Wall clock time and date at job start Wed Apr 1 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47102 * 2 1 4 4 C 1.53003 * 109.46828 * 239.99918 * 2 1 3 5 5 C 1.50699 * 109.46867 * 65.00578 * 4 2 1 6 6 H 1.08003 * 120.00259 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00167 * 180.02562 * 5 4 2 8 8 N 1.31523 * 120.00022 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00444 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47047 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47307 * 119.99869 * 9 7 5 12 12 H 1.48503 * 109.47073 * 239.99951 * 9 7 5 13 13 C 1.52998 * 109.47324 * 120.00366 * 2 1 3 14 14 N 1.46901 * 109.46853 * 294.99922 * 13 2 1 15 15 C 1.46899 * 110.99984 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.47308 * 179.97438 * 15 14 13 17 17 C 1.38232 * 119.99886 * 269.90910 * 16 15 14 18 18 C 1.38243 * 120.00069 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99602 * 0.09581 * 18 17 16 20 20 C 1.50701 * 119.99808 * 179.97438 * 19 18 17 21 21 N 1.46500 * 109.46797 * 89.99740 * 20 19 18 22 22 C 1.34769 * 124.17631 * 90.00556 * 21 20 19 23 23 O 1.21242 * 127.15453 * 359.92079 * 22 21 20 24 24 C 1.51581 * 105.68961 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.58964 * 359.97438 * 24 22 21 26 26 C 1.33791 * 124.18099 * 269.70061 * 21 20 19 27 27 O 1.21535 * 123.77135 * 0.03504 * 26 21 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 29 29 C 1.38234 * 120.00242 * 89.99856 * 16 15 14 30 30 H 1.08999 * 109.47208 * 59.99479 * 1 2 3 31 31 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47039 * 300.00083 * 1 2 3 33 33 H 1.09004 * 109.47244 * 184.99486 * 4 2 1 34 34 H 1.08997 * 109.47465 * 305.00099 * 4 2 1 35 35 H 0.96993 * 119.99825 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47221 * 175.00093 * 13 2 1 37 37 H 1.09000 * 109.47309 * 54.99653 * 13 2 1 38 38 H 1.00905 * 110.99957 * 303.94964 * 14 13 2 39 39 H 1.09007 * 109.46882 * 59.99714 * 15 14 13 40 40 H 1.09000 * 109.47517 * 299.99813 * 15 14 13 41 41 H 1.08001 * 120.00365 * 0.06714 * 17 16 15 42 42 H 1.08000 * 119.99728 * 180.36512 * 18 17 16 43 43 H 1.08993 * 109.47341 * 210.00461 * 20 19 18 44 44 H 1.09001 * 109.46864 * 330.00546 * 20 19 18 45 45 H 1.08993 * 110.59975 * 118.51979 * 24 22 21 46 46 H 1.08993 * 110.59815 * 241.47482 * 24 22 21 47 47 H 0.97000 * 126.69199 * 180.02562 * 25 24 22 48 48 H 1.08001 * 120.00371 * 179.97438 * 28 19 18 49 49 H 1.08000 * 119.99729 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 2.6753 -1.5193 -3.8513 9 14 1.4976 0.5623 -5.2497 10 1 0.7404 1.7735 -4.8435 11 1 2.7153 0.9668 -5.9970 12 1 0.6431 -0.2870 -6.1180 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1248 -0.6272 3.6671 16 6 1.7089 0.1785 4.8708 17 6 2.5423 1.1650 5.3638 18 6 2.1606 1.9045 6.4676 19 6 0.9463 1.6561 7.0796 20 6 0.5303 2.4618 8.2833 21 7 -0.2108 3.6471 7.8451 22 6 -1.5472 3.6841 7.6745 23 8 -2.3328 2.7769 7.8470 24 6 -1.8636 5.0955 7.2210 25 7 -0.5451 5.7515 7.1860 26 6 0.3546 4.8281 7.5703 27 8 1.5479 5.0419 7.6554 28 6 0.1135 0.6686 6.5876 29 6 0.4947 -0.0701 5.4831 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2952 35 1 2.9225 -1.8421 -4.7319 36 1 3.1263 -0.7995 1.2055 37 1 1.6054 -1.7199 1.2951 38 1 1.9883 0.9872 2.3967 39 1 3.2117 -0.7052 3.6404 40 1 1.6904 -1.6250 3.7297 41 1 3.4911 1.3591 4.8857 42 1 2.8092 2.6792 6.8491 43 1 -0.1052 1.8529 8.9262 44 1 1.4166 2.7717 8.8369 45 1 -2.3147 5.0874 6.2289 46 1 -2.5189 5.5906 7.9375 47 1 -0.3617 6.6711 6.9375 48 1 -0.8351 0.4742 7.0659 49 1 -0.1560 -0.8416 5.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877716781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:39 Heat of formation + Delta-G solvation = -54.038451 kcal Electronic energy + Delta-G solvation = -29075.116330 eV Core-core repulsion = 25001.237745 eV Total energy + Delta-G solvation = -4073.878585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.30069 -40.46699 -39.61360 -38.34323 -37.14484 -36.43861 -35.45017 -34.08919 -32.35497 -31.89393 -29.38064 -28.72150 -28.22087 -26.70815 -25.26981 -24.11619 -23.78641 -23.44345 -22.20841 -21.23780 -20.75609 -19.04971 -18.50460 -18.29775 -17.75596 -17.17354 -16.82836 -16.60368 -16.48629 -16.23881 -16.14256 -15.96583 -15.61217 -15.36566 -15.24827 -14.98055 -14.63872 -14.41349 -14.34192 -14.18551 -13.84049 -13.48567 -13.42691 -13.27081 -13.10329 -12.98885 -12.76091 -12.55461 -12.26710 -12.22186 -12.10582 -11.94221 -11.86941 -11.49899 -11.31675 -11.10400 -10.96548 -10.87690 -10.54247 -10.39686 -9.87732 -9.74299 -9.32375 -8.17884 -6.26846 0.13785 0.45829 0.64838 1.33024 1.39579 1.40044 1.53102 1.95836 2.30162 2.41724 2.73216 3.09185 3.15552 3.40510 3.67708 3.69718 3.90353 3.97357 4.07482 4.16007 4.23603 4.32265 4.33559 4.36715 4.47979 4.51942 4.54478 4.58399 4.65213 4.71627 4.79233 4.88654 4.92714 5.01091 5.01589 5.12611 5.28035 5.40711 5.45431 5.50026 5.55402 5.55788 5.66718 5.80546 5.85944 5.88627 5.97874 6.05130 6.05253 6.30889 6.39936 6.42540 6.89251 7.12313 7.41378 8.94371 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.001887 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.209610 B =14835.403288 C =15665.423768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.679 5.679 15 C 0.097 3.903 16 C -0.073 4.073 17 C -0.124 4.124 18 C -0.098 4.098 19 C -0.124 4.124 20 C 0.161 3.839 21 N -0.576 5.576 22 C 0.514 3.486 23 O -0.497 6.497 24 C 0.070 3.930 25 N -0.713 5.713 26 C 0.695 3.305 27 O -0.581 6.581 28 C -0.099 4.099 29 C -0.109 4.109 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.064 0.936 33 H -0.014 1.014 34 H -0.009 1.009 35 H 0.262 0.738 36 H 0.020 0.980 37 H 0.065 0.935 38 H 0.341 0.659 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.148 0.852 46 H 0.160 0.840 47 H 0.453 0.547 48 H 0.132 0.868 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 13.594 29.954 34.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.310 5.310 15 C -0.031 4.031 16 C -0.073 4.073 17 C -0.143 4.143 18 C -0.117 4.117 19 C -0.125 4.125 20 C 0.041 3.959 21 N -0.321 5.321 22 C 0.304 3.696 23 O -0.368 6.368 24 C -0.056 4.056 25 N -0.378 5.378 26 C 0.395 3.605 27 O -0.457 6.457 28 C -0.118 4.118 29 C -0.128 4.128 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.005 0.995 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.159 0.841 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.166 0.834 46 H 0.178 0.822 47 H 0.300 0.700 48 H 0.150 0.850 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.981 12.739 30.044 33.846 hybrid contribution 1.283 0.448 -1.366 1.927 sum -7.699 13.187 28.678 32.490 Atomic orbital electron populations 1.21474 0.94715 1.00397 1.00363 1.21006 0.96695 0.98350 0.93186 0.92968 1.19023 0.94131 0.94742 0.92693 1.21661 1.34273 1.08515 0.92065 0.92153 1.25965 0.95317 0.96132 1.02685 1.70109 1.40380 1.22947 1.24208 0.85450 0.78065 0.78891 0.78969 1.18573 1.20537 1.20523 1.21881 0.96742 0.97428 0.89155 1.60515 1.64034 1.05769 1.00694 1.20912 0.97848 0.97398 0.86981 1.19888 0.94891 0.96636 0.95931 1.21208 1.00217 0.95894 0.96932 1.21165 0.96293 0.98702 0.95493 1.20071 0.95420 0.98145 0.98840 1.20572 0.98073 0.83450 0.93840 1.46538 1.10156 1.12440 1.62966 1.21566 0.81226 0.91724 0.75119 1.90821 1.52960 1.43728 1.49335 1.22721 0.87049 0.87991 1.07836 1.45432 1.06623 1.14640 1.71121 1.16080 0.85354 0.81118 0.77946 1.90991 1.14113 1.81475 1.59129 1.21204 0.99299 0.95154 0.96137 1.21175 0.95809 1.00222 0.95558 0.94381 0.94511 0.91732 0.99520 0.99065 0.92954 0.96143 0.91673 0.84132 0.94032 0.89944 0.85433 0.85504 0.86702 0.87361 0.83434 0.82245 0.70025 0.85019 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -3.03 2.48 -10.79 -0.03 -3.05 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -30.05 8.41 25.60 0.22 -29.83 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.64 5.07 86.30 0.44 3.08 16 14 N -0.68 -19.29 5.94 -517.93 -3.08 -22.37 16 15 C 0.10 2.33 5.81 85.56 0.50 2.83 16 16 C -0.07 -1.64 5.39 -19.87 -0.11 -1.75 16 17 C -0.12 -2.66 9.70 22.27 0.22 -2.44 16 18 C -0.10 -2.00 9.70 22.27 0.22 -1.78 16 19 C -0.12 -2.31 5.46 -19.87 -0.11 -2.42 16 20 C 0.16 2.38 5.83 85.63 0.50 2.88 16 21 N -0.58 -8.48 2.59 -777.22 -2.01 -10.50 16 22 C 0.51 6.56 8.32 87.94 0.73 7.29 16 23 O -0.50 -9.27 17.76 -2.91 -0.05 -9.32 16 24 C 0.07 0.24 7.97 85.76 0.68 0.92 16 25 N -0.71 -5.01 6.58 -480.32 -3.16 -8.17 16 26 C 0.69 11.06 8.62 179.44 1.55 12.61 16 27 O -0.58 -13.65 17.48 -3.82 -0.07 -13.72 16 28 C -0.10 -1.95 9.70 22.27 0.22 -1.73 16 29 C -0.11 -2.35 9.70 22.27 0.22 -2.14 16 30 H 0.04 1.57 6.95 -2.39 -0.02 1.55 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.34 9.46 8.72 -89.69 -0.78 8.67 16 39 H 0.04 0.97 8.08 -2.38 -0.02 0.95 16 40 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 41 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.11 1.38 7.95 -2.39 -0.02 1.36 16 44 H 0.11 1.49 7.80 -2.39 -0.02 1.48 16 45 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.45 1.18 8.96 -92.71 -0.83 0.35 16 48 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 49 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -75.78 412.50 -0.23 -76.01 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.64 Total: 15.72 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.47 Total: -17.19 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -7.97 Total: -98.33 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.12 Total: -23.04 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.78 -0.23 -76.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877716781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.973 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds