37944 1.13346 1.18630 1.10414 0.91531 0.84543 1.20382 1.07249 0.93477 0.97732 1.20553 1.10968 0.98085 0.92164 1.17620 0.90248 0.91615 0.92179 1.19500 1.22463 1.11154 0.96060 0.90571 1.25884 0.93340 0.94003 1.01115 1.69822 1.13173 1.25970 1.33786 0.86260 0.79255 0.79533 0.81640 1.18522 1.19750 1.20082 1.21063 1.03459 0.94415 0.96181 1.19867 1.04528 0.98638 0.90840 1.21044 1.00973 0.94025 0.89146 1.21321 1.12982 0.94798 0.98945 1.23904 0.99343 0.97089 0.93751 1.77377 1.22360 0.95845 1.16355 1.48475 1.50950 1.06942 1.09246 1.21861 1.03225 0.75487 1.03822 0.91477 0.92708 0.91062 0.82353 0.89459 0.94560 0.78391 0.93107 0.92323 0.89009 0.88805 0.90979 0.85329 0.88392 0.82834 0.79904 0.90742 0.89213 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.42 37.16 0.35 -0.58 16 2 C 0.15 1.11 2.66 -68.86 -0.18 0.93 16 3 H 0.05 0.34 7.09 -51.93 -0.37 -0.02 16 4 N -0.67 -5.60 6.07 -107.95 -0.65 -6.25 16 5 C 0.03 0.26 5.16 -3.82 -0.02 0.24 16 6 C 0.11 1.30 3.49 -26.73 -0.09 1.21 16 7 H 0.12 1.50 8.14 -51.92 -0.42 1.07 16 8 O -0.55 -6.86 12.82 -40.08 -0.51 -7.37 16 9 C 0.04 0.57 4.37 37.16 0.16 0.73 16 10 O -0.32 -6.35 10.09 -23.58 -0.24 -6.59 16 11 C -0.01 -0.18 6.71 -38.79 -0.26 -0.44 16 12 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 13 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 14 C 0.09 2.28 5.58 -106.81 -0.60 1.68 16 15 C -0.46 -12.19 9.05 -37.83 -0.34 -12.53 16 16 H 0.08 1.93 7.89 -52.49 -0.41 1.52 16 17 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 18 N -0.80 -20.70 10.82 55.54 0.60 -20.10 16 19 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 24 C -0.12 -2.91 9.92 -39.83 -0.40 -3.31 16 25 C 0.08 0.67 5.76 -82.26 -0.47 0.19 16 26 C -0.25 -2.30 9.96 -40.01 -0.40 -2.70 16 27 C 0.04 0.41 12.03 -17.37 -0.21 0.20 16 28 N -0.30 -3.22 12.58 30.62 0.39 -2.84 16 29 N -0.37 -3.38 4.01 -63.88 -0.26 -3.63 16 30 C 0.10 0.52 11.13 59.85 0.67 1.19 16 31 H 0.07 0.44 7.37 -51.93 -0.38 0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.36 3.23 7.56 -39.29 -0.30 2.93 16 35 H 0.09 0.68 7.38 -51.93 -0.38 0.30 16 36 H 0.04 0.27 8.05 -51.93 -0.42 -0.14 16 37 H 0.37 3.43 9.05 45.56 0.41 3.84 16 38 H 0.05 0.70 7.63 -51.93 -0.40 0.31 16 39 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 40 H 0.09 1.73 6.27 -52.48 -0.33 1.40 16 41 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 42 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 43 H 0.13 3.44 6.07 -52.49 -0.32 3.12 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 45 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.30 7.40 -51.93 -0.38 -0.08 16 LS Contribution 405.72 15.07 6.11 6.11 Total: -1.00 -31.67 405.72 -9.17 -40.84 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.62 Total: 10.79 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.96 Total: -24.53 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.07 Total: -32.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.75 Total: -13.97 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.67 -9.17 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872240033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds