Wall clock time and date at job start Wed Apr 1 2020 04:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47102 * 2 1 4 4 C 1.53003 * 109.46828 * 239.99918 * 2 1 3 5 5 C 1.50699 * 109.46867 * 65.00578 * 4 2 1 6 6 H 1.08003 * 120.00259 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00167 * 180.02562 * 5 4 2 8 8 N 1.31523 * 120.00022 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00444 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47047 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47307 * 119.99869 * 9 7 5 12 12 H 1.48503 * 109.47073 * 239.99951 * 9 7 5 13 13 C 1.52998 * 109.47324 * 120.00366 * 2 1 3 14 14 N 1.46901 * 109.46853 * 294.99922 * 13 2 1 15 15 C 1.46899 * 110.99984 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.47308 * 179.97438 * 15 14 13 17 17 C 1.38232 * 119.99886 * 269.90910 * 16 15 14 18 18 C 1.38243 * 120.00069 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99602 * 0.09581 * 18 17 16 20 20 C 1.50701 * 119.99808 * 179.97438 * 19 18 17 21 21 N 1.46500 * 109.46797 * 89.99740 * 20 19 18 22 22 C 1.34769 * 124.17631 * 90.00556 * 21 20 19 23 23 O 1.21242 * 127.15453 * 359.92079 * 22 21 20 24 24 C 1.51581 * 105.68961 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.58964 * 359.97438 * 24 22 21 26 26 C 1.33791 * 124.18099 * 269.70061 * 21 20 19 27 27 O 1.21535 * 123.77135 * 0.03504 * 26 21 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 29 29 C 1.38234 * 120.00242 * 89.99856 * 16 15 14 30 30 H 1.08999 * 109.47208 * 59.99479 * 1 2 3 31 31 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47039 * 300.00083 * 1 2 3 33 33 H 1.09004 * 109.47244 * 184.99486 * 4 2 1 34 34 H 1.08997 * 109.47465 * 305.00099 * 4 2 1 35 35 H 0.96993 * 119.99825 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47221 * 175.00093 * 13 2 1 37 37 H 1.09000 * 109.47309 * 54.99653 * 13 2 1 38 38 H 1.00905 * 110.99957 * 303.94964 * 14 13 2 39 39 H 1.09007 * 109.46882 * 59.99714 * 15 14 13 40 40 H 1.09000 * 109.47517 * 299.99813 * 15 14 13 41 41 H 1.08001 * 120.00365 * 0.06714 * 17 16 15 42 42 H 1.08000 * 119.99728 * 180.36512 * 18 17 16 43 43 H 1.08993 * 109.47341 * 210.00461 * 20 19 18 44 44 H 1.09001 * 109.46864 * 330.00546 * 20 19 18 45 45 H 1.08993 * 110.59975 * 118.51979 * 24 22 21 46 46 H 1.08993 * 110.59815 * 241.47482 * 24 22 21 47 47 H 0.97000 * 126.69199 * 180.02562 * 25 24 22 48 48 H 1.08001 * 120.00371 * 179.97438 * 28 19 18 49 49 H 1.08000 * 119.99729 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 2.6753 -1.5193 -3.8513 9 14 1.4976 0.5623 -5.2497 10 1 0.7404 1.7735 -4.8435 11 1 2.7153 0.9668 -5.9970 12 1 0.6431 -0.2870 -6.1180 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1248 -0.6272 3.6671 16 6 1.7089 0.1785 4.8708 17 6 2.5423 1.1650 5.3638 18 6 2.1606 1.9045 6.4676 19 6 0.9463 1.6561 7.0796 20 6 0.5303 2.4618 8.2833 21 7 -0.2108 3.6471 7.8451 22 6 -1.5472 3.6841 7.6745 23 8 -2.3328 2.7769 7.8470 24 6 -1.8636 5.0955 7.2210 25 7 -0.5451 5.7515 7.1860 26 6 0.3546 4.8281 7.5703 27 8 1.5479 5.0419 7.6554 28 6 0.1135 0.6686 6.5876 29 6 0.4947 -0.0701 5.4831 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2952 35 1 2.9225 -1.8421 -4.7319 36 1 3.1263 -0.7995 1.2055 37 1 1.6054 -1.7199 1.2951 38 1 1.9883 0.9872 2.3967 39 1 3.2117 -0.7052 3.6404 40 1 1.6904 -1.6250 3.7297 41 1 3.4911 1.3591 4.8857 42 1 2.8092 2.6792 6.8491 43 1 -0.1052 1.8529 8.9262 44 1 1.4166 2.7717 8.8369 45 1 -2.3147 5.0874 6.2289 46 1 -2.5189 5.5906 7.9375 47 1 -0.3617 6.6711 6.9375 48 1 -0.8351 0.4742 7.0659 49 1 -0.1560 -0.8416 5.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877716781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:40 Heat of formation + Delta-G solvation = -31.004802 kcal Electronic energy + Delta-G solvation = -29074.117516 eV Core-core repulsion = 25001.237745 eV Total energy + Delta-G solvation = -4072.879771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73928 -39.62664 -38.96943 -36.95850 -36.49767 -35.55370 -34.09516 -32.35642 -31.21466 -31.06359 -28.49178 -27.76255 -26.72773 -25.40990 -23.90337 -23.44051 -22.69725 -22.19311 -21.43414 -20.52538 -19.09684 -18.49510 -17.72249 -17.15935 -16.45787 -16.26683 -15.93242 -15.77951 -15.64402 -15.33762 -14.87690 -14.63547 -14.60387 -14.49170 -14.19872 -14.10558 -13.76764 -13.53252 -13.16809 -12.79117 -12.73707 -12.48501 -12.16370 -12.07056 -11.53943 -11.42621 -11.34012 -11.30443 -11.06437 -10.85193 -10.73606 -10.69627 -10.28186 -10.26065 -10.18691 -9.97178 -9.69416 -9.20031 -9.03391 -8.97236 -8.80905 -8.32447 -8.12120 -5.97055 -3.97999 0.93968 1.19785 1.30018 1.90304 2.57444 2.68568 3.32378 3.39910 3.44060 3.50869 3.62274 4.24954 4.39636 4.46775 4.48777 4.57430 4.60335 4.79521 4.84279 4.89953 5.02062 5.07751 5.22896 5.34481 5.35894 5.38823 5.57685 5.60289 5.73649 5.86295 5.89029 5.96552 6.16359 6.24867 6.26969 6.35357 6.41416 6.54120 6.55532 6.60133 6.69801 6.84014 6.91917 7.01583 7.19070 7.20126 7.34501 7.62425 7.67285 7.70794 7.86252 8.03370 8.47469 9.08589 9.65356 11.14541 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.001887 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.209610 B =14835.403288 C =15665.423768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.093 3.907 16 C -0.062 4.062 17 C -0.119 4.119 18 C -0.092 4.092 19 C -0.129 4.129 20 C 0.164 3.836 21 N -0.572 5.572 22 C 0.521 3.479 23 O -0.466 6.466 24 C 0.061 3.939 25 N -0.730 5.730 26 C 0.702 3.298 27 O -0.540 6.540 28 C -0.097 4.097 29 C -0.102 4.102 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.338 0.662 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.442 0.558 48 H 0.124 0.876 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 11.665 29.227 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.036 4.036 16 C -0.062 4.062 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.044 3.956 21 N -0.318 5.318 22 C 0.308 3.692 23 O -0.335 6.335 24 C -0.066 4.066 25 N -0.395 5.395 26 C 0.402 3.598 27 O -0.413 6.413 28 C -0.116 4.116 29 C -0.120 4.120 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.286 0.714 48 H 0.142 0.858 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.366 10.771 29.308 32.082 hybrid contribution 0.804 1.042 -1.218 1.793 sum -6.561 11.813 28.090 31.172 Atomic orbital electron populations 1.21585 0.95717 1.00555 1.00118 1.21197 0.96016 0.98893 0.93977 0.92878 1.19131 0.95914 0.95597 0.90442 1.21273 1.34445 1.08253 0.90968 0.92530 1.25031 0.95378 0.95114 0.99121 1.69978 1.39208 1.21258 1.23250 0.86571 0.78236 0.80129 0.83285 1.19760 1.21121 1.21081 1.22186 0.97246 0.97755 0.89320 1.60587 1.63932 1.05774 1.00943 1.20930 0.97544 0.97330 0.87787 1.19974 0.94347 0.96065 0.95854 1.21086 0.99963 0.96018 0.96719 1.21083 0.95862 0.98637 0.95456 1.19877 0.95952 0.98502 0.98692 1.20527 0.97396 0.83241 0.94478 1.46481 1.09632 1.12598 1.63119 1.20923 0.81927 0.90434 0.75938 1.90834 1.52499 1.42287 1.47874 1.22490 0.87608 0.90723 1.05803 1.45435 1.06688 1.14652 1.72704 1.15884 0.85469 0.80547 0.77878 1.91019 1.12320 1.80791 1.57151 1.21102 0.98919 0.95205 0.96332 1.21046 0.95854 0.99940 0.95204 0.92791 0.94158 0.93993 0.96925 0.96526 0.93166 0.95677 0.91442 0.84452 0.94536 0.90217 0.86045 0.85621 0.87937 0.87784 0.85691 0.85864 0.71377 0.85793 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.10 5.07 -3.82 -0.02 1.08 16 14 N -0.68 -10.05 5.94 -115.06 -0.68 -10.73 16 15 C 0.09 1.16 5.81 -4.98 -0.03 1.13 16 16 C -0.06 -0.72 5.39 -104.62 -0.56 -1.29 16 17 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 18 C -0.09 -0.96 9.70 -39.58 -0.38 -1.35 16 19 C -0.13 -1.26 5.46 -104.63 -0.57 -1.83 16 20 C 0.16 1.28 5.83 -5.19 -0.03 1.25 16 21 N -0.57 -4.60 2.59 -122.02 -0.32 -4.91 16 22 C 0.52 3.82 8.32 -10.56 -0.09 3.73 16 23 O -0.47 -4.67 17.76 5.59 0.10 -4.58 16 24 C 0.06 0.20 7.97 -4.31 -0.03 0.17 16 25 N -0.73 -3.46 6.58 -65.74 -0.43 -3.90 16 26 C 0.70 6.05 8.62 -88.02 -0.76 5.29 16 27 O -0.54 -6.46 17.48 5.34 0.09 -6.37 16 28 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16 29 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 30 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.34 4.90 8.72 -39.29 -0.34 4.56 16 39 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 44 H 0.10 0.74 7.80 -51.93 -0.40 0.34 16 45 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 47 H 0.44 1.14 8.96 -40.82 -0.37 0.77 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 412.50 15.07 6.22 6.22 Total: -1.00 -34.69 412.50 -11.05 -45.74 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.71 Total: 1.24 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -4.04 Total: -13.12 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.70 Total: -45.95 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.19 Total: -10.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.69 -11.05 -45.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877716781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.739 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds