Wall clock time and date at job start Wed Apr 1 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99938 * 269.72489 * 16 15 14 18 18 C 1.38235 * 119.99796 * 179.78393 * 17 16 15 19 19 C 1.38240 * 120.00038 * 0.44844 * 18 17 16 20 20 C 1.50699 * 119.99877 * 179.83077 * 19 18 17 21 21 N 1.46498 * 109.47350 * 269.97385 * 20 19 18 22 22 C 1.34764 * 124.17554 * 89.99628 * 21 20 19 23 23 O 1.21231 * 127.16298 * 359.93698 * 22 21 20 24 24 C 1.51587 * 105.68543 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59112 * 0.02562 * 24 22 21 26 26 C 1.33789 * 124.17945 * 269.70412 * 21 20 19 27 27 O 1.21543 * 123.76772 * 0.03015 * 26 21 20 28 28 C 1.38231 * 120.00144 * 359.80274 * 19 18 17 29 29 C 1.38234 * 120.00015 * 89.99457 * 16 15 14 30 30 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 32 32 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 33 33 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 34 34 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 35 35 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 36 36 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 37 37 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 38 38 H 1.00901 * 110.99900 * 303.95543 * 14 13 2 39 39 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 40 40 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 41 41 H 1.07998 * 120.00155 * 0.02562 * 17 16 15 42 42 H 1.08004 * 119.99944 * 180.26960 * 18 17 16 43 43 H 1.09003 * 109.47196 * 29.97348 * 20 19 18 44 44 H 1.08994 * 109.47223 * 149.97286 * 20 19 18 45 45 H 1.09002 * 110.59369 * 118.52728 * 24 22 21 46 46 H 1.08990 * 110.60233 * 241.47924 * 24 22 21 47 47 H 0.96995 * 126.69158 * 180.02562 * 25 24 22 48 48 H 1.07993 * 120.00392 * 180.02562 * 28 19 18 49 49 H 1.08002 * 120.00278 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 6 0.4962 -0.0757 -5.4861 18 6 0.1118 0.6658 -6.5875 19 6 0.9432 1.6547 -7.0794 20 6 0.5257 2.4605 -8.2825 21 7 0.9983 1.7991 -9.5013 22 6 0.2902 0.8802 -10.1871 23 8 -0.8155 0.4600 -9.9215 24 6 1.1643 0.4804 -11.3593 25 7 2.3775 1.2968 -11.1806 26 6 2.1838 2.0367 -10.0740 27 8 2.9966 2.8297 -9.6407 28 6 2.1571 1.9048 -6.4674 29 6 2.5396 1.1662 -5.3632 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 3.1262 -0.7995 1.2057 34 1 1.6053 -1.7197 1.2952 35 1 1.9007 -0.0402 5.6795 36 1 3.1263 -0.7995 -1.2055 37 1 1.6054 -1.7198 -1.2951 38 1 0.6529 0.1793 -2.4753 39 1 3.2117 -0.7051 -3.6404 40 1 1.6905 -1.6250 -3.7296 41 1 -0.1518 -0.8505 -5.1038 42 1 -0.8368 0.4707 -7.0656 43 1 -0.5613 2.5374 -8.3090 44 1 0.9590 3.4586 -8.2195 45 1 1.4065 -0.5813 -11.3123 46 1 0.6748 0.7218 -12.3026 47 1 3.1612 1.3029 -11.7521 48 1 2.8064 2.6776 -6.8514 49 1 3.4880 1.3617 -4.8850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877716782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:44 Heat of formation + Delta-G solvation = -26.716364 kcal Electronic energy + Delta-G solvation = -28840.035816 eV Core-core repulsion = 24767.342006 eV Total energy + Delta-G solvation = -4072.693810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.81210 -39.66722 -39.04483 -37.13535 -36.57147 -35.63689 -34.14967 -32.35592 -31.31240 -31.09535 -28.60985 -27.96390 -27.19588 -25.56786 -23.96714 -23.51882 -22.72357 -21.86747 -21.46897 -20.56087 -19.02247 -18.56707 -17.79512 -17.21809 -16.92610 -16.42444 -16.02138 -15.79725 -15.75111 -15.41879 -14.93780 -14.81972 -14.67805 -14.56857 -14.12216 -13.98836 -13.74052 -13.57345 -13.31357 -12.90579 -12.79246 -12.62052 -12.43694 -12.04652 -11.88286 -11.65602 -11.48761 -11.36906 -11.10749 -11.01071 -10.76990 -10.71657 -10.41257 -10.27913 -10.05605 -9.80354 -9.71565 -9.46924 -9.06525 -9.04863 -8.89675 -8.49944 -8.21583 -6.00077 -3.96961 0.90134 1.11847 1.26840 1.83801 2.50473 2.60374 3.32418 3.40048 3.43392 3.43738 3.57828 4.19362 4.35315 4.39722 4.48409 4.49349 4.52855 4.75609 4.80982 4.83582 4.98077 5.02134 5.18854 5.29956 5.32211 5.33409 5.51835 5.54640 5.67081 5.71286 5.81975 5.92301 5.96477 6.14257 6.18688 6.21930 6.32247 6.37714 6.46580 6.50924 6.54004 6.76415 6.81109 6.84689 6.97713 7.07661 7.21726 7.33727 7.48642 7.58952 7.60223 7.84634 8.59464 9.05725 9.62765 11.13345 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.001605 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.366094 B =17446.574222 C =17622.641081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.061 3.939 14 N -0.683 5.683 15 C 0.093 3.907 16 C -0.063 4.063 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.128 4.128 20 C 0.163 3.837 21 N -0.572 5.572 22 C 0.520 3.480 23 O -0.466 6.466 24 C 0.062 3.938 25 N -0.731 5.731 26 C 0.701 3.299 27 O -0.538 6.538 28 C -0.092 4.092 29 C -0.101 4.101 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.015 0.985 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.341 0.659 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.441 0.559 48 H 0.127 0.873 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -0.213 -38.069 38.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.036 4.036 16 C -0.064 4.064 17 C -0.138 4.138 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.043 3.957 21 N -0.318 5.318 22 C 0.307 3.693 23 O -0.335 6.335 24 C -0.066 4.066 25 N -0.396 5.396 26 C 0.401 3.599 27 O -0.410 6.410 28 C -0.110 4.110 29 C -0.120 4.120 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.286 0.714 48 H 0.145 0.855 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.883 0.447 -37.361 37.374 hybrid contribution 0.223 -1.704 -0.028 1.718 sum -0.659 -1.256 -37.389 37.416 Atomic orbital electron populations 1.21755 0.96227 1.00486 1.00869 1.21033 0.95239 1.00249 0.92931 0.90962 1.19604 0.95937 0.95668 0.93409 1.21137 1.35309 1.09542 0.89086 0.90808 1.25032 0.95669 0.96961 0.95965 1.69916 1.47242 1.39251 0.98017 0.86800 0.80638 0.84310 0.77642 1.20467 1.19083 1.21475 1.22196 1.00376 0.94470 0.89672 1.60602 1.20008 1.50169 1.00711 1.20925 1.00940 0.94012 0.87706 1.19958 0.94271 0.96339 0.95804 1.21055 0.96261 1.00231 0.96284 1.21048 0.99336 0.94847 0.96224 1.19875 0.96194 0.99133 0.97710 1.20552 1.00872 0.95680 0.78620 1.46496 1.18089 1.40568 1.26619 1.20918 0.86068 0.78193 0.84121 1.90835 1.17270 1.54665 1.70757 1.22478 0.85722 0.99027 0.99346 1.45436 1.20758 1.44239 1.29152 1.15898 0.81796 0.81358 0.80813 1.91033 1.45975 1.37375 1.66661 1.21147 0.95372 0.99230 0.95298 1.21073 1.00086 0.95059 0.95776 0.94095 0.91296 0.94699 0.96671 0.97262 0.92847 0.91402 0.95773 0.83993 0.90224 0.94620 0.86082 0.85816 0.87854 0.87626 0.85874 0.85869 0.71416 0.85507 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.50 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.06 1.01 5.14 -3.83 -0.02 0.99 16 14 N -0.68 -9.78 6.49 -115.06 -0.75 -10.53 16 15 C 0.09 1.12 5.81 -4.98 -0.03 1.09 16 16 C -0.06 -0.72 5.39 -104.62 -0.56 -1.29 16 17 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 18 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 19 C -0.13 -1.23 5.46 -104.62 -0.57 -1.80 16 20 C 0.16 1.25 5.83 -5.20 -0.03 1.21 16 21 N -0.57 -4.18 2.59 -122.03 -0.32 -4.49 16 22 C 0.52 3.32 8.31 -10.55 -0.09 3.23 16 23 O -0.47 -4.27 17.76 5.60 0.10 -4.17 16 24 C 0.06 0.13 7.97 -4.31 -0.03 0.10 16 25 N -0.73 -2.64 6.58 -65.73 -0.43 -3.07 16 26 C 0.70 5.43 8.62 -88.02 -0.76 4.68 16 27 O -0.54 -6.07 17.48 5.33 0.09 -5.98 16 28 C -0.09 -0.96 9.70 -39.58 -0.38 -1.35 16 29 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 32 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 4.75 6.97 -39.29 -0.27 4.48 16 39 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.10 0.68 7.95 -51.93 -0.41 0.26 16 44 H 0.11 0.76 7.80 -51.93 -0.40 0.36 16 45 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 46 H 0.12 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.44 0.61 8.96 -40.82 -0.37 0.24 16 48 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -35.18 406.63 -10.66 -45.84 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.55 Total: 1.31 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.04 Total: -14.97 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.72 Total: -45.45 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.19 Total: -10.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.18 -10.66 -45.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877716782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.126 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds