Wall clock time and date at job start Wed Apr 1 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46949 * 2 1 4 4 N 1.46904 * 109.47005 * 120.00199 * 2 1 3 5 5 C 1.46899 * 110.99814 * 275.00155 * 4 2 1 6 6 C 1.53001 * 109.47034 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.46707 * 304.99684 * 6 5 4 8 8 O 1.42891 * 109.47204 * 64.99870 * 6 5 4 9 9 C 1.52998 * 109.46921 * 185.00138 * 6 5 4 10 10 O 1.42905 * 109.47023 * 174.99537 * 9 6 5 11 11 C 1.35675 * 117.00094 * 179.97438 * 10 9 6 12 12 C 1.39306 * 119.81729 * 359.73065 * 11 10 9 13 13 C 1.36438 * 120.18375 * 179.75702 * 12 11 10 14 14 C 1.40824 * 119.81387 * 0.51443 * 13 12 11 15 15 C 1.41217 * 120.18304 * 179.71825 * 14 13 12 16 16 H 1.07998 * 119.99788 * 24.67917 * 15 14 13 17 17 C 1.39892 * 120.00278 * 204.67262 * 15 14 13 18 18 N 1.30880 * 119.99803 * 15.49591 * 17 15 14 19 19 Si 1.86793 * 120.00304 * 195.49635 * 17 15 14 20 20 H 1.48505 * 109.46910 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47170 * 119.99946 * 19 17 15 22 22 H 1.48494 * 109.47530 * 240.00075 * 19 17 15 23 23 C 1.40837 * 119.63935 * 359.74098 * 14 13 12 24 24 C 1.36432 * 119.81110 * 359.97438 * 23 14 13 25 25 C 1.50703 * 109.47211 * 240.00060 * 2 1 3 26 26 C 1.35315 * 126.12889 * 274.25759 * 25 2 1 27 27 C 1.39865 * 107.92115 * 179.90622 * 26 25 2 28 28 N 1.30837 * 108.20165 * 0.36680 * 27 26 25 29 29 N 1.34945 * 126.12496 * 94.57136 * 25 2 1 30 30 C 1.46498 * 126.04093 * 359.97438 * 29 25 2 31 31 H 1.08996 * 109.47606 * 296.20030 * 1 2 3 32 32 H 1.09003 * 109.47128 * 56.20420 * 1 2 3 33 33 H 1.09004 * 109.47045 * 176.19658 * 1 2 3 34 34 H 1.00900 * 111.00251 * 151.04738 * 4 2 1 35 35 H 1.09002 * 109.46781 * 59.99923 * 5 4 2 36 36 H 1.08996 * 109.47349 * 299.99808 * 5 4 2 37 37 H 0.96701 * 114.00071 * 60.00129 * 8 6 5 38 38 H 1.08997 * 109.47123 * 294.99720 * 9 6 5 39 39 H 1.08998 * 109.47652 * 55.00269 * 9 6 5 40 40 H 1.08006 * 119.90830 * 0.02562 * 12 11 10 41 41 H 1.08010 * 120.09366 * 180.25589 * 13 12 11 42 42 H 0.96998 * 120.00383 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.09261 * 179.97438 * 23 14 13 44 44 H 1.08009 * 119.91000 * 179.97438 * 24 23 14 45 45 H 1.07999 * 126.03789 * 0.03626 * 26 25 2 46 46 H 1.08001 * 125.89834 * 180.14419 * 27 26 25 47 47 H 1.09004 * 109.47213 * 93.35082 * 30 29 25 48 48 H 1.09003 * 109.47625 * 213.35627 * 30 29 25 49 49 H 1.09006 * 109.47013 * 333.35441 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0824 0.2225 2.3469 6 6 2.5961 -0.5330 3.5742 7 1 1.9707 -1.4084 3.7500 8 8 3.9444 -0.9485 3.3478 9 6 2.5437 0.3851 4.7970 10 8 2.9125 -0.3536 5.9634 11 6 2.9178 0.3184 7.1420 12 6 2.5783 1.6692 7.1707 13 6 2.5764 2.3510 8.3525 14 6 2.9293 1.6882 9.5438 15 6 2.9357 2.3879 10.7705 16 1 2.3199 3.2664 10.8942 17 6 3.7395 1.9430 11.8254 18 7 4.6995 1.0827 11.5988 19 14 3.4428 2.5766 13.5573 20 1 2.3064 3.5325 13.5468 21 1 3.1219 1.4366 14.4533 22 1 4.6638 3.2640 14.0490 23 6 3.2764 0.3238 9.5052 24 6 3.2677 -0.3449 8.3160 25 6 2.0323 -0.7104 -1.2305 26 6 2.2218 -2.0439 -1.3604 27 6 2.6932 -2.2876 -2.6544 28 7 2.7911 -1.1407 -3.2765 29 7 2.3794 -0.1300 -2.3982 30 6 2.3342 1.3039 -2.6950 31 1 -0.3634 0.4537 0.9220 32 1 -0.3633 0.5716 -0.8540 33 1 -0.3633 -1.0254 -0.0682 34 1 2.9173 -1.1206 1.0288 35 1 1.0869 0.6162 2.5525 36 1 2.7587 1.0461 2.1183 37 1 4.5583 -0.2195 3.1839 38 1 3.2367 1.2149 4.6583 39 1 1.5321 0.7727 4.9173 40 1 2.3117 2.1770 6.2556 41 1 2.3089 3.3973 8.3737 42 1 5.2572 0.7744 12.3302 43 1 3.5487 -0.1916 10.4144 44 1 3.5340 -1.3911 8.2845 45 1 2.0391 -2.7887 -0.5999 46 1 2.9380 -3.2550 -3.0676 47 1 3.3075 1.7488 -2.4878 48 1 2.0843 1.4498 -3.7460 49 1 1.5770 1.7802 -2.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872240033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:21 Heat of formation + Delta-G solvation = -11.207198 kcal Electronic energy + Delta-G solvation = -28727.076426 eV Core-core repulsion = 24655.055144 eV Total energy + Delta-G solvation = -4072.021282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.26890 -40.64718 -39.20593 -37.96816 -36.92058 -35.16700 -34.22914 -32.85128 -31.77705 -30.98863 -30.33992 -29.74667 -27.60934 -26.96133 -25.96830 -23.84113 -23.10234 -22.46340 -22.21130 -21.87161 -20.38458 -19.24835 -18.79569 -18.11464 -17.56132 -17.33143 -17.01586 -16.69176 -16.49438 -15.92442 -15.73927 -15.70195 -15.42555 -14.99994 -14.82910 -14.58153 -14.36030 -14.11825 -14.04872 -13.91684 -13.60261 -13.59133 -13.37500 -13.26238 -13.16730 -12.97879 -12.80550 -12.75816 -12.59605 -12.38317 -12.07289 -11.89324 -11.68855 -11.62660 -11.56178 -11.22419 -10.99000 -10.87628 -10.27338 -9.54742 -9.51256 -9.48746 -8.90024 -8.57044 -6.22592 0.84297 0.95472 1.04241 1.40615 1.51774 1.55599 1.57736 1.87753 2.23522 2.40451 2.74589 3.16354 3.43322 3.48591 3.71322 3.71805 3.94521 4.01799 4.04598 4.05429 4.28628 4.30804 4.33005 4.36522 4.37223 4.41975 4.49218 4.61162 4.65756 4.72534 4.74383 4.86090 4.88604 4.94493 5.06025 5.10386 5.19569 5.23277 5.30360 5.33368 5.61125 5.65879 5.72601 5.88403 5.89564 6.07308 6.10024 6.28016 6.29447 6.58373 6.72639 6.78501 6.84185 6.96572 7.11892 8.38941 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.001539 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.314216 B =18190.228585 C =18540.858347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.156 3.844 3 H 0.069 0.931 4 N -0.676 5.676 5 C 0.042 3.958 6 C 0.123 3.877 7 H 0.101 0.899 8 O -0.568 6.568 9 C 0.029 3.971 10 O -0.332 6.332 11 C 0.003 3.997 12 C -0.166 4.166 13 C -0.205 4.205 14 C 0.051 3.949 15 C -0.497 4.497 16 H 0.076 0.924 17 C 0.031 3.969 18 N -0.835 5.835 19 Si 0.983 3.017 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.151 4.151 24 C -0.137 4.137 25 C 0.076 3.924 26 C -0.268 4.268 27 C 0.038 3.962 28 N -0.333 5.333 29 N -0.377 5.377 30 C 0.087 3.913 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.351 0.649 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.383 0.617 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.286 0.714 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.155 0.845 46 H 0.204 0.796 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 0.629 -24.640 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.087 0.913 4 N -0.309 5.309 5 C -0.087 4.087 6 C 0.063 3.937 7 H 0.119 0.881 8 O -0.375 6.375 9 C -0.047 4.047 10 O -0.247 6.247 11 C -0.041 4.041 12 C -0.184 4.184 13 C -0.225 4.225 14 C 0.048 3.952 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.183 4.183 18 N -0.462 5.462 19 Si 0.804 3.196 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.171 4.171 24 C -0.156 4.156 25 C -0.053 4.053 26 C -0.298 4.298 27 C -0.147 4.147 28 N -0.155 5.155 29 N -0.160 5.160 30 C -0.053 4.053 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.173 0.827 46 H 0.221 0.779 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.203 0.238 -25.461 26.207 hybrid contribution 0.932 0.881 1.265 1.801 sum -5.271 1.119 -24.197 24.790 Atomic orbital electron populations 1.21778 0.92039 1.02806 1.02555 1.20020 0.96683 0.94905 0.83908 0.91344 1.60427 1.34865 1.32464 1.03190 1.22505 1.02847 0.93645 0.89725 1.21834 0.83922 0.97753 0.90190 0.88096 1.86631 1.18810 1.38354 1.93673 1.23499 1.00979 0.95405 0.84800 1.85886 1.85940 1.39107 1.13802 1.18692 1.08348 0.91751 0.85267 1.20705 1.05938 0.93220 0.98558 1.20814 1.10553 0.98873 0.92267 1.17986 0.91602 0.92092 0.93475 1.19747 1.23714 1.11963 0.97249 0.90563 1.26746 0.92517 0.94013 1.04979 1.69885 1.13941 1.27091 1.35298 0.85140 0.79291 0.79015 0.76125 1.18093 1.19101 1.19238 1.20967 1.05071 0.94708 0.96357 1.20029 1.05065 0.99195 0.91316 1.21284 1.00331 0.94089 0.89549 1.21474 1.13792 0.95360 0.99133 1.24313 0.98806 0.97701 0.93834 1.77318 1.23786 0.96741 1.17677 1.48759 1.50384 1.07867 1.09009 1.22167 1.04521 0.73827 1.04763 0.90818 0.91649 0.92400 0.82856 0.88273 0.92853 0.76794 0.91759 0.90873 0.85050 0.87520 0.90312 0.87067 0.87697 0.82748 0.77931 0.89886 0.88746 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.42 71.98 0.68 -0.81 16 2 C 0.16 1.89 2.66 44.17 0.12 2.01 16 3 H 0.07 0.64 7.09 -2.39 -0.02 0.62 16 4 N -0.68 -9.73 6.07 -495.44 -3.01 -12.74 16 5 C 0.04 0.57 5.16 86.30 0.44 1.02 16 6 C 0.12 2.55 3.49 30.59 0.11 2.66 16 7 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 8 O -0.57 -13.12 12.82 -144.34 -1.85 -14.97 16 9 C 0.03 0.76 4.37 71.98 0.31 1.08 16 10 O -0.33 -12.75 10.09 -85.29 -0.86 -13.61 16 11 C 0.00 0.15 6.71 22.79 0.15 0.30 16 12 C -0.17 -7.02 8.96 22.11 0.20 -6.82 16 13 C -0.21 -9.86 9.74 22.48 0.22 -9.64 16 14 C 0.05 2.74 5.58 -21.28 -0.12 2.63 16 15 C -0.50 -26.80 9.05 23.40 0.21 -26.59 16 16 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 17 C 0.03 1.55 5.19 85.24 0.44 2.00 16 18 N -0.83 -44.27 10.82 21.82 0.24 -44.03 16 19 Si 0.98 38.39 29.59 68.60 2.03 40.42 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.15 -8.17 8.64 22.48 0.19 -7.98 16 24 C -0.14 -6.76 9.92 22.11 0.22 -6.54 16 25 C 0.08 1.22 5.76 41.41 0.24 1.45 16 26 C -0.27 -4.73 9.96 21.99 0.22 -4.51 16 27 C 0.04 0.68 12.03 85.24 1.02 1.71 16 28 N -0.33 -7.00 12.58 -57.03 -0.72 -7.72 16 29 N -0.38 -6.28 4.01 -356.02 -1.43 -7.71 16 30 C 0.09 0.75 11.13 127.77 1.42 2.17 16 31 H 0.07 0.73 7.37 -2.39 -0.02 0.72 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.35 5.75 7.56 -89.69 -0.68 5.07 16 35 H 0.10 1.16 7.38 -2.39 -0.02 1.14 16 36 H 0.05 0.57 8.05 -2.39 -0.02 0.56 16 37 H 0.38 6.23 9.05 -74.06 -0.67 5.56 16 38 H 0.06 1.53 7.63 -2.39 -0.02 1.51 16 39 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 40 H 0.13 4.43 6.27 -2.91 -0.02 4.42 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 43 H 0.11 6.26 6.07 -2.91 -0.02 6.25 16 44 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 45 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 46 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.11 0.42 7.40 -2.38 -0.02 0.40 16 Total: -1.00 -69.74 405.72 0.12 -69.62 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.37 Total: 36.60 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 6.08 Total: -45.86 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -4.92 Total: -72.20 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -2.71 Total: -28.58 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -69.74 0.12 -69.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872240033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.415 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds